data_8QK4
#
_model_server_result.job_id            ibUmrzfgKjh2vXYJ2COh1g 
_model_server_result.datetime_utc      '2024-12-22 06:22:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8qk4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    8QK4 
#
_exptl.entry_id    8QK4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8QK4 
_cell.length_a            52.905 
_cell.length_b            84.79 
_cell.length_c            131.938 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8QK4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K 1 1 
B,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 257 A THR 236 1_555 F NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? 
metalc ? metalc2 E NA NA . A NA 403 1_555 G O2 GOL . A GOL 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.143 ? 
metalc ? metalc3 E NA NA . A NA 403 1_555 G O3 GOL . A GOL 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc4 E NA NA . A NA 403 1_555 H O3 GOL . A GOL 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? 
metalc ? metalc5 F NA NA . A NA 404 1_555 G O1 GOL . A GOL 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc6 F NA NA . A NA 404 1_555 K O HOH . A HOH 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8QK4 
_atom_sites.fract_transf_matrix[1][1]    0.018902 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011794 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007579 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 401 408 GOL GOL . 
D 2 GOL A 1 402 409 GOL GOL . 
E 3 NA A 1 403 1 NA NA . 
F 3 NA A 1 404 2 NA NA . 
G 2 GOL A 1 405 402 GOL GOL . 
H 2 GOL A 1 406 403 GOL GOL . 
I 2 GOL A 1 407 407 GOL GOL . 
J 4 CL A 1 408 1 CL CL . 
K 5 HOH A 1 501 132 HOH HOH . 
K 5 HOH A 2 502 167 HOH HOH . 
K 5 HOH A 3 503 84 HOH HOH . 
K 5 HOH A 4 504 17 HOH HOH . 
K 5 HOH A 5 505 162 HOH HOH . 
K 5 HOH A 6 506 45 HOH HOH . 
K 5 HOH A 7 507 426 HOH HOH . 
K 5 HOH A 8 508 364 HOH HOH . 
K 5 HOH A 9 509 292 HOH HOH . 
K 5 HOH A 10 510 102 HOH HOH . 
K 5 HOH A 11 511 183 HOH HOH . 
K 5 HOH A 12 512 27 HOH HOH . 
K 5 HOH A 13 513 260 HOH HOH . 
K 5 HOH A 14 514 18 HOH HOH . 
K 5 HOH A 15 515 180 HOH HOH . 
K 5 HOH A 16 516 289 HOH HOH . 
K 5 HOH A 17 517 523 HOH HOH . 
K 5 HOH A 18 518 112 HOH HOH . 
K 5 HOH A 19 519 509 HOH HOH . 
K 5 HOH A 20 520 173 HOH HOH . 
K 5 HOH A 21 521 35 HOH HOH . 
K 5 HOH A 22 522 57 HOH HOH . 
K 5 HOH A 23 523 277 HOH HOH . 
K 5 HOH A 24 524 507 HOH HOH . 
K 5 HOH A 25 525 4 HOH HOH . 
K 5 HOH A 26 526 32 HOH HOH . 
K 5 HOH A 27 527 80 HOH HOH . 
K 5 HOH A 28 528 26 HOH HOH . 
K 5 HOH A 29 529 66 HOH HOH . 
K 5 HOH A 30 530 101 HOH HOH . 
K 5 HOH A 31 531 20 HOH HOH . 
K 5 HOH A 32 532 504 HOH HOH . 
K 5 HOH A 33 533 114 HOH HOH . 
K 5 HOH A 34 534 67 HOH HOH . 
K 5 HOH A 35 535 13 HOH HOH . 
K 5 HOH A 36 536 404 HOH HOH . 
K 5 HOH A 37 537 171 HOH HOH . 
K 5 HOH A 38 538 24 HOH HOH . 
K 5 HOH A 39 539 72 HOH HOH . 
K 5 HOH A 40 540 94 HOH HOH . 
K 5 HOH A 41 541 68 HOH HOH . 
K 5 HOH A 42 542 76 HOH HOH . 
K 5 HOH A 43 543 96 HOH HOH . 
K 5 HOH A 44 544 243 HOH HOH . 
K 5 HOH A 45 545 71 HOH HOH . 
K 5 HOH A 46 546 8 HOH HOH . 
K 5 HOH A 47 547 139 HOH HOH . 
K 5 HOH A 48 548 141 HOH HOH . 
K 5 HOH A 49 549 100 HOH HOH . 
K 5 HOH A 50 550 77 HOH HOH . 
K 5 HOH A 51 551 39 HOH HOH . 
