data_8QK0 # _model_server_result.job_id 8farjf7BH_dCSZB2QNfhcw _model_server_result.datetime_utc '2024-11-07 05:30:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qk0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 8QK0 # _exptl.entry_id 8QK0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.3 _cell.angle_gamma 90 _cell.entry_id 8QK0 _cell.length_a 75.564 _cell.length_b 55.033 _cell.length_c 37.456 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QK0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 36 A CYS 15 1_555 C CAB HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale2 A SG CYS 39 A CYS 18 1_555 C CAC HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? covale ? covale3 B SG CYS 36 C CYS 15 1_555 F CAB HEC . C HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale4 B SG CYS 39 C CYS 18 1_555 F CAC HEC . C HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? metalc ? metalc1 A O SER 34 A SER 13 1_555 H NA NA . C NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc2 A O ALA 37 A ALA 16 1_555 D NA NA . A NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc3 A NE2 HIS 40 A HIS 19 1_555 C FE HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc4 A O HIS 40 A HIS 19 1_555 D NA NA . A NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc5 A OD1 ASP 46 A ASP 25 1_555 D NA NA . A NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc6 A OD2 ASP 46 A ASP 25 1_555 D NA NA . A NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc7 A O SER 48 A SER 27 1_555 D NA NA . A NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc8 A O ASP 62 A ASP 41 1_555 E NA NA . A NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc9 A O PHE 65 A PHE 44 1_555 E NA NA . A NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc10 A NE2 HIS 72 A HIS 51 1_555 C FE HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc11 E NA NA . A NA 103 1_555 J O HOH . A HOH 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc12 E NA NA . A NA 103 1_555 J O HOH . A HOH 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc13 E NA NA . A NA 103 1_555 J O HOH . A HOH 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc14 E NA NA . A NA 103 1_554 B O SER 34 C SER 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc15 J O HOH . A HOH 246 1_555 H NA NA . C NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc16 B O ALA 37 C ALA 16 1_555 G NA NA . C NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc17 B NE2 HIS 40 C HIS 19 1_555 F FE HEC . C HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc18 B O HIS 40 C HIS 19 1_555 G NA NA . C NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc19 B OD1 ASP 46 C ASP 25 1_555 G NA NA . C NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc20 B OD2 ASP 46 C ASP 25 1_555 G NA NA . C NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc21 B O SER 48 C SER 27 1_555 G NA NA . C NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc22 B O ASP 62 C ASP 41 1_555 H NA NA . C NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc23 B O PHE 65 C PHE 44 1_555 H NA NA . C NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc24 