data_8QK9 # _model_server_result.job_id ClCQw-xSqEe4VKYGNFrc4w _model_server_result.datetime_utc '2024-10-23 14:34:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qk9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 8QK9 # _exptl.entry_id 8QK9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 596.642 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[methyl(methylsulfonyl)amino]-~{N}-[4-[4-[3-(trifluoromethyl)phenyl]piperazin-1-yl]sulfonylphenyl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.32 _cell.angle_gamma 90 _cell.entry_id 8QK9 _cell.length_a 122.309 _cell.length_b 81.178 _cell.length_c 32.974 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 8 A ASP 8 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc2 A NE2 HIS 10 A HIS 10 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc3 A OD2 ASP 41 A ASP 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc4 A OD2 ASP 41 A ASP 41 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc5 A OD1 ASN 79 A ASN 79 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc6 A NE2 HIS 114 A HIS 114 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc7 A ND1 HIS 195 A HIS 195 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc8 A NE2 HIS 197 A HIS 197 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc9 B MN MN . A MN 301 1_555 E O HOH . A HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc10 C MN MN . A MN 302 1_555 E O HOH . A HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? # _chem_comp.formula 'C26 H27 F3 N4 O5 S2' _chem_comp.formula_weight 596.642 _chem_comp.id VQ9 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[methyl(methylsulfonyl)amino]-~{N}-[4-[4-[3-(trifluoromethyl)phenyl]piperazin-1-yl]sulfonylphenyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F40 C37 VQ9 sing 376 n n F39 C37 VQ9 sing 377 n n F38 C37 VQ9 sing 378 n n C37 C5 VQ9 sing 379 n n C5 C4 VQ9 doub 380 n y C5 C6 VQ9 sing 381 n y C4 C3 VQ9 sing 382 n y C6 C1 VQ9 doub 383 n y C8 C9 VQ9 sing 384 n n C8 N7 VQ9 sing 385 n n C3 N7 VQ9 sing 386 n n C3 C2 VQ9 doub 387 n y C1 C2 VQ9 sing 388 n y C9 N12 VQ9 sing 389 n n N7 C10 VQ9 sing 390 n n N12 C11 VQ9 sing 391 n n N12 S13 VQ9 sing 392 n n O15 S13 VQ9 doub 393 n n C10 C11 VQ9 sing 394 n n C20 C21 VQ9 doub 395 n y C20 C14 VQ9 sing 396 n y O24 C23 VQ9 doub 397 n n C21 C19 VQ9 sing 398 n y S13 C14 VQ9 sing 399 n n S13 O16 VQ9 doub 400 n n C23 C25 VQ9 sing 401 n n C23 N22 VQ9 sing 402 n n C14 C17 VQ9 doub 403 n y C32 N31 VQ9 sing 404 n n C25 C26 VQ9 doub 405 n y C25 C30 VQ9 sing 406 n y C26 C27 VQ9 sing 407 n y C19 N22 VQ9 sing 408 n n C19 C18 VQ9 doub 409 n y N31 C30 VQ9 sing 410 n n N31 S33 VQ9 sing 411 n n C30 C29 VQ9 doub 412 n y C27 C28 VQ9 doub 413 n y C17 C18 VQ9 sing 414 n y C29 C28 VQ9 sing 415 n y O35 S33 VQ9 doub 416 n n S33 O36 VQ9 doub 417 n n S33 C34 VQ9 sing 418 n n C10 H1 VQ9 sing 419 n n C10 H2 VQ9 sing 420 n n C11 H3 VQ9 sing 421 n n C11 H4 VQ9 sing 422 n n C1 H5 VQ9 sing 423 n n C2 H6 VQ9 sing 424 n n C4 H7 VQ9 sing 425 n n C6 H8 VQ9 sing 426 n n C8 H9 VQ9 sing 427 n n C8 H10 VQ9 sing 428 n n C9 H11 VQ9 sing 429 n n C9 H12 VQ9 sing 430 n n C17 H13 VQ9 sing 431 n n C18 H14 VQ9 sing 432 n n C20 H15 VQ9 sing 433 n n C21 H16 VQ9 sing 434 n n N22 H17 VQ9 sing 435 n n C26 H18 VQ9 sing 436 n n C27 H19 VQ9 sing 437 n n C28 H20 VQ9 sing 438 n n C29 H21 VQ9 sing 439 n n C32 H22 VQ9 sing 440 n n C32 H23 VQ9 sing 441 n n C32 H24 VQ9 sing 442 n n C34 H25 VQ9 sing 443 n n C34 H26 VQ9 sing 444 n n C34 H27 VQ9 sing 445 n n # _atom_sites.entry_id 8QK9 _atom_sites.fract_transf_matrix[1][1] 0.008176 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001935 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012319 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 301 MN MN . C 2 MN A 1 302 302 MN MN . D 3 VQ9 A 1 303 401 VQ9 L5X . E 4 HOH A 1 401 12 HOH HOH . E 4 HOH A 2 402 40 HOH HOH . E 4 HOH A 3 403 30 HOH HOH . E 4 HOH A 4 404 68 HOH HOH . E 4 HOH A 5 405 63 HOH HOH . E 4 HOH A 6 406 42 HOH HOH . E 4 HOH A 7 407 55 HOH HOH . E 4 HOH A 8 408 49 HOH HOH . E 4 HOH A 9 409 52 HOH HOH . E 4 HOH A 10 410 33 HOH HOH . E 4 HOH A 11 411 22 HOH HOH . E 4 HOH A 12 412 45 HOH HOH . E 4 HOH A 13 413 5 HOH HOH . E 4 HOH A 14 414 46 HOH HOH . E 4 HOH A 15 415 4 HOH HOH . E 4 HOH A 16 416 65 HOH HOH . E 4 HOH A 17 417 58 HOH HOH . E 4 HOH A 18 418 16 HOH HOH . E 4 HOH A 19 419 11 HOH HOH . E 4 HOH A 20 420 6 HOH HOH . E 4 HOH A 21 421 41 HOH HOH . E 4 HOH A 22 422 39 HOH HOH . E 4 HOH A 23 423 38 HOH HOH . E 4 HOH A 24 424 56 HOH HOH . E 4 HOH A 25 425 10 HOH HOH . E 4 HOH A 26 426 59 HOH HOH . E 4 HOH A 27 427 64 HOH HOH . E 4 HOH A 28 428 50 HOH HOH . E 4 HOH A 29 429 9 HOH HOH . E 4 HOH A 30 430 73 HOH HOH . E 4 HOH A 31 431 43 HOH HOH . E 4 HOH A 32 432 19 HOH HOH . E 4 HOH A 33 433 20 HOH HOH . E 4 HOH A 34 434 13 HOH HOH . E 4 HOH A 35 435 35 HOH HOH . E 4 HOH A 36 436 1 HOH HOH . E 4 HOH A 37 437 8 HOH HOH . E 4 HOH A 38 438 37 HOH HOH . E 4 HOH A 39 439 66 HOH HOH . E 4 HOH A 40 440 32 HOH HOH . E 4 HOH A 41 441 14 HOH HOH . E 4 HOH A 42 442 18 HOH HOH . E 4 HOH A 43 443 7 HOH HOH . E 4 HOH A 44 444 1 HOH HOH . E 4 HOH A 45 445 51 HOH HOH . E 4 HOH A 46 446 31 HOH HOH . E 4 HOH A 47 447 24 HOH HOH . E 4 HOH A 48 448 25 HOH HOH . E 4 HOH A 49 449 61 HOH HOH . E 4 HOH A 50 450 3 HOH HOH . E 4 HOH A 51 451 2 HOH HOH . E 4 HOH A 52 452 15 HOH HOH . E 4 HOH A 53 453 23 HOH HOH . E 4 HOH A 54 454 44 HOH HOH . E 4 HOH A 55 455 21 HOH HOH . E 4 HOH A 56 456 70 HOH HOH . E 4 HOH A 57 457 72 HOH HOH . E 4 HOH A 58 458 60 HOH HOH . E 4 HOH A 59 459 57 HOH HOH . E 4 HOH A 60 460 62 HOH HOH . E 4 HOH A 61 461 26 HOH HOH . E 4 HOH A 62 462 47 HOH HOH . E 4 HOH A 63 463 28 HOH HOH . E 4 HOH A 64 464 71 HOH HOH . E 4 HOH A 65 465 27 HOH HOH . E 4 HOH A 66 466 17 HOH HOH . E 4 HOH A 67 467 67 HOH HOH . E 4 HOH A 68 468 69 HOH HOH . E 4 HOH A 69 469 54 HOH HOH . E 4 HOH A 70 470 29 HOH HOH . E 4 HOH A 71 471 48 HOH HOH . E 4 HOH A 72 472 53 HOH HOH . E 4 HOH A 73 473 36 HOH HOH . E 4 HOH A 74 474 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 VQ9 . . . D 3 46.984 1.729 20.019 1 41.61 ? C10 VQ9 303 A 1 HETATM 2 C C11 VQ9 . . . D 3 45.697 2.188 20.704 1 44.26 ? C11 VQ9 303 A 1 HETATM 3 C C1 VQ9 . . . D 3 50.129 4.227 18.153 1 56.02 ? C1 VQ9 303 A 1 HETATM 4 C C2 VQ9 . . . D 3 49.012 3.649 18.776 1 52.6 ? C2 VQ9 303 A 1 HETATM 5 C C3 VQ9 . . . D 3 48.06 2.887 18.048 1 52.54 ? C3 VQ9 303 A 1 HETATM 6 C C4 VQ9 . . . D 3 48.227 2.778 16.69 1 47.67 ? C4 VQ9 303 A 1 HETATM 7 C C5 VQ9 . . . D 3 49.312 3.385 16.077 1 54.22 ? C5 VQ9 303 A 1 HETATM 8 C C6 VQ9 . . . D 3 50.276 4.085 16.794 1 49.65 ? C6 VQ9 303 A 1 HETATM 9 N N7 VQ9 . . . D 3 46.859 2.34 18.683 1 48.67 ? N7 VQ9 303 A 1 HETATM 10 C C8 VQ9 . . . D 3 45.84 1.635 17.851 1 45.18 ? C8 VQ9 303 A 1 HETATM 11 C C9 VQ9 . . . D 3 44.485 1.851 18.535 1 43.75 ? C9 VQ9 303 A 1 HETATM 12 N N12 VQ9 . . . D 3 44.578 1.505 19.986 1 42.82 ? N12 VQ9 303 A 1 HETATM 13 S S13 VQ9 . . . D 3 43.162 1.708 20.779 1 44.2 ? S13 VQ9 303 A 1 HETATM 14 C C14 VQ9 . . . D 3 42.807 3.42 20.964 1 41.87 ? C14 VQ9 303 A 1 HETATM 15 O O15 VQ9 . . . D 3 42.108 1.058 20 1 42.79 ? O15 VQ9 303 A 1 HETATM 16 O O16 VQ9 . . . D 3 43.253 1.148 22.116 1 42.65 ? O16 VQ9 303 A 1 HETATM 17 C C17 VQ9 . . . D 3 43.37 4.088 22.067 1 45.51 ? C17 VQ9 303 A 1 HETATM 18 C C18 VQ9 . . . D 3 43.156 5.441 22.245 1 46.25 ? C18 VQ9 303 A 1 HETATM 19 C C19 VQ9 . . . D 3 42.353 6.143 21.344 1 47.84 ? C19 VQ9 303 A 1 HETATM 20 C C20 VQ9 . . . D 3 42.051 4.105 20.022 1 39.85 ? C20 VQ9 303 A 1 HETATM 21 C C21 VQ9 . . . D 3 41.826 5.473 20.208 1 44.64 ? C21 VQ9 303 A 1 HETATM 22 N N22 VQ9 . . . D 3 42.227 7.539 21.552 1 44.54 ? N22 VQ9 303 A 1 HETATM 23 C C23 VQ9 . . . D 3 41.423 8.422 20.895 1 50.21 ? C23 VQ9 303 A 1 HETATM 24 O O24 VQ9 . . . D 3 40.548 8.031 20.12 1 47.23 ? O24 VQ9 303 A 1 HETATM 25 C C25 VQ9 . . . D 3 41.582 9.893 21.285 1 49.02 ? C25 VQ9 303 A 1 HETATM 26 C C26 VQ9 . . . D 3 42.892 10.43 21.326 1 47.97 ? C26 VQ9 303 A 1 HETATM 27 C C27 VQ9 . . . D 3 43.113 11.758 21.742 1 46 ? C27 VQ9 303 A 1 HETATM 28 C C28 VQ9 . . . D 3 42.047 12.571 22.112 1 48.5 ? C28 VQ9 303 A 1 HETATM 29 C C29 VQ9 . . . D 3 40.732 12.052 22.094 1 48.96 ? C29 VQ9 303 A 1 HETATM 30 C C30 VQ9 . . . D 3 40.49 10.704 21.674 1 50.5 ? C30 VQ9 303 A 1 HETATM 31 N N31 VQ9 . . . D 3 39.112 10.117 21.637 1 52.33 ? N31 VQ9 303 A 1 HETATM 32 C C32 VQ9 . . . D 3 38.033 11.026 21.138 1 46.6 ? C32 VQ9 303 A 1 HETATM 33 S S33 VQ9 . . . D 3 38.672 9.357 23.049 1 52.22 ? S33 VQ9 303 A 1 HETATM 34 C C34 VQ9 . . . D 3 38.287 10.562 24.313 1 50.97 ? C34 VQ9 303 A 1 HETATM 35 O O35 VQ9 . . . D 3 37.567 8.519 22.757 1 55.96 ? O35 VQ9 303 A 1 HETATM 36 O O36 VQ9 . . . D 3 39.757 8.499 23.464 1 50.57 ? O36 VQ9 303 A 1 HETATM 37 C C37 VQ9 . . . D 3 49.441 3.183 14.592 1 68.18 ? C37 VQ9 303 A 1 HETATM 38 F F38 VQ9 . . . D 3 50.749 3.003 14.275 1 90.97 ? F38 VQ9 303 A 1 HETATM 39 F F39 VQ9 . . . D 3 48.706 2.122 14.226 1 79.46 ? F39 VQ9 303 A 1 HETATM 40 F F40 VQ9 . . . D 3 48.938 4.212 13.909 1 76.52 ? F40 VQ9 303 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 40 #