data_8QFN # _model_server_result.job_id Q8RzBBeA7o0TAw9QMbs4Ew _model_server_result.datetime_utc '2024-11-08 12:35:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qfn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":207}' # _entry.id 8QFN # _exptl.entry_id 8QFN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QFN _cell.length_a 44.507 _cell.length_b 59.209 _cell.length_c 134.572 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QFN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 41 A GLU 41 1_555 H MG MG . A MG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc2 A NE2 HIS 88 A HIS 88 1_555 I MN MN . A MN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc3 A NE2 HIS 90 A HIS 90 1_555 I MN MN . A MN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc4 A NE2 HIS 134 A HIS 134 1_555 I MN MN . A MN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc5 C O ACT . A ACT 201 1_555 I MN MN . A MN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc6 H MG MG . A MG 206 3_654 B OE2 GLU 22 B GLU 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc7 H MG MG . A MG 206 3_654 B OD1 ASP 69 B ASP 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc8 H MG MG . A MG 206 1_555 M O HOH . B HOH 310 3_644 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc9 H MG MG . A MG 206 1_555 M O HOH . B HOH 343 3_644 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc10 I MN MN . A MN 207 1_555 L O HOH . A HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc11 I MN MN . A MN 207 1_555 L O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc12 B NE2 HIS 88 B HIS 88 1_555 K MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc13 B NE2 HIS 90 B HIS 90 1_555 K MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc14 B NE2 HIS 134 B HIS 134 1_555 K MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc15 J O ACT . B ACT 201 1_555 K MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc16 K MN MN . B MN 202 1_555 M O HOH . B HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc17 K MN MN . B MN 202 1_555 M O HOH . B HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8QFN _atom_sites.fract_transf_matrix[1][1] 0.022468 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007431 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT A 1 201 222 ACT AOH . D 3 PG4 A 1 202 322 PG4 PG4 . E 4 EDO A 1 203 522 EDO EDO . F 2 ACT A 1 204 722 ACT AOH . G 2 ACT A 1 205 822 ACT AOH . H 5 MG A 1 206 1 MG MG . I 6 MN A 1 207 2 MN MN . J 2 ACT B 1 201 222 ACT AOH . K 6 MN B 1 202 1 MN MN . L 7 HOH A 1 301 92 HOH HOH . L 7 HOH A 2 302 152 HOH HOH . L 7 HOH A 3 303 210 HOH HOH . L 7 HOH A 4 304 83 HOH HOH . L 7 HOH A 5 305 52 HOH HOH . L 7 HOH A 6 306 93 HOH HOH . L 7 HOH A 7 307 110 HOH HOH . L 7 HOH A 8 308 223 HOH HOH . L 7 HOH A 9 309 220 HOH HOH . L 7 HOH A 10 310 179 HOH HOH . L 7 HOH A 11 311 24 HOH HOH . L 7 HOH A 12 312 192 HOH HOH . L 7 HOH A 13 313 39 HOH HOH . L 7 HOH A 14 314 98 HOH HOH . L 7 HOH A 15 315 43 HOH HOH . L 7 HOH A 16 316 13 HOH HOH . L 7 HOH A 17 317 31 HOH HOH . L 7 HOH A 18 318 66 HOH HOH . L 7 HOH A 19 319 228 HOH HOH . L 7 HOH A 20 320 15 HOH HOH . L 7 HOH A 21 321 149 HOH HOH . L 7 HOH A 22 322 71 HOH HOH . L 7 HOH A 23 323 33 HOH HOH . L 7 HOH A 24 324 82 HOH HOH . L 7 HOH A 25 325 194 HOH HOH . L 7 HOH A 26 326 170 HOH HOH . L 7 HOH A 27 327 184 HOH HOH . L 7 HOH A 28 328 65 HOH HOH . L 7 HOH A 29 329 191 HOH HOH . L 7 HOH A 30 330 187 HOH HOH . L 7 HOH A 31 331 67 HOH HOH . L 7 HOH A 32 332 45 HOH HOH . L 7 HOH A 33 333 42 HOH HOH . L 7 HOH A 34 334 50 HOH HOH . L 7 HOH A 35 335 221 HOH HOH . L 7 HOH A 36 336 198 HOH HOH . L 7 HOH A 37 337 225 HOH HOH . L 7 HOH A 38 338 57 HOH HOH . L 7 HOH A 39 339 12 HOH HOH . L 7 HOH A 40 340 115 HOH HOH . L 7 HOH A 41 341 105 HOH HOH . L 7 HOH A 42 342 226 HOH HOH . L 7 HOH A 43 343 36 HOH HOH . L 7 HOH A 44 344 61 HOH HOH . L 7 HOH A 45 345 156 HOH HOH . L 7 HOH A 46 346 73 HOH HOH . L 7 HOH A 47 347 26 HOH HOH . L 7 HOH A 48 348 77 HOH HOH . L 7 HOH A 49 349 90 HOH HOH . L 7 HOH A 50 350 9 HOH HOH . L 7 HOH A 51 351 64 HOH HOH . L 7 HOH A 52 352 104 HOH HOH . L 7 HOH A 53 353 62 HOH HOH . L 7 HOH A 54 354 118 HOH HOH . L 7 HOH A 55 355 162 HOH HOH . L 7 HOH A 56 356 89 HOH HOH . L 7 HOH A 57 357 16 HOH HOH . L 7 HOH A 58 358 100 HOH HOH . L 7 HOH A 59 359 180 HOH HOH . L 7 HOH A 60 360 101 HOH HOH . L 7 HOH A 61 361 70 HOH HOH . L 7 HOH A 62 362 80 HOH HOH . L 7 HOH A 63 363 108 HOH HOH . L 7 HOH A 64 364 107 HOH HOH . L 7 HOH A 65 365 95 HOH HOH . L 7 HOH A 66 366 34 HOH HOH . L 7 HOH A 67 367 159 HOH HOH . L 7 HOH A 68 368 79 HOH HOH . L 7 HOH A 69 369 209 HOH HOH . L 7 HOH A 70 370 35 HOH HOH . L 7 HOH A 71 371 76 HOH HOH . L 7 HOH A 72 372 114 HOH HOH . L 7 HOH A 73 373 103 HOH HOH . L 7 HOH A 74 374 176 HOH HOH . L 7 HOH A 75 375 68 HOH HOH . L 7 HOH A 76 376 41 HOH HOH . L 7 HOH A 77 377 69 HOH HOH . L 7 HOH A 78 378 119 HOH HOH . L 7 HOH A 79 379 97 HOH HOH . L 7 HOH A 80 380 140 HOH HOH . L 7 HOH A 81 381 185 HOH HOH . L 7 HOH A 82 382 205 HOH HOH . L 7 HOH A 83 383 178 HOH HOH . L 7 HOH A 84 384 193 HOH HOH . L 7 HOH A 85 385 227 HOH HOH . L 7 HOH A 86 386 120 HOH HOH . L 7 HOH A 87 387 137 HOH HOH . L 7 HOH A 88 388 222 HOH HOH . L 7 HOH A 89 389 165 HOH HOH . L 7 HOH A 90 390 155 HOH HOH . L 7 HOH A 91 391 213 HOH HOH . L 7 HOH A 92 392 174 HOH HOH . L 7 HOH A 93 393 151 HOH HOH . L 7 HOH A 94 394 186 HOH HOH . L 7 HOH A 95 395 206 HOH HOH . L 7 HOH A 96 396 123 HOH HOH . L 7 HOH A 97 397 157 HOH HOH . L 7 HOH A 98 398 169 HOH HOH . L 7 HOH A 99 399 200 HOH HOH . L 7 HOH A 100 400 129 HOH HOH . L 7 HOH A 101 401 132 HOH HOH . L 7 HOH A 102 402 112 HOH HOH . L 7 HOH A 103 403 161 HOH HOH . L 7 HOH A 104 404 219 HOH HOH . L 7 HOH A 105 405 207 HOH HOH . M 7 HOH B 1 301 58 HOH HOH . M 7 HOH B 2 302 202 HOH HOH . M 7 HOH B 3 303 122 HOH HOH . M 7 HOH B 4 304 208 HOH HOH . M 7 HOH B 5 305 172 HOH HOH . M 7 HOH B 6 306 49 HOH HOH . M 7 HOH B 7 307 87 HOH HOH . M 7 HOH B 8 308 78 HOH HOH . M 7 HOH B 9 309 59 HOH HOH . M 7 HOH B 10 310 211 HOH HOH . M 7 HOH B 11 311 10 HOH HOH . M 7 HOH B 12 312 113 HOH HOH . M 7 HOH B 13 313 44 HOH HOH . M 7 HOH B 14 314 85 HOH HOH . M 7 HOH B 15 315 11 HOH HOH . M 7 HOH B 16 316 91 HOH HOH . M 7 HOH B 17 317 139 HOH HOH . M 7 HOH B 18 318 60 HOH HOH . M 7 HOH B 19 319 28 HOH HOH . M 7 HOH B 20 320 74 HOH HOH . M 7 HOH B 21 321 46 HOH HOH . M 7 HOH B 22 322 51 HOH HOH . M 7 HOH B 23 323 203 HOH HOH . M 7 HOH B 24 324 6 HOH HOH . M 7 HOH B 25 325 37 HOH HOH . M 7 HOH B 26 326 7 HOH HOH . M 7 HOH B 27 327 20 HOH HOH . M 7 HOH B 28 328 4 HOH HOH . M 7 HOH B 29 329 212 HOH HOH . M 7 HOH B 30 330 63 HOH HOH . M 7 HOH B 31 331 196 HOH HOH . M 7 HOH B 32 332 38 HOH HOH . M 7 HOH B 33 333 22 HOH HOH . M 7 HOH B 34 334 47 HOH HOH . M 7 HOH B 35 335 102 HOH HOH . M 7 HOH B 36 336 21 HOH HOH . M 7 HOH B 37 337 173 HOH HOH . M 7 HOH B 38 338 130 HOH HOH . M 7 HOH B 39 339 19 HOH HOH . M 7 HOH B 40 340 23 HOH HOH . M 7 HOH B 41 341 86 HOH HOH . M 7 HOH B 42 342 109 HOH HOH . M 7 HOH B 43 343 2 HOH HOH . M 7 HOH B 44 344 17 HOH HOH . M 7 HOH B 45 345 124 HOH HOH . M 7 HOH B 46 346 117 HOH HOH . M 7 HOH B 47 347 153 HOH HOH . M 7 HOH B 48 348 126 HOH HOH . M 7 HOH B 49 349 3 HOH HOH . M 7 HOH B 50 350 29 HOH HOH . M 7 HOH B 51 351 32 HOH HOH . M 7 HOH B 52 352 143 HOH HOH . M 7 HOH B 53 353 84 HOH HOH . M 7 HOH B 54 354 56 HOH HOH . M 7 HOH B 55 355 30 HOH HOH . M 7 HOH B 56 356 145 HOH HOH . M 7 HOH B 57 357 48 HOH HOH . M 7 HOH B 58 358 75 HOH HOH . M 7 HOH B 59 359 111 HOH HOH . M 7 HOH B 60 360 54 HOH HOH . M 7 HOH B 61 361 88 HOH HOH . M 7 HOH B 62 362 224 HOH HOH . M 7 HOH B 63 363 8 HOH HOH . M 7 HOH B 64 364 181 HOH HOH . M 7 HOH B 65 365 136 HOH HOH . M 7 HOH B 66 366 27 HOH HOH . M 7 HOH B 67 367 158 HOH HOH . M 7 HOH B 68 368 55 HOH HOH . M 7 HOH B 69 369 72 HOH HOH . M 7 HOH B 70 370 18 HOH HOH . M 7 HOH B 71 371 53 HOH HOH . M 7 HOH B 72 372 14 HOH HOH . M 7 HOH B 73 373 134 HOH HOH . M 7 HOH B 74 374 5 HOH HOH . M 7 HOH B 75 375 106 HOH HOH . M 7 HOH B 76 376 144 HOH HOH . M 7 HOH B 77 377 40 HOH HOH . M 7 HOH B 78 378 116 HOH HOH . M 7 HOH B 79 379 133 HOH HOH . M 7 HOH B 80 380 195 HOH HOH . M 7 HOH B 81 381 164 HOH HOH . M 7 HOH B 82 382 121 HOH HOH . M 7 HOH B 83 383 199 HOH HOH . M 7 HOH B 84 384 150 HOH HOH . M 7 HOH B 85 385 201 HOH HOH . M 7 HOH B 86 386 168 HOH HOH . M 7 HOH B 87 387 216 HOH HOH . M 7 HOH B 88 388 171 HOH HOH . M 7 HOH B 89 389 163 HOH HOH . M 7 HOH B 90 390 96 HOH HOH . M 7 HOH B 91 391 197 HOH HOH . M 7 HOH B 92 392 189 HOH HOH . M 7 HOH B 93 393 215 HOH HOH . M 7 HOH B 94 394 125 HOH HOH . M 7 HOH B 95 395 218 HOH HOH . M 7 HOH B 96 396 217 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 6 _atom_site.Cartn_x 7.72 _atom_site.Cartn_y -4.412 _atom_site.Cartn_z -27.708 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 207 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #