data_8QFH # _model_server_result.job_id HuK3M8V33nHkbKWnxWTXXQ _model_server_result.datetime_utc '2025-07-17 08:23:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qfh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8QFH # _exptl.entry_id 8QFH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QFH _cell.length_a 54.3 _cell.length_b 145.8 _cell.length_c 105.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QFH _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 0 0 -52.65 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 156 A ASP 156 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc2 A OD2 ASP 156 A ASP 156 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc3 A O ILE 157 A ILE 157 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc4 A OD2 ASP 200 A ASP 200 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc5 A OD1 ASP 200 A ASP 200 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc6 C O2G ATP . A ATP 402 1_555 D MG MG . A MG 403 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc7 C O2G ATP . A ATP 402 1_555 D MG MG . A MG 403 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc8 C O1B ATP . A ATP 402 1_555 D MG MG . A MG 403 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc9 C O1B ATP . A ATP 402 1_555 D MG MG . A MG 403 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc10 C O2A ATP . A ATP 402 1_555 D MG MG . A MG 403 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc11 C O2A ATP . A ATP 402 1_555 D MG MG . A MG 403 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc12 C O2A ATP . A ATP 402 1_555 E MG MG . A MG 404 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc13 C O2A ATP . A ATP 402 1_555 E MG MG . A MG 404 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc14 E MG MG . A MG 404 1_555 F O HOH . A HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc15 E MG MG . A MG 404 1_555 F O HOH . A HOH 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 132 n n N1 C10 FMN doub 133 n n C2 O2 FMN doub 134 n n C2 N3 FMN sing 135 n n N3 C4 FMN sing 136 n n N3 HN3 FMN sing 137 n n C4 O4 FMN doub 138 n n C4 C4A FMN sing 139 n n C4A N5 FMN doub 140 n n C4A C10 FMN sing 141 n n N5 C5A FMN sing 142 n n C5A C6 FMN doub 143 n y C5A C9A FMN sing 144 n y C6 C7 FMN sing 145 n y C6 H6 FMN sing 146 n n C7 C7M FMN sing 147 n n C7 C8 FMN doub 148 n y C7M HM71 FMN sing 149 n n C7M HM72 FMN sing 150 n n C7M HM73 FMN sing 151 n n C8 C8M FMN sing 152 n n C8 C9 FMN sing 153 n y C8M HM81 FMN sing 154 n n C8M HM82 FMN sing 155 n n C8M HM83 FMN sing 156 n n C9 C9A FMN doub 157 n y C9 H9 FMN sing 158 n n C9A N10 FMN sing 159 n n N10 C10 FMN sing 160 n n N10 C1' FMN sing 161 n n C1' C2' FMN sing 162 n n C1' "H1'1" FMN sing 163 n n C1' "H1'2" FMN sing 164 n n C2' O2' FMN sing 165 n n C2' C3' FMN sing 166 n n C2' H2' FMN sing 167 n n O2' HO2' FMN sing 168 n n C3' O3' FMN sing 169 n n C3' C4' FMN sing 170 n n C3' H3' FMN sing 171 n n O3' HO3' FMN sing 172 n n C4' O4' FMN sing 173 n n C4' C5' FMN sing 174 n n C4' H4' FMN sing 175 n n O4' HO4' FMN sing 176 n n C5' O5' FMN sing 177 n n C5' "H5'1" FMN sing 178 n n C5' "H5'2" FMN sing 179 n n O5' P FMN sing 180 n n P O1P FMN doub 181 n n P O2P FMN sing 182 n n P O3P FMN sing 183 n n O2P HOP2 FMN sing 184 n n O3P HOP3 FMN sing 185 n n # _atom_sites.entry_id 8QFH _atom_sites.fract_transf_matrix[1][1] 0.018416 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 1 FMN FMN . C 3 ATP A 1 402 2 ATP ATP . D 4 MG A 1 403 3 MG MG . E 4 MG A 1 404 4 MG MG . F 5 HOH A 1 501 52 HOH HOH . F 5 HOH A 2 502 35 HOH HOH . F 5 HOH A 3 503 48 HOH HOH . F 5 HOH A 4 504 43 HOH HOH . F 5 HOH A 5 505 36 HOH HOH . F 5 HOH A 6 506 65 HOH HOH . F 5 HOH A 7 507 72 HOH HOH . F 5 HOH A 8 508 76 HOH HOH . F 5 HOH A 9 509 71 HOH HOH . F 5 HOH A 10 510 67 HOH HOH . F 5 HOH A 11 511 49 HOH HOH . F 5 HOH A 12 512 56 HOH HOH . F 5 HOH A 13 513 54 HOH HOH . F 5 HOH A 14 514 13 HOH HOH . F 5 HOH A 15 515 45 HOH HOH . F 5 HOH A 16 516 30 HOH HOH . F 5 HOH A 17 517 64 HOH HOH . F 5 HOH A 18 518 37 HOH HOH . F 5 HOH A 19 519 80 HOH HOH . F 5 HOH A 20 520 22 HOH HOH . F 5 HOH A 21 521 47 HOH HOH . F 5 HOH A 22 522 8 HOH HOH . F 5 HOH A 23 523 39 HOH HOH . F 5 HOH A 24 524 16 HOH HOH . F 5 HOH A 25 525 68 HOH HOH . F 5 HOH A 26 526 9 HOH HOH . F 5 HOH A 27 527 62 HOH HOH . F 5 HOH A 28 528 42 HOH HOH . F 5 HOH A 29 529 4 HOH HOH . F 5 HOH A 30 530 2 HOH HOH . F 5 HOH A 31 531 20 HOH HOH . F 5 HOH A 32 532 19 HOH HOH . F 5 HOH A 33 533 17 HOH HOH . F 5 HOH A 34 534 27 HOH HOH . F 5 HOH A 35 535 11 HOH HOH . F 5 HOH A 36 536 31 HOH HOH . F 5 HOH A 37 537 50 HOH HOH . F 5 HOH A 38 538 23 HOH HOH . F 5 HOH A 39 539 10 HOH HOH . F 5 HOH A 40 540 63 HOH HOH . F 5 HOH A 41 541 28 HOH HOH . F 5 HOH A 42 542 40 HOH HOH . F 5 HOH A 43 543 74 HOH HOH . F 5 HOH A 44 544 3 HOH HOH . F 5 HOH A 45 545 5 HOH HOH . F 5 HOH A 46 546 6 HOH HOH . F 5 HOH A 47 547 38 HOH HOH . F 5 HOH A 48 548 7 HOH HOH . F 5 HOH A 49 549 34 HOH HOH . F 5 HOH A 50 550 51 HOH HOH . F 5 HOH A 51 551 14 HOH HOH . F 5 HOH A 52 552 18 HOH HOH . F 5 HOH A 53 553 12 HOH HOH . F 5 HOH A 54 554 44 HOH HOH . F 5 HOH A 55 555 26 HOH HOH . F 5 HOH A 56 556 24 HOH HOH . F 5 HOH A 57 557 75 HOH HOH . F 5 HOH A 58 558 81 HOH HOH . F 5 HOH A 59 559 41 HOH HOH . F 5 HOH A 60 560 58 HOH HOH . F 5 HOH A 61 561 15 HOH HOH . F 5 HOH A 62 562 55 HOH HOH . F 5 HOH A 63 563 1 HOH HOH . F 5 HOH A 64 564 21 HOH HOH . F 5 HOH A 65 565 57 HOH HOH . F 5 HOH A 66 566 46 HOH HOH . F 5 HOH A 67 567 25 HOH HOH . F 5 HOH A 68 568 29 HOH HOH . F 5 HOH A 69 569 53 HOH HOH . F 5 HOH A 70 570 79 HOH HOH . F 5 HOH A 71 571 59 HOH HOH . F 5 HOH A 72 572 66 HOH HOH . F 5 HOH A 73 573 33 HOH HOH . F 5 HOH A 74 574 61 HOH HOH . F 5 HOH A 75 575 60 HOH HOH . F 5 HOH A 76 576 32 HOH HOH . F 5 HOH A 77 577 69 HOH HOH . F 5 HOH A 78 578 73 HOH HOH . F 5 HOH A 79 579 78 HOH HOH . F 5 HOH A 80 580 70 HOH HOH . F 5 HOH A 81 581 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 -3.691 -11.393 -3.198 1 51.27 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . B 2 -5.026 -11.998 -3.274 1 56.74 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . B 2 -5.587 -12.307 -2.28 1 59.82 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . B 2 -5.657 -12.209 -4.598 1 50.59 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . B 2 -4.962 -11.825 -5.815 1 48.53 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . B 2 -5.481 -12.018 -6.865 1 49.76 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . B 2 -3.591 -11.198 -5.709 1 47.46 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . B 2 -2.865 -10.798 -6.884 1 46.03 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . B 2 -1.523 -10.183 -6.752 1 49.02 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . B 2 -0.85 -9.8 -7.918 1 44.22 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . B 2 0.412 -9.231 -7.802 1 47.67 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . B 2 0.864 -8.934 -9.226 1 46.58 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . B 2 0.996 -9.037 -6.547 1 47.22 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . B 2 2.376 -8.398 -6.545 1 44.84 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . B 2 0.327 -9.421 -5.391 1 47.73 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . B 2 -0.939 -9.992 -5.493 1 46.46 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . B 2 -1.69 -10.409 -4.274 1 44.08 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . B 2 -2.991 -10.998 -4.409 1 46.06 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . B 2 -1.126 -10.282 -2.937 1 48.63 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . B 2 -1.65 -9.144 -2.098 1 51.18 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . B 2 -1.017 -7.989 -2.58 1 50.49 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . B 2 -1.255 -9.426 -0.647 1 52.72 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . B 2 0.103 -9.765 -0.56 1 47.86 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . B 2 -2.005 -10.627 -0.075 1 55.44 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . B 2 -3.356 -10.602 -0.432 1 56.43 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . B 2 -1.883 -10.589 1.444 1 62.58 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . B 2 -2.224 -11.858 1.901 1 79.2 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . B 2 -2.167 -12.119 3.52 1 80.16 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . B 2 -3.04 -13.309 3.848 1 66.02 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . B 2 -0.741 -12.386 3.927 1 77.71 ? O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . B 2 -2.68 -10.869 4.196 1 66.14 ? O3P FMN 401 A 1 HETATM 32 H HN3 FMN . . . B 2 -6.569 -12.618 -4.654 1 60.7 ? HN3 FMN 401 A 1 HETATM 33 H H6 FMN . . . B 2 -1.304 -9.944 -8.89 1 53.06 ? H6 FMN 401 A 1 HETATM 34 H HM71 FMN . . . B 2 1.124 -9.864 -9.723 1 55.9 ? HM71 FMN 401 A 1 HETATM 35 H HM72 FMN . . . B 2 1.731 -8.281 -9.201 1 55.9 ? HM72 FMN 401 A 1 HETATM 36 H HM73 FMN . . . B 2 0.059 -8.447 -9.767 1 55.9 ? HM73 FMN 401 A 1 HETATM 37 H HM81 FMN . . . B 2 2.301 -7.376 -6.905 1 53.81 ? HM81 FMN 401 A 1 HETATM 38 H HM82 FMN . . . B 2 3.037 -8.963 -7.195 1 53.81 ? HM82 FMN 401 A 1 HETATM 39 H HM83 FMN . . . B 2 2.774 -8.399 -5.535 1 53.81 ? HM83 FMN 401 A 1 HETATM 40 H H9 FMN . . . B 2 0.785 -9.276 -4.421 1 57.27 ? H9 FMN 401 A 1 HETATM 41 H "H1'1" FMN . . . B 2 -1.324 -11.204 -2.405 1 58.35 ? "H1'1" FMN 401 A 1 HETATM 42 H "H1'2" FMN . . . B 2 -0.056 -10.149 -3.042 1 58.35 ? "H1'2" FMN 401 A 1 HETATM 43 H H2' FMN . . . B 2 -2.727 -9.027 -2.147 1 61.42 ? H2' FMN 401 A 1 HETATM 44 H HO2' FMN . . . B 2 -1.579 -7.238 -2.461 1 60.59 ? HO2' FMN 401 A 1 HETATM 45 H H3' FMN . . . B 2 -1.49 -8.522 -0.099 1 63.26 ? H3' FMN 401 A 1 HETATM 46 H H4' FMN . . . B 2 -1.572 -11.535 -0.475 1 66.53 ? H4' FMN 401 A 1 HETATM 47 H HO4' FMN . . . B 2 -3.781 -9.921 0.063 1 67.72 ? HO4' FMN 401 A 1 HETATM 48 H "H5'1" FMN . . . B 2 -2.56 -9.848 1.856 1 75.09 ? "H5'1" FMN 401 A 1 HETATM 49 H "H5'2" FMN . . . B 2 -0.865 -10.348 1.732 1 75.09 ? "H5'2" FMN 401 A 1 # _model_server_stats.io_time_ms 122 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 49 #