data_8QIP # _model_server_result.job_id dqLou0W6m4oU-p4bm9NOdQ _model_server_result.datetime_utc '2024-11-08 13:41:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qip # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 8QIP # _exptl.entry_id 8QIP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8QIP _cell.length_a 121.54 _cell.length_b 121.54 _cell.length_c 46.18 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QIP _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+2/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 30.786667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 62 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 57 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id FMN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id FMN _struct_conn.ptnr2_auth_seq_id 500 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.803 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 8QIP _atom_sites.fract_transf_matrix[1][1] 0.008228 _atom_sites.fract_transf_matrix[1][2] 0.00475 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 500 500 FMN FMN . C 3 HOH A 1 601 21 HOH HOH . C 3 HOH A 2 602 29 HOH HOH . C 3 HOH A 3 603 8 HOH HOH . C 3 HOH A 4 604 24 HOH HOH . C 3 HOH A 5 605 32 HOH HOH . C 3 HOH A 6 606 5 HOH HOH . C 3 HOH A 7 607 43 HOH HOH . C 3 HOH A 8 608 12 HOH HOH . C 3 HOH A 9 609 13 HOH HOH . C 3 HOH A 10 610 7 HOH HOH . C 3 HOH A 11 611 15 HOH HOH . C 3 HOH A 12 612 50 HOH HOH . C 3 HOH A 13 613 9 HOH HOH . C 3 HOH A 14 614 18 HOH HOH . C 3 HOH A 15 615 20 HOH HOH . C 3 HOH A 16 616 2 HOH HOH . C 3 HOH A 17 617 1 HOH HOH . C 3 HOH A 18 618 23 HOH HOH . C 3 HOH A 19 619 31 HOH HOH . C 3 HOH A 20 620 35 HOH HOH . C 3 HOH A 21 621 4 HOH HOH . C 3 HOH A 22 622 45 HOH HOH . C 3 HOH A 23 623 14 HOH HOH . C 3 HOH A 24 624 26 HOH HOH . C 3 HOH A 25 625 16 HOH HOH . C 3 HOH A 26 626 46 HOH HOH . C 3 HOH A 27 627 6 HOH HOH . C 3 HOH A 28 628 34 HOH HOH . C 3 HOH A 29 629 3 HOH HOH . C 3 HOH A 30 630 40 HOH HOH . C 3 HOH A 31 631 42 HOH HOH . C 3 HOH A 32 632 38 HOH HOH . C 3 HOH A 33 633 39 HOH HOH . C 3 HOH A 34 634 28 HOH HOH . C 3 HOH A 35 635 33 HOH HOH . C 3 HOH A 36 636 10 HOH HOH . C 3 HOH A 37 637 22 HOH HOH . C 3 HOH A 38 638 36 HOH HOH . C 3 HOH A 39 639 11 HOH HOH . C 3 HOH A 40 640 17 HOH HOH . C 3 HOH A 41 641 19 HOH HOH . C 3 HOH A 42 642 55 HOH HOH . C 3 HOH A 43 643 63 HOH HOH . C 3 HOH A 44 644 41 HOH HOH . C 3 HOH A 45 645 53 HOH HOH . C 3 HOH A 46 646 51 HOH HOH . C 3 HOH A 47 647 49 HOH HOH . C 3 HOH A 48 648 30 HOH HOH . C 3 HOH A 49 649 52 HOH HOH . C 3 HOH A 50 650 37 HOH HOH . C 3 HOH A 51 651 54 HOH HOH . C 3 HOH A 52 652 27 HOH HOH . C 3 HOH A 53 653 57 HOH HOH . C 3 HOH A 54 