B NE2 HIS 72 C HIS 51 1_555 F FE HEC . C HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc25 G NA NA . C NA 102 1_555 K O HOH . C HOH 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc26 H NA NA . C NA 103 1_555 K O HOH . C HOH 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8QK0 _atom_sites.fract_transf_matrix[1][1] 0.013234 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002167 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 101 5 HEC HEC . D 3 NA A 1 102 1 NA NA . E 3 NA A 1 103 3 NA NA . F 2 HEC C 1 101 5 HEC HEC . G 3 NA C 1 102 2 NA NA . H 3 NA C 1 103 4 NA NA . I 4 GOL C 1 104 1 GOL GOL . J 5 HOH A 1 201 119 HOH HOH . J 5 HOH A 2 202 135 HOH HOH . J 5 HOH A 3 203 140 HOH HOH . J 5 HOH A 4 204 56 HOH HOH . J 5 HOH A 5 205 137 HOH HOH . J 5 HOH A 6 206 88 HOH HOH . J 5 HOH A 7 207 174 HOH HOH . J 5 HOH A 8 208 24 HOH HOH . J 5 HOH A 9 209 118 HOH HOH . J 5 HOH A 10 210 19 HOH HOH . J 5 HOH A 11 211 103 HOH HOH . J 5 HOH A 12 212 68 HOH HOH . J 5 HOH A 13 213 91 HOH HOH . J 5 HOH A 14 214 109 HOH HOH . J 5 HOH A 15 215 4 HOH HOH . J 5 HOH A 16 216 22 HOH HOH . J 5 HOH A 17 217 64 HOH HOH . J 5 HOH A 18 218 154 HOH HOH . J 5 HOH A 19 219 8 HOH HOH . J 5 HOH A 20 220 156 HOH HOH . J 5 HOH A 21 221 10 HOH HOH . J 5 HOH A 22 222 110 HOH HOH . J 5 HOH A 23 223 95 HOH HOH . J 5 HOH A 24 224 169 HOH HOH . J 5 HOH A 25 225 31 HOH HOH . J 5 HOH A 26 226 161 HOH HOH . J 5 HOH A 27 227 12 HOH HOH . J 5 HOH A 28 228 16 HOH HOH . J 5 HOH A 29 229 40 HOH HOH . J 5 HOH A 30 230 25 HOH HOH . J 5 HOH A 31 231 21 HOH HOH . J 5 HOH A 32 232 177 HOH HOH . J 5 HOH A 33 233 1 HOH HOH . J 5 HOH A 34 234 77 HOH HOH . J 5 HOH A 35 235 15 HOH HOH . J 5 HOH A 36 236 97 HOH HOH . J 5 HOH A 37 237 65 HOH HOH . J 5 HOH A 38 238 150 HOH HOH . J 5 HOH A 39 239 30 HOH HOH . J 5 HOH A 40 240 3 HOH HOH . J 5 HOH A 41 241 79 HOH HOH . J 5 HOH A 42 242 127 HOH HOH . J 5 HOH A 43 243 114 HOH HOH . J 5 HOH A 44 244 89 HOH HOH . J 5 HOH A 45 245 155 HOH HOH . J 5 HOH A 46 246 136 HOH HOH . J 5 HOH A 47 247 125 HOH HOH . J 5 HOH A 48 248 83 HOH HOH . J 5 HOH A 49 249 35 HOH HOH . J 5 HOH A 50 250 153 HOH HOH . J 5 HOH A 51 251 26 HOH HOH . J 5 HOH A 52 252 33 HOH HOH . J 5 HOH A 53 253 165 HOH HOH . J 5 HOH A 54 254 66 HOH HOH . J 5 HOH A 55 255 45 HOH HOH . J 5 HOH A 56 256 149 HOH HOH . J 5 HOH A 57 257 70 HOH HOH . J 5 HOH A 58 258 81 HOH HOH . J 5 HOH A 59 259 123 HOH HOH . J 5 HOH A 60 260 71 HOH HOH . J 5 HOH A 61 261 38 HOH HOH . J 5 HOH A 62 262 7 HOH HOH . J 5 HOH A 63 263 50 HOH HOH . J 5 HOH A 64 264 143 HOH HOH . J 5 HOH A 65 265 49 HOH HOH . J 5 HOH A 66 266 117 HOH HOH . J 5 HOH A 67 267 130 HOH HOH . J 5 HOH A 68 268 131 HOH HOH . J 5 HOH A 69 269 115 HOH HOH . J 5 HOH A 70 270 100 HOH HOH . J 5 HOH A 71 271 178 HOH HOH . J 5 HOH A 72 272 133 HOH HOH . J 5 HOH A 73 273 167 HOH HOH . J 5 HOH A 74 274 152 HOH HOH . J 5 HOH A 75 275 29 HOH HOH . J 5 HOH A 76 276 151 HOH HOH . J 5 HOH A 77 277 61 HOH HOH . J 5 HOH A 78 278 46 HOH HOH . J 5 HOH A 79 279 141 HOH HOH . J 5 HOH A 80 280 62 HOH HOH . J 5 HOH A 81 281 126 HOH HOH . J 5 HOH A 82 282 73 HOH HOH . J 5 HOH A 83 283 129 HOH HOH . J 5 HOH A 84 284 158 HOH HOH . J 5 HOH A 85 285 87 HOH HOH . J 5 HOH A 86 286 145 HOH HOH . J 5 HOH A 87 287 170 HOH HOH . J 5 HOH A 88 288 122 HOH HOH . J 5 HOH A 89 289 47 HOH HOH . K 5 HOH C 1 201 176 HOH HOH . K 5 HOH C 2 202 168 HOH HOH . K 5 HOH C 3 203 172 HOH HOH . K 5 HOH C 4 204 20 HOH HOH . K 5 HOH C 5 205 11 HOH HOH . K 5 HOH C 6 206 107 HOH HOH . K 5 HOH C 7 207 72 HOH HOH . K 5 HOH C 8 208 42 HOH HOH . K 5 HOH C 9 209 78 HOH HOH . K 5 HOH C 10 210 173 HOH HOH . K 5 HOH C 11 211 17 HOH HOH . K 5 HOH C 12 212 44 HOH HOH . K 5 HOH C 13 213 23 HOH HOH . K 5 HOH C 14 214 147 HOH HOH . K 5 HOH C 15 215 5 HOH HOH . K 5 HOH C 16 216 146 HOH HOH . K 5 HOH C 17 217 18 HOH HOH . K 5 HOH C 18 218 99 HOH HOH . K 5 HOH C 19 219 55 HOH HOH . K 5 HOH C 20 220 2 HOH HOH . K 5 HOH C 21 221 59 HOH HOH . K 5 HOH C 22 222 32 HOH HOH . K 5 HOH C 23 223 98 HOH HOH . K 5 HOH C 24 224 148 HOH HOH . K 5 HOH C 25 225 27 HOH HOH . K 5 HOH C 26 226 48 HOH HOH . K 5 HOH C 27 227 84 HOH HOH . K 5 HOH C 28 228 6 HOH HOH . K 5 HOH C 29 229 36 HOH HOH . K 5 HOH C 30 230 28 HOH HOH . K 5 HOH C 31 231 63 HOH HOH . K 5 HOH C 32 232 116 HOH HOH . K 5 HOH C 33 233 9 HOH HOH . K 5 HOH C 34 234 160 HOH HOH . K 5 HOH C 35 235 113 HOH HOH . K 5 HOH C 36 236 53 HOH HOH . K 5 HOH C 37 237 34 HOH HOH . K 5 HOH C 38 238 139 HOH HOH . K 5 HOH C 39 239 142 HOH HOH . K 5 HOH C 40 240 124 HOH HOH . K 5 HOH C 41 241 90 HOH HOH . K 5 HOH C 42 242 54 HOH HOH . K 5 HOH C 43 243 43 HOH HOH . K 5 HOH C 44 244 60 HOH HOH . K 5 HOH C 45 245 39 HOH HOH . K 5 HOH C 46 246 132 HOH HOH . K 5 HOH C 47 247 128 HOH HOH . K 5 HOH C 48 248 82 HOH HOH . K 5 HOH C 49 249 92 HOH HOH . K 5 HOH C 50 250 121 HOH HOH . K 5 HOH C 51 251 175 HOH HOH . K 5 HOH C 52 252 96 HOH HOH . K 5 HOH C 53 253 58 HOH HOH . K 5 HOH C 54 254 144 HOH HOH . K 5 HOH C 55 255 166 HOH HOH . K 5 HOH C 56 256 179 HOH HOH . K 5 HOH C 57 257 86 HOH HOH . K 5 HOH C 58 258 75 HOH HOH . K 5 HOH C 59 259 163 HOH HOH . K 5 HOH C 60 260 37 HOH HOH . K 5 HOH C 61 261 94 HOH HOH . K 5 HOH C 62 262 67 HOH HOH . K 5 HOH C 63 263 171 HOH HOH . K 5 HOH C 64 264 162 HOH HOH . K 5 HOH C 65 265 111 HOH HOH . K 5 HOH C 66 266 106 HOH HOH . K 5 HOH C 67 267 51 HOH HOH . K 5 HOH C 68 268 41 HOH HOH . K 5 HOH C 69 269 13 HOH HOH . K 5 HOH C 70 270 69 HOH HOH . K 5 HOH C 71 271 102 HOH HOH . K 5 HOH C 72 272 157 HOH HOH . K 5 HOH C 73 273 104 HOH HOH . K 5 HOH C 74 274 112 HOH HOH . K 5 HOH C 75 275 164 HOH HOH . K 5 HOH C 76 276 14 HOH HOH . K 5 HOH C 77 277 108 HOH HOH . K 5 HOH C 78 278 120 HOH HOH . K 5 HOH C 79 279 76 HOH HOH . K 5 HOH C 80 280 52 HOH HOH . K 5 HOH C 81 281 93 HOH HOH . K 5 HOH C 82 282 57 HOH HOH . K 5 HOH C 83 283 134 HOH HOH . K 5 HOH C 84 284 138 HOH HOH . K 5 HOH C 85 285 80 HOH HOH . K 5 HOH C 86 286 105 HOH HOH . K 5 HOH C 87 287 101 HOH HOH . K 5 HOH C 88 288 159 HOH HOH . K 5 HOH C 89 289 85 HOH HOH . K 5 HOH C 90 290 74 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 6.394 _atom_site.Cartn_y 4.122 _atom_site.Cartn_z 9.636 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #