data_8QKA
#
_model_server_result.job_id            9BmKExlFU99DIpdpJkYXXQ 
_model_server_result.datetime_utc      '2024-10-23 14:32:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8qka 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    8QKA 
#
_exptl.entry_id    8QKA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              451.56 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[methyl(methylsulfonyl)amino]-~{N}-(4-piperidin-1-ylsulfonylphenyl)benzamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8QKA 
_cell.length_a            60.013 
_cell.length_b            60.013 
_cell.length_c            284.658 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8QKA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,B,C,D,E 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -30.0065 51.972783 47.443 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 8 A ASP 8 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc2 A NE2 HIS 10 A HIS 10 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc3 A OD2 ASP 41 A ASP 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc4 A OD2 ASP 41 A ASP 41 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc5 A OD1 ASN 79 A ASN 79 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc6 A NE2 HIS 114 A HIS 114 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc7 A ND1 HIS 195 A HIS 195 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc8 A NE2 HIS 197 A HIS 197 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc9 B MN MN . A MN 301 1_555 E O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc10 C MN MN . A MN 302 1_555 E O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
#
_chem_comp.formula           'C20 H25 N3 O5 S2' 
_chem_comp.formula_weight    451.56 
_chem_comp.id                VTK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[methyl(methylsulfonyl)amino]-~{N}-(4-piperidin-1-ylsulfonylphenyl)benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C11 VTK sing 376 n n 
C10 C7 VTK sing 377 n n 
O16 S13 VTK doub 378 n n 
C11 N12 VTK sing 379 n n 
C7 C8 VTK sing 380 n n 
N12 S13 VTK sing 381 n n 
N12 C9 VTK sing 382 n n 
C8 C9 VTK sing 383 n n 
S13 O15 VTK doub 384 n n 
S13 C14 VTK sing 385 n n 
C17 C14 VTK doub 386 n y 
C17 C18 VTK sing 387 n y 
C14 C20 VTK sing 388 n y 
C18 C19 VTK doub 389 n y 
C20 C21 VTK doub 390 n y 
C19 C21 VTK sing 391 n y 
C19 N22 VTK sing 392 n n 
N22 C23 VTK sing 393 n n 
O36 S33 VTK doub 394 n n 
C23 O24 VTK doub 395 n n 
C23 C25 VTK sing 396 n n 
C26 C25 VTK doub 397 n y 
C26 C27 VTK sing 398 n y 
C25 C30 VTK sing 399 n y 
S33 O35 VTK doub 400 n n 
S33 C34 VTK sing 401 n n 
S33 N31 VTK sing 402 n n 
C27 C28 VTK doub 403 n y 
C30 N31 VTK sing 404 n n 
C30 C29 VTK doub 405 n y 
N31 C32 VTK sing 406 n n 
C28 C29 VTK sing 407 n y 
C7 H1 VTK sing 408 n n 
C7 H2 VTK sing 409 n n 
C8 H3 VTK sing 410 n n 
C8 H4 VTK sing 411 n n 
C9 H5 VTK sing 412 n n 
C9 H6 VTK sing 413 n n 
C10 H7 VTK sing 414 n n 
C10 H8 VTK sing 415 n n 
C11 H9 VTK sing 416 n n 
C11 H10 VTK sing 417 n n 
C17 H11 VTK sing 418 n n 
C18 H12 VTK sing 419 n n 
C20 H13 VTK sing 420 n n 
C21 H14 VTK sing 421 n n 
N22 H15 VTK sing 422 n n 
C26 H16 VTK sing 423 n n 
C27 H17 VTK sing 424 n n 
C28 H18 VTK sing 425 n n 
C29 H19 VTK sing 426 n n 
C32 H20 VTK sing 427 n n 
C32 H21 VTK sing 428 n n 
C32 H22 VTK sing 429 n n 
C34 H23 VTK sing 430 n n 
C34 H24 VTK sing 431 n n 
C34 H25 VTK sing 432 n n 
#
_atom_sites.entry_id                     8QKA 
_atom_sites.fract_transf_matrix[1][1]    0.016663 
_atom_sites.fract_transf_matrix[1][2]    0.00962 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019241 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003513 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 301 301 MN MN . 
C 2 MN A 1 302 302 MN MN . 
D 3 VTK A 1 303 401 VTK J52 . 
E 4 HOH A 1 401 24 HOH HOH . 
E 4 HOH A 2 402 37 HOH HOH . 
E 4 HOH A 3 403 34 HOH HOH . 
E 4 HOH A 4 404 5 HOH HOH . 
E 4 HOH A 5 405 22 HOH HOH . 
E 4 HOH A 6 406 16 HOH HOH . 
E 4 HOH A 7 407 30 HOH HOH . 
E 4 HOH A 8 408 15 HOH HOH . 
E 4 HOH A 9 409 21 HOH HOH . 
E 4 HOH A 10 410 10 HOH HOH . 
E 4 HOH A 11 411 3 HOH HOH . 
E 4 HOH A 12 412 7 HOH HOH . 
E 4 HOH A 13 413 23 HOH HOH . 
E 4 HOH A 14 414 38 HOH HOH . 
E 4 HOH A 15 415 9 HOH HOH . 
E 4 HOH A 16 416 1 HOH HOH . 
E 4 HOH A 17 417 12 HOH HOH . 
E 4 HOH A 18 418 20 HOH HOH . 
E 4 HOH A 19 419 35 HOH HOH . 
E 4 HOH A 20 420 11 HOH HOH . 
