data_8QFZ
#
_model_server_result.job_id            OLk0l2VNIXmMZTtYxkWcAw 
_model_server_result.datetime_utc      '2024-12-21 16:16:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8qfz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":101}' 
#
_entry.id    8QFZ 
#
_exptl.entry_id    8QFZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              492.002 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[3,5-bis(3-bromanylpropanoyl)-1,3,5-triazinan-1-yl]-3-bromanyl-propan-1-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8QFZ 
_cell.length_a            45.92 
_cell.length_b            52.349 
_cell.length_c            65.829 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8QFZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 34 1_555 A SG CYS 83 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
disulf ? disulf2 A SG CYS 42 A CYS 69 1_555 A SG CYS 48 A CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
disulf ? disulf3 A SG CYS 63 A CYS 90 1_555 A SG CYS 110 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
covale ? covale1 B SG CYS 1 B CYS 11 1_555 C C12 LFI . B LFI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.715 ? 
covale ? covale2 B SG CYS 7 B CYS 17 1_555 C C10 LFI . B LFI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.723 ? 
covale ? covale3 B SG CYS 12 B CYS 22 1_555 C C11 LFI . B LFI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? 
#
_chem_comp.formula           'C12 H18 Br3 N3 O3' 
_chem_comp.formula_weight    492.002 
_chem_comp.id                LFI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[3,5-bis(3-bromanylpropanoyl)-1,3,5-triazinan-1-yl]-3-bromanyl-propan-1-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Chemical crosslinker' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C6 LFI doub 194 n n 
C8 C10 LFI sing 195 n n 
C8 C4 LFI sing 196 n n 
C1 N2 LFI sing 197 n n 
C1 N1 LFI sing 198 n n 
C6 N2 LFI sing 199 n n 
C6 C7 LFI sing 200 n n 
C4 N1 LFI sing 201 n n 
C4 O2 LFI doub 202 n n 
N2 C2 LFI sing 203 n n 
N1 C3 LFI sing 204 n n 
C7 C12 LFI sing 205 n n 
C3 N3 LFI sing 206 n n 
C2 N3 LFI sing 207 n n 
N3 C5 LFI sing 208 n n 
C5 O3 LFI doub 209 n n 
C5 C9 LFI sing 210 n n 
C9 C11 LFI sing 211 n n 
C10 H1 LFI sing 212 n n 
C10 H2 LFI sing 213 n n 
C11 H4 LFI sing 214 n n 
C11 H5 LFI sing 215 n n 
C12 H7 LFI sing 216 n n 
C12 H8 LFI sing 217 n n 
C1 H10 LFI sing 218 n n 
C1 H11 LFI sing 219 n n 
C2 H12 LFI sing 220 n n 
C2 H13 LFI sing 221 n n 
C3 H14 LFI sing 222 n n 
C3 H15 LFI sing 223 n n 
C7 H16 LFI sing 224 n n 
C7 H17 LFI sing 225 n n 
C8 H18 LFI sing 226 n n 
C8 H19 LFI sing 227 n n 
C9 H20 LFI sing 228 n n 
C9 H21 LFI sing 229 n n 
C10 BR1 LFI sing 230 n n 
C12 BR2 LFI sing 231 n n 
C11 BR3 LFI sing 232 n n 
#
_atom_sites.entry_id                     8QFZ 
_atom_sites.fract_transf_matrix[1][1]    0.021777 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019102 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015191 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 LFI B 1 101 1 LFI INH . 
D 4 HOH A 1 201 88 HOH HOH . 
D 4 HOH A 2 202 19 HOH HOH . 
D 4 HOH A 3 203 80 HOH HOH . 
D 4 HOH A 4 204 37 HOH HOH . 
D 4 HOH A 5 205 24 HOH HOH . 
D 4 HOH A 6 206 54 HOH HOH . 
D 4 HOH A 7 207 35 HOH HOH . 
D 4 HOH A 8 208 43 HOH HOH . 
D 4 HOH A 9 209 22 HOH HOH . 
D 4 HOH A 10 210 56 HOH HOH . 
D 4 HOH A 11 211 23 HOH HOH . 
D 4 HOH A 12 212 3 HOH HOH . 
D 4 HOH A 13 213 26 HOH HOH . 
D 4 HOH A 14 214 60 HOH HOH . 
D 4 HOH A 15 215 27 HOH HOH . 
D 4 HOH A 16 216 46 HOH HOH . 
D 4 HOH A 17 217 82 HOH HOH . 
D 4 HOH A 18 218 13 HOH HOH . 
D 4 HOH A 19 219 68 HOH HOH . 
D 4 HOH A 20 220 39 HOH HOH . 
D 4 HOH A 21 221 17 HOH HOH . 
D 4 HOH A 22 222 64 HOH HOH . 
D 4 HOH A 23 223 34 HOH HOH . 
D 4 HOH A 24 224 4 HOH HOH . 
D 4 HOH A 25 225 71 HOH HOH . 
D 4 HOH A 26 226 21 HOH HOH . 
D 4 HOH A 27 227 28 HOH HOH . 
D 4 HOH A 28 228 44 HOH HOH . 
D 4 HOH A 29 229 41 HOH HOH . 
D 4 HOH A 30 230 81 HOH HOH . 