K 5 HOH A 52 552 179 HOH HOH . 
K 5 HOH A 53 553 49 HOH HOH . 
K 5 HOH A 54 554 127 HOH HOH . 
K 5 HOH A 55 555 6 HOH HOH . 
K 5 HOH A 56 556 69 HOH HOH . 
K 5 HOH A 57 557 214 HOH HOH . 
K 5 HOH A 58 558 349 HOH HOH . 
K 5 HOH A 59 559 14 HOH HOH . 
K 5 HOH A 60 560 95 HOH HOH . 
K 5 HOH A 61 561 2 HOH HOH . 
K 5 HOH A 62 562 21 HOH HOH . 
K 5 HOH A 63 563 29 HOH HOH . 
K 5 HOH A 64 564 28 HOH HOH . 
K 5 HOH A 65 565 88 HOH HOH . 
K 5 HOH A 66 566 505 HOH HOH . 
K 5 HOH A 67 567 58 HOH HOH . 
K 5 HOH A 68 568 203 HOH HOH . 
K 5 HOH A 69 569 22 HOH HOH . 
K 5 HOH A 70 570 91 HOH HOH . 
K 5 HOH A 71 571 129 HOH HOH . 
K 5 HOH A 72 572 19 HOH HOH . 
K 5 HOH A 73 573 70 HOH HOH . 
K 5 HOH A 74 574 184 HOH HOH . 
K 5 HOH A 75 575 54 HOH HOH . 
K 5 HOH A 76 576 207 HOH HOH . 
K 5 HOH A 77 577 15 HOH HOH . 
K 5 HOH A 78 578 37 HOH HOH . 
K 5 HOH A 79 579 36 HOH HOH . 
K 5 HOH A 80 580 142 HOH HOH . 
K 5 HOH A 81 581 144 HOH HOH . 
K 5 HOH A 82 582 87 HOH HOH . 
K 5 HOH A 83 583 128 HOH HOH . 
K 5 HOH A 84 584 286 HOH HOH . 
K 5 HOH A 85 585 16 HOH HOH . 
K 5 HOH A 86 586 5 HOH HOH . 
K 5 HOH A 87 587 297 HOH HOH . 
K 5 HOH A 88 588 314 HOH HOH . 
K 5 HOH A 89 589 65 HOH HOH . 
K 5 HOH A 90 590 75 HOH HOH . 
K 5 HOH A 91 591 48 HOH HOH . 
K 5 HOH A 92 592 106 HOH HOH . 
K 5 HOH A 93 593 263 HOH HOH . 
K 5 HOH A 94 594 104 HOH HOH . 
K 5 HOH A 95 595 61 HOH HOH . 
K 5 HOH A 96 596 181 HOH HOH . 
K 5 HOH A 97 597 12 HOH HOH . 
K 5 HOH A 98 598 201 HOH HOH . 
K 5 HOH A 99 599 47 HOH HOH . 
K 5 HOH A 100 600 281 HOH HOH . 
K 5 HOH A 101 601 301 HOH HOH . 
K 5 HOH A 102 602 143 HOH HOH . 
K 5 HOH A 103 603 230 HOH HOH . 
K 5 HOH A 104 604 147 HOH HOH . 
K 5 HOH A 105 605 108 HOH HOH . 
K 5 HOH A 106 606 38 HOH HOH . 
K 5 HOH A 107 607 234 HOH HOH . 
K 5 HOH A 108 608 119 HOH HOH . 
K 5 HOH A 109 609 83 HOH HOH . 
K 5 HOH A 110 610 79 HOH HOH . 
K 5 HOH A 111 611 483 HOH HOH . 
K 5 HOH A 112 612 130 HOH HOH . 
K 5 HOH A 113 613 367 HOH HOH . 
K 5 HOH A 114 614 487 HOH HOH . 
K 5 HOH A 115 615 258 HOH HOH . 
K 5 HOH A 116 616 299 HOH HOH . 
L 5 HOH B 1 401 190 HOH HOH . 
L 5 HOH B 2 402 522 HOH HOH . 
L 5 HOH B 3 403 7 HOH HOH . 
L 5 HOH B 4 404 133 HOH HOH . 
L 5 HOH B 5 405 134 HOH HOH . 
L 5 HOH B 6 406 30 HOH HOH . 
L 5 HOH B 7 407 519 HOH HOH . 
L 5 HOH B 8 408 43 HOH HOH . 
L 5 HOH B 9 409 50 HOH HOH . 
L 5 HOH B 10 410 90 HOH HOH . 
L 5 HOH B 11 411 151 HOH HOH . 
L 5 HOH B 12 412 316 HOH HOH . 
L 5 HOH B 13 413 99 HOH HOH . 
L 5 HOH B 14 414 25 HOH HOH . 
L 5 HOH B 15 415 516 HOH HOH . 
L 5 HOH B 16 416 64 HOH HOH . 
L 5 HOH B 17 417 328 HOH HOH . 
L 5 HOH B 18 418 44 HOH HOH . 
L 5 HOH B 19 419 198 HOH HOH . 
L 5 HOH B 20 420 482 HOH HOH . 
L 5 HOH B 21 421 55 HOH HOH . 
L 5 HOH B 22 422 82 HOH HOH . 
L 5 HOH B 23 423 225 HOH HOH . 
L 5 HOH B 24 424 518 HOH HOH . 
L 5 HOH B 25 425 520 HOH HOH . 
L 5 HOH B 26 426 56 HOH HOH . 
L 5 HOH B 27 427 46 HOH HOH . 
L 5 HOH B 28 428 63 HOH HOH . 
L 5 HOH B 29 429 189 HOH HOH . 
L 5 HOH B 30 430 337 HOH HOH . 
L 5 HOH B 31 431 23 HOH HOH . 
L 5 HOH B 32 432 40 HOH HOH . 
L 5 HOH B 33 433 51 HOH HOH . 
L 5 HOH B 34 434 107 HOH HOH . 
L 5 HOH B 35 435 109 HOH HOH . 
L 5 HOH B 36 436 41 HOH HOH . 
L 5 HOH B 37 437 10 HOH HOH . 
L 5 HOH B 38 438 11 HOH HOH . 
L 5 HOH B 39 439 110 HOH HOH . 
L 5 HOH B 40 440 31 HOH HOH . 
L 5 HOH B 41 441 288 HOH HOH . 
L 5 HOH B 42 442 34 HOH HOH . 
L 5 HOH B 43 443 521 HOH HOH . 
L 5 HOH B 44 444 510 HOH HOH . 
L 5 HOH B 45 445 318 HOH HOH . 
L 5 HOH B 46 446 199 HOH HOH . 
L 5 HOH B 47 447 120 HOH HOH . 
L 5 HOH B 48 448 53 HOH HOH . 
L 5 HOH B 49 449 499 HOH HOH . 
L 5 HOH B 50 450 62 HOH HOH . 
L 5 HOH B 51 451 78 HOH HOH . 
L 5 HOH B 52 452 371 HOH HOH . 
L 5 HOH B 53 453 498 HOH HOH . 
L 5 HOH B 54 454 346 HOH HOH . 
L 5 HOH B 55 455 124 HOH HOH . 
L 5 HOH B 56 456 97 HOH HOH . 
L 5 HOH B 57 457 152 HOH HOH . 
L 5 HOH B 58 458 514 HOH HOH . 
L 5 HOH B 59 459 116 HOH HOH . 
L 5 HOH B 60 460 170 HOH HOH . 
L 5 HOH B 61 461 122 HOH HOH . 
L 5 HOH B 62 462 256 HOH HOH . 
L 5 HOH B 63 463 330 HOH HOH . 
L 5 HOH B 64 464 197 HOH HOH . 
L 5 HOH B 65 465 204 HOH HOH . 
L 5 HOH B 66 466 115 HOH HOH . 
L 5 HOH B 67 467 436 HOH HOH . 
L 5 HOH B 68 468 135 HOH HOH . 
L 5 HOH B 69 469 191 HOH HOH . 
L 5 HOH B 70 470 294 HOH HOH . 
L 5 HOH B 71 471 512 HOH HOH . 
L 5 HOH B 72 472 515 HOH HOH . 
L 5 HOH B 73 473 503 HOH HOH . 
L 5 HOH B 74 474 192 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 -13.568 38.985 -22.5 1 43.17 0 C1 GOL 401 A 1 
HETATM 2 O O1 GOL . . . C 2 -13.788 40.267 -23.081 1 32.72 0 O1 GOL 401 A 1 
HETATM 3 C C2 GOL . . . C 2 -12.312 38.331 -23.048 1 43.9 0 C2 GOL 401 A 1 
HETATM 4 O O2 GOL . . . C 2 -11.115 38.882 -22.502 1 36.8 0 O2 GOL 401 A 1 
HETATM 5 C C3 GOL . . . C 2 -12.295 36.857 -22.787 1 38.86 0 C3 GOL 401 A 1 
HETATM 6 O O3 GOL . . . C 2 -12.894 36.163 -23.862 1 43.92 0 O3 GOL 401 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           391 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#