E 4 HOH A 21 421 26 HOH HOH . 
E 4 HOH A 22 422 28 HOH HOH . 
E 4 HOH A 23 423 1 HOH HOH . 
E 4 HOH A 24 424 25 HOH HOH . 
E 4 HOH A 25 425 29 HOH HOH . 
E 4 HOH A 26 426 8 HOH HOH . 
E 4 HOH A 27 427 6 HOH HOH . 
E 4 HOH A 28 428 4 HOH HOH . 
E 4 HOH A 29 429 14 HOH HOH . 
E 4 HOH A 30 430 40 HOH HOH . 
E 4 HOH A 31 431 33 HOH HOH . 
E 4 HOH A 32 432 2 HOH HOH . 
E 4 HOH A 33 433 36 HOH HOH . 
E 4 HOH A 34 434 18 HOH HOH . 
E 4 HOH A 35 435 39 HOH HOH . 
E 4 HOH A 36 436 27 HOH HOH . 
E 4 HOH A 37 437 32 HOH HOH . 
E 4 HOH A 38 438 42 HOH HOH . 
E 4 HOH A 39 439 19 HOH HOH . 
E 4 HOH A 40 440 13 HOH HOH . 
E 4 HOH A 41 441 31 HOH HOH . 
E 4 HOH A 42 442 41 HOH HOH . 
E 4 HOH A 43 443 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 VTK . . . D 3 4.655 10.38 4.221 1 42.12 ? C7 VTK 303 A 1 
HETATM 2 C C8 VTK . . . D 3 5.69 11.384 4.785 1 38.88 ? C8 VTK 303 A 1 
HETATM 3 C C9 VTK . . . D 3 4.943 12.551 5.494 1 39.11 ? C9 VTK 303 A 1 
HETATM 4 C C10 VTK . . . D 3 3.634 11.087 3.305 1 44.51 ? C10 VTK 303 A 1 
HETATM 5 C C11 VTK . . . D 3 2.999 12.297 4.022 1 42.26 ? C11 VTK 303 A 1 
HETATM 6 N N12 VTK . . . D 3 4.076 13.232 4.484 1 41.08 ? N12 VTK 303 A 1 
HETATM 7 S S13 VTK . . . D 3 3.488 14.762 4.97 1 45.36 ? S13 VTK 303 A 1 
HETATM 8 C C14 VTK . . . D 3 2.414 14.563 6.364 1 41.17 ? C14 VTK 303 A 1 
HETATM 9 O O15 VTK . . . D 3 4.647 15.596 5.229 1 36.57 ? O15 VTK 303 A 1 
HETATM 10 O O16 VTK . . . D 3 2.718 15.28 3.901 1 42.06 ? O16 VTK 303 A 1 
HETATM 11 C C17 VTK . . . D 3 1.077 14.205 6.146 1 41.12 ? C17 VTK 303 A 1 
HETATM 12 C C18 VTK . . . D 3 0.204 14.003 7.217 1 35.73 ? C18 VTK 303 A 1 
HETATM 13 C C19 VTK . . . D 3 0.654 14.157 8.516 1 36.93 ? C19 VTK 303 A 1 
HETATM 14 C C20 VTK . . . D 3 2.883 14.702 7.669 1 37.47 ? C20 VTK 303 A 1 
HETATM 15 C C21 VTK . . . D 3 1.994 14.517 8.746 1 33.85 ? C21 VTK 303 A 1 
HETATM 16 N N22 VTK . . . D 3 -0.253 13.899 9.544 1 38.23 ? N22 VTK 303 A 1 
HETATM 17 C C23 VTK . . . D 3 -0.136 14.181 10.873 1 41.8 ? C23 VTK 303 A 1 
HETATM 18 O O24 VTK . . . D 3 0.815 14.82 11.296 1 43.27 ? O24 VTK 303 A 1 
HETATM 19 C C25 VTK . . . D 3 -1.266 13.734 11.813 1 44.88 ? C25 VTK 303 A 1 
HETATM 20 C C26 VTK . . . D 3 -1.746 12.403 11.708 1 44.88 ? C26 VTK 303 A 1 
HETATM 21 C C27 VTK . . . D 3 -2.78 11.944 12.536 1 45.85 ? C27 VTK 303 A 1 
HETATM 22 C C28 VTK . . . D 3 -3.35 12.802 13.476 1 45.62 ? C28 VTK 303 A 1 
HETATM 23 C C29 VTK . . . D 3 -2.884 14.116 13.624 1 42.72 ? C29 VTK 303 A 1 
HETATM 24 C C30 VTK . . . D 3 -1.85 14.602 12.79 1 45.17 ? C30 VTK 303 A 1 
HETATM 25 N N31 VTK . . . D 3 -1.328 15.977 12.965 1 48.86 ? N31 VTK 303 A 1 
HETATM 26 C C32 VTK . . . D 3 -1.477 16.491 14.372 1 45.99 ? C32 VTK 303 A 1 
HETATM 27 S S33 VTK . . . D 3 -2.001 17.068 11.925 1 53.42 ? S33 VTK 303 A 1 
HETATM 28 C C34 VTK . . . D 3 -3.717 17.288 12.366 1 41.76 ? C34 VTK 303 A 1 
HETATM 29 O O35 VTK . . . D 3 -1.256 18.315 12.036 1 52.54 ? O35 VTK 303 A 1 
HETATM 30 O O36 VTK . . . D 3 -1.898 16.565 10.596 1 49.05 ? O36 VTK 303 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           206 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           30 
#