D 4 HOH A 31 231 83 HOH HOH . 
D 4 HOH A 32 232 10 HOH HOH . 
D 4 HOH A 33 233 49 HOH HOH . 
D 4 HOH A 34 234 25 HOH HOH . 
D 4 HOH A 35 235 8 HOH HOH . 
D 4 HOH A 36 236 48 HOH HOH . 
D 4 HOH A 37 237 58 HOH HOH . 
D 4 HOH A 38 238 53 HOH HOH . 
D 4 HOH A 39 239 6 HOH HOH . 
D 4 HOH A 40 240 2 HOH HOH . 
D 4 HOH A 41 241 57 HOH HOH . 
D 4 HOH A 42 242 69 HOH HOH . 
D 4 HOH A 43 243 61 HOH HOH . 
D 4 HOH A 44 244 74 HOH HOH . 
D 4 HOH A 45 245 52 HOH HOH . 
D 4 HOH A 46 246 30 HOH HOH . 
D 4 HOH A 47 247 16 HOH HOH . 
D 4 HOH A 48 248 47 HOH HOH . 
D 4 HOH A 49 249 14 HOH HOH . 
D 4 HOH A 50 250 77 HOH HOH . 
D 4 HOH A 51 251 78 HOH HOH . 
D 4 HOH A 52 252 65 HOH HOH . 
D 4 HOH A 53 253 42 HOH HOH . 
D 4 HOH A 54 254 62 HOH HOH . 
D 4 HOH A 55 255 73 HOH HOH . 
D 4 HOH A 56 256 84 HOH HOH . 
D 4 HOH A 57 257 85 HOH HOH . 
D 4 HOH A 58 258 79 HOH HOH . 
D 4 HOH A 59 259 87 HOH HOH . 
D 4 HOH A 60 260 89 HOH HOH . 
E 4 HOH B 1 201 7 HOH HOH . 
E 4 HOH B 2 202 9 HOH HOH . 
E 4 HOH B 3 203 38 HOH HOH . 
E 4 HOH B 4 204 51 HOH HOH . 
E 4 HOH B 5 205 1 HOH HOH . 
E 4 HOH B 6 206 76 HOH HOH . 
E 4 HOH B 7 207 31 HOH HOH . 
E 4 HOH B 8 208 75 HOH HOH . 
E 4 HOH B 9 209 59 HOH HOH . 
E 4 HOH B 10 210 12 HOH HOH . 
E 4 HOH B 11 211 45 HOH HOH . 
E 4 HOH B 12 212 15 HOH HOH . 
E 4 HOH B 13 213 20 HOH HOH . 
E 4 HOH B 14 214 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 LFI . . . C 3 -15.31 -17.634 2.662 1 19.49 ? C10 LFI 101 B 1 
HETATM 2 C C11 LFI . . . C 3 -19.515 -17.944 -2.516 1 17.19 ? C11 LFI 101 B 1 
HETATM 3 C C12 LFI . . . C 3 -13.385 -20.836 -3.856 1 22.33 ? C12 LFI 101 B 1 
HETATM 4 C C1 LFI . . . C 3 -13.348 -16.864 -1.947 1 22.68 ? C1 LFI 101 B 1 
HETATM 5 C C2 LFI . . . C 3 -15.21 -16.173 -3.481 1 24.19 ? C2 LFI 101 B 1 
HETATM 6 C C3 LFI . . . C 3 -15.305 -15.579 -1.143 1 18.93 ? C3 LFI 101 B 1 
HETATM 7 C C4 LFI . . . C 3 -14.291 -17.157 0.374 1 17.43 ? C4 LFI 101 B 1 
HETATM 8 C C5 LFI . . . C 3 -17.35 -16.562 -2.115 1 21.16 ? C5 LFI 101 B 1 
HETATM 9 C C6 LFI . . . C 3 -14.341 -18.507 -3.537 1 22.69 ? C6 LFI 101 B 1 
HETATM 10 C C7 LFI . . . C 3 -13.343 -19.566 -3.036 1 20.31 ? C7 LFI 101 B 1 
HETATM 11 C C8 LFI . . . C 3 -15.425 -16.875 1.341 1 18.71 ? C8 LFI 101 B 1 
HETATM 12 C C9 LFI . . . C 3 -18.219 -17.198 -3.166 1 20.42 ? C9 LFI 101 B 1 
HETATM 13 N N1 LFI . . . C 3 -14.291 -16.587 -0.824 1 20.07 ? N1 LFI 101 B 1 
HETATM 14 N N2 LFI . . . C 3 -14.248 -17.249 -3.056 1 21.98 ? N2 LFI 101 B 1 
HETATM 15 N N3 LFI . . . C 3 -16.052 -16.099 -2.279 1 19.17 ? N3 LFI 101 B 1 
HETATM 16 O O1 LFI . . . C 3 -15.188 -18.809 -4.391 1 23.64 ? O1 LFI 101 B 1 
HETATM 17 O O2 LFI . . . C 3 -13.474 -18.004 0.611 1 19 ? O2 LFI 101 B 1 
HETATM 18 O O3 LFI . . . C 3 -17.831 -16.486 -0.993 1 19.89 ? O3 LFI 101 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           18 
#