654 48 HOH HOH . C 3 HOH A 55 655 60 HOH HOH . C 3 HOH A 56 656 47 HOH HOH . C 3 HOH A 57 657 62 HOH HOH . C 3 HOH A 58 658 25 HOH HOH . C 3 HOH A 59 659 61 HOH HOH . C 3 HOH A 60 660 58 HOH HOH . C 3 HOH A 61 661 59 HOH HOH . C 3 HOH A 62 662 56 HOH HOH . C 3 HOH A 63 663 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 12.211 52.635 16.884 1 12.96 ? N1 FMN 500 A 1 HETATM 2 C C2 FMN . . . B 2 11.877 53.471 15.84 1 23.33 ? C2 FMN 500 A 1 HETATM 3 O O2 FMN . . . B 2 10.845 54.132 15.885 1 26.5 ? O2 FMN 500 A 1 HETATM 4 N N3 FMN . . . B 2 12.691 53.529 14.731 1 12.79 ? N3 FMN 500 A 1 HETATM 5 C C4 FMN . . . B 2 13.818 52.732 14.669 1 22.02 ? C4 FMN 500 A 1 HETATM 6 O O4 FMN . . . B 2 14.565 52.836 13.698 1 31.39 ? O4 FMN 500 A 1 HETATM 7 C C4A FMN . . . B 2 14.31 52.176 15.822 1 23.08 ? C4A FMN 500 A 1 HETATM 8 N N5 FMN . . . B 2 15.251 51.207 15.642 1 15.28 ? N5 FMN 500 A 1 HETATM 9 C C5A FMN . . . B 2 15.648 50.402 16.691 1 18.71 ? C5A FMN 500 A 1 HETATM 10 C C6 FMN . . . B 2 16.818 49.648 16.614 1 33.26 ? C6 FMN 500 A 1 HETATM 11 C C7 FMN . . . B 2 17.179 48.809 17.664 1 34.31 ? C7 FMN 500 A 1 HETATM 12 C C7M FMN . . . B 2 18.438 47.993 17.591 1 17.75 ? C7M FMN 500 A 1 HETATM 13 C C8 FMN . . . B 2 16.366 48.724 18.79 1 21.1 ? C8 FMN 500 A 1 HETATM 14 C C8M FMN . . . B 2 16.742 47.826 19.927 1 28.05 ? C8M FMN 500 A 1 HETATM 15 C C9 FMN . . . B 2 15.201 49.476 18.862 1 29.53 ? C9 FMN 500 A 1 HETATM 16 C C9A FMN . . . B 2 14.84 50.316 17.814 1 27.37 ? C9A FMN 500 A 1 HETATM 17 N N10 FMN . . . B 2 13.691 51.082 17.862 1 19.56 ? N10 FMN 500 A 1 HETATM 18 C C10 FMN . . . B 2 13.353 51.868 16.778 1 27.3 ? C10 FMN 500 A 1 HETATM 19 C C1' FMN . . . B 2 12.758 51.021 19.038 1 20.84 ? C1' FMN 500 A 1 HETATM 20 C C2' FMN . . . B 2 13.038 51.91 20.241 1 36.24 ? C2' FMN 500 A 1 HETATM 21 O O2' FMN . . . B 2 14.396 51.852 20.599 1 43.15 ? O2' FMN 500 A 1 HETATM 22 C C3' FMN . . . B 2 12.189 51.393 21.399 1 24.61 ? C3' FMN 500 A 1 HETATM 23 O O3' FMN . . . B 2 12.662 50.125 21.789 1 21.36 ? O3' FMN 500 A 1 HETATM 24 C C4' FMN . . . B 2 10.718 51.284 21 1 23.23 ? C4' FMN 500 A 1 HETATM 25 O O4' FMN . . . B 2 10.163 52.578 20.928 1 35.78 ? O4' FMN 500 A 1 HETATM 26 C C5' FMN . . . B 2 9.89 50.449 21.976 1 29.51 ? C5' FMN 500 A 1 HETATM 27 O O5' FMN . . . B 2 10.298 50.694 23.304 1 41.83 ? O5' FMN 500 A 1 HETATM 28 P P FMN . . . B 2 9.473 51.718 24.231 0.4 21.91 ? P FMN 500 A 1 HETATM 29 O O1P FMN . . . B 2 9.655 53.107 23.669 0.53 15.72 ? O1P FMN 500 A 1 HETATM 30 O O2P FMN . . . B 2 9.992 51.667 25.647 0.66 20.7 ? O2P FMN 500 A 1 HETATM 31 O O3P FMN . . . B 2 8.01 51.353 24.214 0.88 31.58 ? O3P FMN 500 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #