data_8QK2 # _model_server_result.job_id bC5C-YkoyJ6H5ZFqpNIjlw _model_server_result.datetime_utc '2024-11-28 03:57:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qk2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 8QK2 # _exptl.entry_id 8QK2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 569.656 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[4-[4-(4-cyano-6-methyl-pyrimidin-2-yl)piperazin-1-yl]sulfonylphenyl]-2-[methyl(methylsulfonyl)amino]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8QK2 _cell.length_a 60.204 _cell.length_b 60.204 _cell.length_c 286.779 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QK2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -30.102 52.138193 47.7965 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 8 A ASP 8 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc2 A NE2 HIS 10 A HIS 10 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc3 A OD2 ASP 41 A ASP 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc4 A OD2 ASP 41 A ASP 41 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc5 A OD1 ASN 79 A ASN 79 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc6 A NE2 HIS 114 A HIS 114 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc7 A ND1 HIS 195 A HIS 195 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc8 A NE2 HIS 197 A HIS 197 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc9 B MN MN . A MN 301 1_555 E O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc10 C MN MN . A MN 302 1_555 E O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? # _chem_comp.formula 'C25 H27 N7 O5 S2' _chem_comp.formula_weight 569.656 _chem_comp.id VTF _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[4-[4-(4-cyano-6-methyl-pyrimidin-2-yl)piperazin-1-yl]sulfonylphenyl]-2-[methyl(methylsulfonyl)amino]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N39 C38 VTF trip 376 n n C10 C11 VTF sing 377 n n C10 N7 VTF sing 378 n n C38 C1 VTF sing 379 n n O16 S13 VTF doub 380 n n C11 N12 VTF sing 381 n n N2 C1 VTF doub 382 n y N2 C3 VTF sing 383 n y N12 S13 VTF sing 384 n n N12 C9 VTF sing 385 n n C1 C6 VTF sing 386 n y N7 C3 VTF sing 387 n n N7 C8 VTF sing 388 n n C3 N4 VTF doub 389 n y C8 C9 VTF sing 390 n n S13 O15 VTF doub 391 n n S13 C14 VTF sing 392 n n C6 C5 VTF doub 393 n y N4 C5 VTF sing 394 n y C5 C37 VTF sing 395 n n C17 C14 VTF doub 396 n y C17 C18 VTF sing 397 n y C14 C20 VTF sing 398 n y C18 C19 VTF doub 399 n y C20 C21 VTF doub 400 n y C19 C21 VTF sing 401 n y C19 N22 VTF sing 402 n n N22 C23 VTF sing 403 n n O36 S33 VTF doub 404 n n C23 O24 VTF doub 405 n n C23 C25 VTF sing 406 n n O35 S33 VTF doub 407 n n C26 C25 VTF doub 408 n y C26 C27 VTF sing 409 n y S33 C34 VTF sing 410 n n S33 N31 VTF sing 411 n n C25 C30 VTF sing 412 n y C27 C28 VTF doub 413 n y C30 N31 VTF sing 414 n n C30 C29 VTF doub 415 n y N31 C32 VTF sing 416 n n C28 C29 VTF sing 417 n y C6 H1 VTF sing 418 n n C8 H2 VTF sing 419 n n C8 H3 VTF sing 420 n n C9 H4 VTF sing 421 n n C9 H5 VTF sing 422 n n C10 H6 VTF sing 423 n n C10 H7 VTF sing 424 n n C11 H8 VTF sing 425 n n C11 H9 VTF sing 426 n n C17 H10 VTF sing 427 n n C18 H11 VTF sing 428 n n C20 H12 VTF sing 429 n n C21 H13 VTF sing 430 n n N22 H14 VTF sing 431 n n C26 H15 VTF sing 432 n n C27 H16 VTF sing 433 n n C28 H17 VTF sing 434 n n C29 H18 VTF sing 435 n n C32 H19 VTF sing 436 n n C32 H20 VTF sing 437 n n C32 H21 VTF sing 438 n n C34 H22 VTF sing 439 n n C34 H23 VTF sing 440 n n C34 H24 VTF sing 441 n n C37 H25 VTF sing 442 n n C37 H26 VTF sing 443 n n C37 H27 VTF sing 444 n n # _atom_sites.entry_id 8QK2 _atom_sites.fract_transf_matrix[1][1] 0.01661 _atom_sites.fract_transf_matrix[1][2] 0.00959 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01918 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003487 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 301 MN MN . C 2 MN A 1 302 302 MN MN . D 3 VTF A 1 303 401 VTF L24 . E 4 HOH A 1 401 35 HOH HOH . E 4 HOH A 2 402 49 HOH HOH . E 4 HOH A 3 403 3 HOH HOH . E 4 HOH A 4 404 36 HOH HOH . E 4 HOH A 5 405 16 HOH HOH . E 4 HOH A 6 406 47 HOH HOH . E 4 HOH A 7 407 48 HOH HOH . E 4 HOH A 8 408 25 HOH HOH . E 4 HOH A 9 409 8 HOH HOH . E 4 HOH A 10 410 12 HOH HOH . E 4 HOH A 11 411 1 HOH HOH . E 4 HOH A 12 412 17 HOH HOH . E 4 HOH A 13 413 4 HOH HOH . E 4 HOH A 14 414 19 HOH HOH . E 4 HOH A 15 415 45 HOH HOH . E 4 HOH A 16 416 53 HOH HOH . E 4 HOH A 17 417 55 HOH HOH . E 4 HOH A 18 418 51 HOH HOH . E 4 HOH A 19 419 54 HOH HOH . E 4 HOH A 20 420 21 HOH HOH . E 4 HOH A 21 421 33 HOH HOH . E 4 HOH A 22 422 30 HOH HOH . E 4 HOH A 23 423 9 HOH HOH . E 4 HOH A 24 424 13 HOH HOH . E 4 HOH A 25 425 37 HOH HOH . E 4 HOH A 26 426 57 HOH HOH . E 4 HOH A 27 427 15 HOH HOH . E 4 HOH A 28 428 42 HOH HOH . E 4 HOH A 29 429 14 HOH HOH . E 4 HOH A 30 430 1 HOH HOH . E 4 HOH A 31 431 7 HOH HOH . E 4 HOH A 32 432 20 HOH HOH . E 4 HOH A 33 433 27 HOH HOH . E 4 HOH A 34 434 39 HOH HOH . E 4 HOH A 35 435 24 HOH HOH . E 4 HOH A 36 436 43 HOH HOH . E 4 HOH A 37 437 26 HOH HOH . E 4 HOH A 38 438 29 HOH HOH . E 4 HOH A 39 439 2 HOH HOH . E 4 HOH A 40 440 5 HOH HOH . E 4 HOH A 41 441 10 HOH HOH . E 4 HOH A 42 442 41 HOH HOH . E 4 HOH A 43 443 32 HOH HOH . E 4 HOH A 44 444 23 HOH HOH . E 4 HOH A 45 445 58 HOH HOH . E 4 HOH A 46 446 34 HOH HOH . E 4 HOH A 47 447 6 HOH HOH . E 4 HOH A 48 448 46 HOH HOH . E 4 HOH A 49 449 56 HOH HOH . E 4 HOH A 50 450 40 HOH HOH . E 4 HOH A 51 451 22 HOH HOH . E 4 HOH A 52 452 11 HOH HOH . E 4 HOH A 53 453 50 HOH HOH . E 4 HOH A 54 454 28 HOH HOH . E 4 HOH A 55 455 18 HOH HOH . E 4 HOH A 56 456 52 HOH HOH . E 4 HOH A 57 457 38 HOH HOH . E 4 HOH A 58 458 31 HOH HOH . E 4 HOH A 59 459 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 VTF . . . D 3 5.657 7.765 5.536 1 38.78 ? C5 VTF 303 A 1 HETATM 2 C C6 VTF . . . D 3 4.81 6.817 5.011 1 39.15 ? C6 VTF 303 A 1 HETATM 3 N N7 VTF . . . D 3 3.996 10.816 4.59 1 37.89 ? N7 VTF 303 A 1 HETATM 4 C C8 VTF . . . D 3 5.148 11.677 4.673 1 39.7 ? C8 VTF 303 A 1 HETATM 5 C C9 VTF . . . D 3 4.647 13.008 5.225 1 36.54 ? C9 VTF 303 A 1 HETATM 6 C C10 VTF . . . D 3 3.123 11.222 3.528 1 36.58 ? C10 VTF 303 A 1 HETATM 7 C C11 VTF . . . D 3 2.51 12.581 3.959 1 36.58 ? C11 VTF 303 A 1 HETATM 8 C C1 VTF . . . D 3 3.664 7.238 4.335 1 45.45 ? C1 VTF 303 A 1 HETATM 9 N N2 VTF . . . D 3 3.418 8.551 4.179 1 39.96 ? N2 VTF 303 A 1 HETATM 10 C C3 VTF . . . D 3 4.313 9.459 4.62 1 39.07 ? C3 VTF 303 A 1 HETATM 11 N N4 VTF . . . D 3 5.384 9.068 5.348 1 37.38 ? N4 VTF 303 A 1 HETATM 12 N N12 VTF . . . D 3 3.623 13.574 4.304 1 35.83 ? N12 VTF 303 A 1 HETATM 13 S S13 VTF . . . D 3 3.01 15.003 4.907 1 35.61 ? S13 VTF 303 A 1 HETATM 14 C C14 VTF . . . D 3 2.025 14.705 6.343 1 34.99 ? C14 VTF 303 A 1 HETATM 15 O O15 VTF . . . D 3 4.122 15.872 5.215 1 38.34 ? O15 VTF 303 A 1 HETATM 16 O O16 VTF . . . D 3 2.206 15.574 3.903 1 37.67 ? O16 VTF 303 A 1 HETATM 17 C C17 VTF . . . D 3 0.719 14.341 6.174 1 35.93 ? C17 VTF 303 A 1 HETATM 18 C C18 VTF . . . D 3 -0.077 14.068 7.259 1 36.09 ? C18 VTF 303 A 1 HETATM 19 C C19 VTF . . . D 3 0.4 14.188 8.556 1 35.19 ? C19 VTF 303 A 1 HETATM 20 C C20 VTF . . . D 3 2.558 14.832 7.658 1 35.03 ? C20 VTF 303 A 1 HETATM 21 C C21 VTF . . . D 3 1.732 14.555 8.774 1 33.02 ? C21 VTF 303 A 1 HETATM 22 N N22 VTF . . . D 3 -0.47 13.832 9.604 1 37.15 ? N22 VTF 303 A 1 HETATM 23 C C23 VTF . . . D 3 -0.3 14.148 10.927 1 39.27 ? C23 VTF 303 A 1 HETATM 24 O O24 VTF . . . D 3 0.649 14.824 11.313 1 40.86 ? O24 VTF 303 A 1 HETATM 25 C C25 VTF . . . D 3 -1.358 13.665 11.906 1 38.96 ? C25 VTF 303 A 1 HETATM 26 C C26 VTF . . . D 3 -1.813 12.349 11.824 1 37.83 ? C26 VTF 303 A 1 HETATM 27 C C27 VTF . . . D 3 -2.797 11.897 12.686 1 36.89 ? C27 VTF 303 A 1 HETATM 28 C C28 VTF . . . D 3 -3.366 12.764 13.61 1 36.74 ? C28 VTF 303 A 1 HETATM 29 C C29 VTF . . . D 3 -2.937 14.084 13.692 1 38.37 ? C29 VTF 303 A 1 HETATM 30 C C30 VTF . . . D 3 -1.954 14.552 12.822 1 37.33 ? C30 VTF 303 A 1 HETATM 31 N N31 VTF . . . D 3 -1.462 15.923 12.937 1 39.41 ? N31 VTF 303 A 1 HETATM 32 C C32 VTF . . . D 3 -1.62 16.427 14.321 1 38.98 ? C32 VTF 303 A 1 HETATM 33 S S33 VTF . . . D 3 -2.207 16.907 11.877 1 41.24 ? S33 VTF 303 A 1 HETATM 34 C C34 VTF . . . D 3 -3.877 17.22 12.423 1 36.23 ? C34 VTF 303 A 1 HETATM 35 O O35 VTF . . . D 3 -1.482 18.138 11.787 1 40.44 ? O35 VTF 303 A 1 HETATM 36 O O36 VTF . . . D 3 -2.228 16.3 10.61 1 37.84 ? O36 VTF 303 A 1 HETATM 37 C C37 VTF . . . D 3 6.914 7.36 6.307 1 34.03 ? C37 VTF 303 A 1 HETATM 38 C C38 VTF . . . D 3 2.767 6.288 3.787 1 49.57 ? C38 VTF 303 A 1 HETATM 39 N N39 VTF . . . D 3 1.975 5.637 3.301 1 56.66 ? N39 VTF 303 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #