data_8QFJ # _model_server_result.job_id V4Lx_TWlAVxvjA9wpOXmug _model_server_result.datetime_utc '2025-07-17 07:14:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qfj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 8QFJ # _exptl.entry_id 8QFJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QFJ _cell.length_a 54.3 _cell.length_b 145.8 _cell.length_c 105.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QFJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 0 0 -52.65 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 156 A ASP 156 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc2 A OD2 ASP 156 A ASP 156 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc3 A O ILE 157 A ILE 157 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc4 A OD2 ASP 200 A ASP 200 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc5 A OD1 ASP 200 A ASP 200 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc6 C O2G ATP . A ATP 402 1_555 D MG MG . A MG 403 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc7 C O2G ATP . A ATP 402 1_555 D MG MG . A MG 403 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc8 C O1B ATP . A ATP 402 1_555 D MG MG . A MG 403 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc9 C O1B ATP . A ATP 402 1_555 D MG MG . A MG 403 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc10 C O2A ATP . A ATP 402 1_555 D MG MG . A MG 403 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc11 C O2A ATP . A ATP 402 1_555 D MG MG . A MG 403 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc12 C O2A ATP . A ATP 402 1_555 E MG MG . A MG 404 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc13 C O2A ATP . A ATP 402 1_555 E MG MG . A MG 404 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc14 E MG MG . A MG 404 1_555 F O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc15 E MG MG . A MG 404 1_555 F O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8QFJ _atom_sites.fract_transf_matrix[1][1] 0.018416 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 1 FMN FMN . C 3 ATP A 1 402 2 ATP ATP . D 4 MG A 1 403 3 MG MG . E 4 MG A 1 404 4 MG MG . F 5 HOH A 1 501 24 HOH HOH . F 5 HOH A 2 502 20 HOH HOH . F 5 HOH A 3 503 47 HOH HOH . F 5 HOH A 4 504 53 HOH HOH . F 5 HOH A 5 505 103 HOH HOH . F 5 HOH A 6 506 16 HOH HOH . F 5 HOH A 7 507 44 HOH HOH . F 5 HOH A 8 508 15 HOH HOH . F 5 HOH A 9 509 46 HOH HOH . F 5 HOH A 10 510 62 HOH HOH . F 5 HOH A 11 511 71 HOH HOH . F 5 HOH A 12 512 59 HOH HOH . F 5 HOH A 13 513 17 HOH HOH . F 5 HOH A 14 514 11 HOH HOH . F 5 HOH A 15 515 5 HOH HOH . F 5 HOH A 16 516 81 HOH HOH . F 5 HOH A 17 517 6 HOH HOH . F 5 HOH A 18 518 13 HOH HOH . F 5 HOH A 19 519 2 HOH HOH . F 5 HOH A 20 520 98 HOH HOH . F 5 HOH A 21 521 63 HOH HOH . F 5 HOH A 22 522 9 HOH HOH . F 5 HOH A 23 523 4 HOH HOH . F 5 HOH A 24 524 26 HOH HOH . F 5 HOH A 25 525 21 HOH HOH . F 5 HOH A 26 526 45 HOH HOH . F 5 HOH A 27 527 1 HOH HOH . F 5 HOH A 28 528 12 HOH HOH . F 5 HOH A 29 529 107 HOH HOH . F 5 HOH A 30 530 27 HOH HOH . F 5 HOH A 31 531 125 HOH HOH . F 5 HOH A 32 532 19 HOH HOH . F 5 HOH A 33 533 3 HOH HOH . F 5 HOH A 34 534 28 HOH HOH . F 5 HOH A 35 535 117 HOH HOH . F 5 HOH A 36 536 77 HOH HOH . F 5 HOH A 37 537 25 HOH HOH . F 5 HOH A 38 538 114 HOH HOH . F 5 HOH A 39 539 50 HOH HOH . F 5 HOH A 40 540 48 HOH HOH . F 5 HOH A 41 541 29 HOH HOH . F 5 HOH A 42 542 14 HOH HOH . F 5 HOH A 43 543 18 HOH HOH . F 5 HOH A 44 544 7 HOH HOH . F 5 HOH A 45 545 88 HOH HOH . F 5 HOH A 46 546 69 HOH HOH . F 5 HOH A 47 547 102 HOH HOH . F 5 HOH A 48 548 122 HOH HOH . F 5 HOH A 49 549 116 HOH HOH . F 5 HOH A 50 550 35 HOH HOH . F 5 HOH A 51 551 22 HOH HOH . F 5 HOH A 52 552 36 HOH HOH . F 5 HOH A 53 553 52 HOH HOH . F 5 HOH A 54 554 8 HOH HOH . F 5 HOH A 55 555 120 HOH HOH . F 5 HOH A 56 556 91 HOH HOH . F 5 HOH A 57 557 23 HOH HOH . F 5 HOH A 58 558 40 HOH HOH . F 5 HOH A 59 559 92 HOH HOH . F 5 HOH A 60 560 10 HOH HOH . F 5 HOH A 61 561 70 HOH HOH . F 5 HOH A 62 562 87 HOH HOH . F 5 HOH A 63 563 121 HOH HOH . F 5 HOH A 64 564 64 HOH HOH . F 5 HOH A 65 565 76 HOH HOH . F 5 HOH A 66 566 127 HOH HOH . F 5 HOH A 67 567 38 HOH HOH . F 5 HOH A 68 568 56 HOH HOH . F 5 HOH A 69 569 124 HOH HOH . F 5 HOH A 70 570 74 HOH HOH . F 5 HOH A 71 571 37 HOH HOH . F 5 HOH A 72 572 83 HOH HOH . F 5 HOH A 73 573 30 HOH HOH . F 5 HOH A 74 574 99 HOH HOH . F 5 HOH A 75 575 57 HOH HOH . F 5 HOH A 76 576 58 HOH HOH . F 5 HOH A 77 577 34 HOH HOH . F 5 HOH A 78 578 33 HOH HOH . F 5 HOH A 79 579 113 HOH HOH . F 5 HOH A 80 580 75 HOH HOH . F 5 HOH A 81 581 51 HOH HOH . F 5 HOH A 82 582 94 HOH HOH . F 5 HOH A 83 583 68 HOH HOH . F 5 HOH A 84 584 105 HOH HOH . F 5 HOH A 85 585 39 HOH HOH . F 5 HOH A 86 586 115 HOH HOH . F 5 HOH A 87 587 111 HOH HOH . F 5 HOH A 88 588 67 HOH HOH . F 5 HOH A 89 589 60 HOH HOH . F 5 HOH A 90 590 32 HOH HOH . F 5 HOH A 91 591 108 HOH HOH . F 5 HOH A 92 592 54 HOH HOH . F 5 HOH A 93 593 96 HOH HOH . F 5 HOH A 94 594 42 HOH HOH . F 5 HOH A 95 595 95 HOH HOH . F 5 HOH A 96 596 41 HOH HOH . F 5 HOH A 97 597 43 HOH HOH . F 5 HOH A 98 598 84 HOH HOH . F 5 HOH A 99 599 72 HOH HOH . F 5 HOH A 100 600 110 HOH HOH . F 5 HOH A 101 601 97 HOH HOH . F 5 HOH A 102 602 112 HOH HOH . F 5 HOH A 103 603 106 HOH HOH . F 5 HOH A 104 604 78 HOH HOH . F 5 HOH A 105 605 119 HOH HOH . F 5 HOH A 106 606 31 HOH HOH . F 5 HOH A 107 607 61 HOH HOH . F 5 HOH A 108 608 80 HOH HOH . F 5 HOH A 109 609 66 HOH HOH . F 5 HOH A 110 610 85 HOH HOH . F 5 HOH A 111 611 79 HOH HOH . F 5 HOH A 112 612 65 HOH HOH . F 5 HOH A 113 613 93 HOH HOH . F 5 HOH A 114 614 118 HOH HOH . F 5 HOH A 115 615 55 HOH HOH . F 5 HOH A 116 616 123 HOH HOH . F 5 HOH A 117 617 73 HOH HOH . F 5 HOH A 118 618 100 HOH HOH . F 5 HOH A 119 619 109 HOH HOH . F 5 HOH A 120 620 49 HOH HOH . F 5 HOH A 121 621 89 HOH HOH . F 5 HOH A 122 622 104 HOH HOH . F 5 HOH A 123 623 86 HOH HOH . F 5 HOH A 124 624 82 HOH HOH . F 5 HOH A 125 625 126 HOH HOH . F 5 HOH A 126 626 101 HOH HOH . F 5 HOH A 127 627 90 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 6.791 _atom_site.Cartn_y 33.245 _atom_site.Cartn_z -18.334 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #