data_8QG7
#
_model_server_result.job_id            CXZEEj2SSotUvlTA4wU3pA 
_model_server_result.datetime_utc      '2025-06-24 19:36:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8qg7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    8QG7 
#
_exptl.entry_id    8QG7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              635.631 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl-pent-4-ynyl-amino]methyl]oxolane-3,4-diol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8QG7 
_cell.length_a            63.376 
_cell.length_b            75.308 
_cell.length_c            118.605 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8QG7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    'I 2 2' 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 1 2 
A,B,C,D 1 3 
A,B,C,D 1 4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 63.376 0 0 
3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 63.376 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C28 H33 N11 O7' 
_chem_comp.formula_weight    635.631 
_chem_comp.id                UXO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl-pent-4-ynyl-amino]methyl]oxolane-3,4-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C UXO sing 378 n n 
C N1 UXO doub 379 n y 
N1 C1 UXO sing 380 n y 
C1 N2 UXO doub 381 n y 
N2 C2 UXO sing 382 n y 
C2 C3 UXO doub 383 n y 
C C3 UXO sing 384 n y 
C3 N3 UXO sing 385 n y 
N3 C4 UXO doub 386 n y 
C4 N4 UXO sing 387 n y 
C2 N4 UXO sing 388 n y 
N4 C5 UXO sing 389 n n 
C5 O UXO sing 390 n n 
O C6 UXO sing 391 n n 
C7 C6 UXO sing 392 n n 
N5 C7 UXO sing 393 n n 
C8 N5 UXO sing 394 n n 
C9 C8 UXO sing 395 n n 
C10 C9 UXO sing 396 n n 
C11 C10 UXO sing 397 n n 
C12 C11 UXO trip 398 n n 
C13 N5 UXO sing 399 n n 
C14 C13 UXO sing 400 n n 
C15 C14 UXO trip 401 n n 
C16 C15 UXO sing 402 n n 
C16 N6 UXO doub 403 n y 
N6 C17 UXO sing 404 n y 
C17 C18 UXO doub 405 n y 
N7 C18 UXO sing 406 n y 
C19 N7 UXO doub 407 n y 
N8 C19 UXO sing 408 n y 
C20 N8 UXO doub 409 n y 
C17 C20 UXO sing 410 n y 
N9 C20 UXO sing 411 n n 
C18 N10 UXO sing 412 n y 
N10 C16 UXO sing 413 n y 
C21 N10 UXO sing 414 n n 
C21 O1 UXO sing 415 n n 
O1 C22 UXO sing 416 n n 
C23 C22 UXO sing 417 n n 
O2 C23 UXO sing 418 n n 
C22 C24 UXO sing 419 n n 
O3 C24 UXO sing 420 n n 
C24 C25 UXO sing 421 n n 
C25 C21 UXO sing 422 n n 
O4 C25 UXO sing 423 n n 
C6 C26 UXO sing 424 n n 
O5 C26 UXO sing 425 n n 
C26 C27 UXO sing 426 n n 
C5 C27 UXO sing 427 n n 
C27 O6 UXO sing 428 n n 
C7 H8 UXO sing 429 n n 
C7 H9 UXO sing 430 n n 
C8 H10 UXO sing 431 n n 
C8 H11 UXO sing 432 n n 
C9 H12 UXO sing 433 n n 
C9 H13 UXO sing 434 n n 
C1 H6 UXO sing 435 n n 
O5 H30 UXO sing 436 n n 
C5 H UXO sing 437 n n 
C6 H1 UXO sing 438 n n 
C4 H7 UXO sing 439 n n 
O4 H28 UXO sing 440 n n 
O3 H26 UXO sing 441 n n 
N H5 UXO sing 442 n n 
N H4 UXO sing 443 n n 
C10 H15 UXO sing 444 n n 
C10 H14 UXO sing 445 n n 
C12 H16 UXO sing 446 n n 
C13 H18 UXO sing 447 n n 
C13 H17 UXO sing 448 n n 
C19 H19 UXO sing 449 n n 
C21 H2 UXO sing 450 n n 
C22 H3 UXO sing 451 n n 
C23 H23 UXO sing 452 n n 
C23 H22 UXO sing 453 n n 
C24 H25 UXO sing 454 n n 
C25 H27 UXO sing 455 n n 
C26 H29 UXO sing 456 n n 
C27 H31 UXO sing 457 n n 
N9 H21 UXO sing 458 n n 
N9 H20 UXO sing 459 n n 
O2 H24 UXO sing 460 n n 
O6 H32 UXO sing 461 n n 
#
_atom_sites.entry_id                     8QG7 
_atom_sites.fract_transf_matrix[1][1]    0.015779 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013279 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008431 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CIT A 1 301 1 CIT CIT . 
C 3 UXO A 1 302 1 UXO XXX . 
D 4 HOH A 1 401 4 HOH HOH . 
D 4 HOH A 2 402 49 HOH HOH . 
D 4 HOH A 3 403 3 HOH HOH . 
D 4 HOH A 4 404 25 HOH HOH . 
D 4 HOH A 5 405 54 HOH HOH . 
D 4 HOH A 6 406 5 HOH HOH . 
D 4 HOH A 7 407 2 HOH HOH . 
D 4 HOH A 8 408 1 HOH HOH . 
D 4 HOH A 9 409 38 HOH HOH . 
D 4 HOH A 10 410 43 HOH HOH . 
D 4 HOH A 11 411 45 HOH HOH . 
D 4 HOH A 12 412 6 HOH HOH . 
D 4 HOH A 13 413 26 HOH HOH . 
D 4 HOH A 14 414 9 HOH HOH . 
D 4 HOH A 15 415 31 HOH HOH . 
D 4 HOH A 16 416 37 HOH HOH . 
D 4 HOH A 17 417 7 HOH HOH . 
D 4 HOH A 18 418 8 HOH HOH . 
D 4 HOH A 19 419 44 HOH HOH . 
D 4 HOH A 20 420 47 HOH HOH . 
D 4 HOH A 21 421 16 HOH HOH . 
D 4 HOH A 22 422 29 HOH HOH . 
D 4 HOH A 23 423 46 HOH HOH . 
D 4 HOH A 24 424 39 HOH HOH . 
D 4 HOH A 25 425 40 HOH HOH . 
D 4 HOH A 26 426 13 HOH HOH . 
D 4 HOH A 27 427 32 HOH HOH . 
D 4 HOH A 28 428 21 HOH HOH . 
D 4 HOH A 29 429 41 HOH HOH . 
D 4 HOH A 30 430 30 HOH HOH . 
D 4 HOH A 31 431 12 HOH HOH . 
D 4 HOH A 32 432 17 HOH HOH . 
D 4 HOH A 33 433 11 HOH HOH . 
D 4 HOH A 34 434 33 HOH HOH . 
D 4 HOH A 35 435 20 HOH HOH . 
D 4 HOH A 36 436 48 HOH HOH . 
D 4 HOH A 37 437 27 HOH HOH . 
D 4 HOH A 38 438 18 HOH HOH . 
D 4 HOH A 39 439 34 HOH HOH . 
D 4 HOH A 40 440 51 HOH HOH . 
D 4 HOH A 41 441 35 HOH HOH . 
D 4 HOH A 42 442 14 HOH HOH . 
D 4 HOH A 43 443 53 HOH HOH . 
D 4 HOH A 44 444 50 HOH HOH . 
D 4 HOH A 45 445 55 HOH HOH . 
D 4 HOH A 46 446 42 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UXO . . . C 3 19.818 4.091 7.645 1 45.19 ? N1 UXO 302 A 1 
HETATM 2 C C7 UXO . . . C 3 14.181 9.738 10.536 1 45.89 ? C7 UXO 302 A 1 
HETATM 3 C C8 UXO . . . C 3 12.997 8.898 12.501 1 56.89 ? C8 UXO 302 A 1 
HETATM 4 N N2 UXO . . . C 3 19.374 6.237 8.644 1 47 ? N2 UXO 302 A 1 
HETATM 5 C C9 UXO . . . C 3 12.96 7.381 12.477 1 67.29 ? C9 UXO 302 A 1 
HETATM 6 O O1 UXO . . . C 3 19.002 8.338 12.885 1 47.59 ? O1 UXO 302 A 1 
HETATM 7 C C1 UXO . . . C 3 20.143 5.194 8.324 1 42.27 ? C1 UXO 302 A 1 
HETATM 8 O O5 UXO . . . C 3 15.616 11.498 8.243 1 38.37 ? O5 UXO 302 A 1 
HETATM 9 C C5 UXO . . . C 3 17.099 8.275 8.917 1 52.09 ? C5 UXO 302 A 1 
HETATM 10 C C6 UXO . . . C 3 15.537 9.692 9.859 1 52.74 ? C6 UXO 302 A 1 
HETATM 11 N N3 UXO . . . C 3 16.307 5.18 7.146 1 51.61 ? N3 UXO 302 A 1 
HETATM 12 C C4 UXO . . . C 3 16.024 6.353 7.66 1 51.62 ? C4 UXO 302 A 1 
HETATM 13 O O4 UXO . . . C 3 19.397 9.46 16.255 1 52.21 ? O4 UXO 302 A 1 
HETATM 14 C C3 UXO . . . C 3 17.644 4.996 7.467 1 50.48 ? C3 UXO 302 A 1 
HETATM 15 O O3 UXO . . . C 3 19.384 6.837 15.813 1 58.23 ? O3 UXO 302 A 1 
HETATM 16 C C2 UXO . . . C 3 18.131 6.079 8.18 1 49.53 ? C2 UXO 302 A 1 
HETATM 17 N N4 UXO . . . C 3 17.078 6.955 8.294 1 53.84 ? N4 UXO 302 A 1 
HETATM 18 N N UXO . . . C 3 18.234 2.847 6.516 1 44.24 ? N UXO 302 A 1 
HETATM 19 C C UXO . . . C 3 18.552 3.954 7.193 1 50.72 ? C UXO 302 A 1 
HETATM 20 O O UXO . . . C 3 16.052 8.347 9.87 1 49.08 ? O UXO 302 A 1 
HETATM 21 C C10 UXO . . . C 3 12.445 6.818 11.161 1 76.42 ? C10 UXO 302 A 1 
HETATM 22 C C11 UXO . . . C 3 11.316 5.903 11.333 1 80.57 ? C11 UXO 302 A 1 
HETATM 23 C C12 UXO . . . C 3 10.397 5.19 11.509 1 81.32 ? C12 UXO 302 A 1 
HETATM 24 C C13 UXO . . . C 3 14.64 10.623 12.789 1 49.46 ? C13 UXO 302 A 1 
HETATM 25 C C14 UXO . . . C 3 16.093 10.842 12.856 1 51.36 ? C14 UXO 302 A 1 
HETATM 26 C C15 UXO . . . C 3 17.28 10.954 12.918 1 47.55 ? C15 UXO 302 A 1 
HETATM 27 C C16 UXO . . . C 3 18.636 11.358 12.845 1 39.17 ? C16 UXO 302 A 1 
HETATM 28 C C17 UXO . . . C 3 20.433 12.402 12.366 1 45.47 ? C17 UXO 302 A 1 
HETATM 29 C C18 UXO . . . C 3 20.831 11.208 12.945 1 42.48 ? C18 UXO 302 A 1 
HETATM 30 C C19 UXO . . . C 3 22.962 11.678 12.653 1 40.98 ? C19 UXO 302 A 1 
HETATM 31 C C20 UXO . . . C 3 21.45 13.262 11.912 1 40.53 ? C20 UXO 302 A 1 
HETATM 32 C C21 UXO . . . C 3 19.576 9.205 13.837 1 48.69 ? C21 UXO 302 A 1 
HETATM 33 C C22 UXO . . . C 3 18.476 7.186 13.582 1 57.79 ? C22 UXO 302 A 1 
HETATM 34 C C23 UXO . . . C 3 17.161 6.779 12.959 1 52.97 ? C23 UXO 302 A 1 
HETATM 35 C C24 UXO . . . C 3 18.41 7.561 15.07 1 49.93 ? C24 UXO 302 A 1 
HETATM 36 C C25 UXO . . . C 3 18.699 9.069 15.078 1 49.53 ? C25 UXO 302 A 1 
HETATM 37 C C26 UXO . . . C 3 15.591 10.083 8.391 1 44.56 ? C26 UXO 302 A 1 
HETATM 38 C C27 UXO . . . C 3 16.904 9.438 7.924 1 46.34 ? C27 UXO 302 A 1 
HETATM 39 N N10 UXO . . . C 3 19.667 10.536 13.256 1 41.98 ? N10 UXO 302 A 1 
HETATM 40 N N5 UXO . . . C 3 14.24 9.477 11.98 1 55.28 ? N5 UXO 302 A 1 
HETATM 41 N N6 UXO . . . C 3 19.047 12.497 12.316 1 43.48 ? N6 UXO 302 A 1 
HETATM 42 N N7 UXO . . . C 3 22.087 10.787 13.122 1 39.81 ? N7 UXO 302 A 1 
HETATM 43 N N8 UXO . . . C 3 22.729 12.86 12.076 1 40.37 ? N8 UXO 302 A 1 
HETATM 44 N N9 UXO . . . C 3 21.222 14.44 11.322 1 44.11 ? N9 UXO 302 A 1 
HETATM 45 O O2 UXO . . . C 3 16.179 7.795 13.115 1 54.03 ? O2 UXO 302 A 1 
HETATM 46 O O6 UXO . . . C 3 17.99 10.354 8 1 48.29 ? O6 UXO 302 A 1 
#
_model_server_stats.io_time_ms              115 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           46 
#