data_8QJ7
#
_model_server_result.job_id            a9gHU4-DIQbuRc-mTR2Bmg 
_model_server_result.datetime_utc      '2024-12-27 09:41:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8qj7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":504}' 
#
_entry.id    8QJ7 
#
_exptl.entry_id    8QJ7 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8QJ7 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8QJ7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 109 C ASP 109 1_555 F MN MN . C MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? 
metalc ? metalc2 A SG CYS 121 C CYS 121 1_555 E ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc3 A SG CYS 122 C CYS 122 1_555 E ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc4 A SG CYS 128 C CYS 128 1_555 E ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc5 A SG CYS 131 C CYS 131 1_555 E ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc6 F MN MN . C MN 502 1_555 H O3A ATP . C ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc7 F MN MN . C MN 502 1_555 H O3' ATP . C ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc8 F MN MN . C MN 502 1_555 H PB ATP . C ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc9 F MN MN . C MN 502 1_555 H O1B ATP . C ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc10 G MN MN . C MN 503 1_555 H O5' ATP . C ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc11 B SG CYS 1283 A CYS 1283 1_555 I ZN ZN . A ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc12 B SG CYS 1286 A CYS 1286 1_555 I ZN ZN . A ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc13 B SG CYS 1310 A CYS 1310 1_555 I ZN ZN . A ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc14 B SG CYS 1315 A CYS 1315 1_555 I ZN ZN . A ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc15 B SG CYS 1348 A CYS 1348 1_555 J ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc16 B SG CYS 1353 A CYS 1353 1_555 J ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc17 B SG CYS 1371 A CYS 1371 1_555 J ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc18 B SG CYS 1374 A CYS 1374 1_555 J ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc19 D SG CYS 287 D CYS 287 1_555 K FE4 SF4 . D SF4 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc20 D SG CYS 367 D CYS 367 1_555 K FE1 SF4 . D SF4 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc21 D SG CYS 384 D CYS 384 1_555 K FE2 SF4 . D SF4 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc22 D SG CYS 424 D CYS 424 1_555 K FE3 SF4 . D SF4 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     8QJ7 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 ZN C 1 501 501 ZN ZN . 
F 6 MN C 1 502 502 MN MN . 
G 6 MN C 1 503 503 MN MN . 
H 7 ATP C 1 504 504 ATP ATP . 
I 5 ZN A 1 1501 1501 ZN ZN . 
J 5 ZN A 1 1502 1502 ZN ZN . 
K 8 SF4 D 1 601 601 SF4 SF4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . H 7 206.856 203.59 257.618 1 258.49 ? PG ATP 504 C 1 
HETATM 2 O O1G ATP . . . H 7 205.782 204.125 258.531 1 252.28 ? O1G ATP 504 C 1 
HETATM 3 O O2G ATP . . . H 7 207.895 202.837 258.418 1 250.46 ? O2G ATP 504 C 1 
HETATM 4 O O3G ATP . . . H 7 207.507 204.731 256.878 1 247.47 ? O3G ATP 504 C 1 
HETATM 5 P PB ATP . . . H 7 206.927 201.794 255.325 1 251.65 ? PB ATP 504 C 1 
HETATM 6 O O1B ATP . . . H 7 208.083 202.639 254.842 1 239.39 ? O1B ATP 504 C 1 
HETATM 7 O O2B ATP . . . H 7 207.403 200.435 255.782 1 245.28 ? O2B ATP 504 C 1 
HETATM 8 O O3B ATP . . . H 7 206.135 202.578 256.537 1 252.55 ? O3B ATP 504 C 1 
HETATM 9 P PA ATP . . . H 7 204.327 202.34 254.232 1 255.1 ? PA ATP 504 C 1 
HETATM 10 O O1A ATP . . . H 7 204.477 203.791 254.62 1 250.77 ? O1A ATP 504 C 1 
HETATM 11 O O2A ATP . . . H 7 203.5 201.617 255.268 1 247.11 ? O2A ATP 504 C 1 
HETATM 12 O O3A ATP . . . H 7 205.829 201.653 254.104 1 245.76 ? O3A ATP 504 C 1 
HETATM 13 O O5' ATP . . . H 7 203.618 202.249 252.739 1 243.32 ? O5' ATP 504 C 1 
HETATM 14 C C5' ATP . . . H 7 204.281 201.457 251.783 1 237 ? C5' ATP 504 C 1 
HETATM 15 C C4' ATP . . . H 7 205.412 202.172 251.102 1 237.54 ? C4' ATP 504 C 1 
HETATM 16 O O4' ATP . . . H 7 205.029 202.456 249.887 1 236.26 ? O4' ATP 504 C 1 
HETATM 17 C C3' ATP . . . H 7 205.832 203.619 251.827 1 238.92 ? C3' ATP 504 C 1 
HETATM 18 O O3' ATP . . . H 7 206.903 203.408 252.821 1 235.47 ? O3' ATP 504 C 1 
HETATM 19 C C2' ATP . . . H 7 206.246 204.344 250.916 1 236.74 ? C2' ATP 504 C 1 
HETATM 20 O O2' ATP . . . H 7 207.709 204.097 250.682 1 228.51 ? O2' ATP 504 C 1 
HETATM 21 C C1' ATP . . . H 7 205.392 203.899 249.632 1 236.89 ? C1' ATP 504 C 1 
HETATM 22 N N9 ATP . . . H 7 204.302 204.638 249.509 1 240.99 ? N9 ATP 504 C 1 
HETATM 23 C C8 ATP . . . H 7 203.233 204.292 250.234 1 240.65 ? C8 ATP 504 C 1 
HETATM 24 N N7 ATP . . . H 7 202.25 205.156 249.967 1 242.32 ? N7 ATP 504 C 1 
HETATM 25 C C5 ATP . . . H 7 202.71 206.037 249.07 1 245.14 ? C5 ATP 504 C 1 
HETATM 26 C C6 ATP . . . H 7 202.123 207.12 248.457 1 243.51 ? C6 ATP 504 C 1 
HETATM 27 N N6 ATP . . . H 7 200.782 207.665 248.594 1 241.03 ? N6 ATP 504 C 1 
HETATM 28 N N1 ATP . . . H 7 202.808 207.845 247.589 1 241.88 ? N1 ATP 504 C 1 
HETATM 29 C C2 ATP . . . H 7 204.091 207.52 247.303 1 238.07 ? C2 ATP 504 C 1 
HETATM 30 N N3 ATP . . . H 7 204.671 206.456 247.903 1 237.74 ? N3 ATP 504 C 1 
HETATM 31 C C4 ATP . . . H 7 203.975 205.718 248.786 1 243.46 ? C4 ATP 504 C 1 
HETATM 32 H "H5'1" ATP . . . H 7 203.64 201.175 251.112 1 232.76 ? "H5'1" ATP 504 C 1 
HETATM 33 H "H5'2" ATP . . . H 7 204.63 200.673 252.231 1 234.62 ? "H5'2" ATP 504 C 1 
HETATM 34 H H4' ATP . . . H 7 206.19 201.594 251.066 1 232.81 ? H4' ATP 504 C 1 
HETATM 35 H H3' ATP . . . H 7 205.061 204.034 252.242 1 240.93 ? H3' ATP 504 C 1 
HETATM 36 H HO3' ATP . . . H 7 207.61 203.148 252.427 1 234.45 ? HO3' ATP 504 C 1 
HETATM 37 H H2' ATP . . . H 7 206.082 205.277 251.125 1 237.59 ? H2' ATP 504 C 1 
HETATM 38 H HO2' ATP . . . H 7 208.053 204.771 250.295 1 225.48 ? HO2' ATP 504 C 1 
HETATM 39 H H1' ATP . . . H 7 205.938 203.966 248.834 1 231.12 ? H1' ATP 504 C 1 
HETATM 40 H H8 ATP . . . H 7 203.184 203.578 250.826 1 239.49 ? H8 ATP 504 C 1 
HETATM 41 H HN61 ATP . . . H 7 200.439 208.129 247.956 1 242.22 ? HN61 ATP 504 C 1 
HETATM 42 H HN62 ATP . . . H 7 200.332 207.524 249.313 1 241.74 ? HN62 ATP 504 C 1 
HETATM 43 H H2 ATP . . . H 7 204.574 208.029 246.692 1 239 ? H2 ATP 504 C 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    126 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           43 
#