data_8QLR # _model_server_result.job_id c_Rc8hJUAfp5n8s6DR6iQA _model_server_result.datetime_utc '2025-01-10 08:44:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qlr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 8QLR # _exptl.entry_id 8QLR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 509 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-(4-azanylbutyl)-2-[1,3-bis(oxidanyl)propan-2-ylamino]-6-[2-chloranyl-4-(6-methylpyridin-2-yl)phenyl]pyrido[2,3-d]pyrimidin-7-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.31 _cell.angle_gamma 90 _cell.entry_id 8QLR _cell.length_a 55.468 _cell.length_b 93.55 _cell.length_c 61.792 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QLR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C26 H29 Cl N6 O3' _chem_comp.formula_weight 509 _chem_comp.id VYN _chem_comp.mon_nstd_flag . _chem_comp.name 8-(4-azanylbutyl)-2-[1,3-bis(oxidanyl)propan-2-ylamino]-6-[2-chloranyl-4-(6-methylpyridin-2-yl)phenyl]pyrido[2,3-d]pyrimidin-7-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 O1 VYN sing 385 n n C17 C15 VYN sing 386 n n C15 N1 VYN sing 387 n n C15 C16 VYN sing 388 n n O C16 VYN sing 389 n n N1 C14 VYN sing 390 n n N C14 VYN doub 391 n y N C13 VYN sing 392 n y C14 N2 VYN sing 393 n y C13 C12 VYN doub 394 n y N2 C18 VYN doub 395 n y C12 C18 VYN sing 396 n y C12 C11 VYN sing 397 n n C18 N3 VYN sing 398 n n C20 C19 VYN sing 399 n n C20 C21 VYN sing 400 n n C22 C21 VYN sing 401 n n C22 N4 VYN sing 402 n n C11 C10 VYN doub 403 n n N3 C19 VYN sing 404 n n N3 C23 VYN sing 405 n n C10 C23 VYN sing 406 n n C10 C9 VYN sing 407 n n C23 O2 VYN doub 408 n n C9 C8 VYN doub 409 n y C9 C24 VYN sing 410 n y CL C24 VYN sing 411 n n C8 C7 VYN sing 412 n y C24 C25 VYN doub 413 n y C7 C6 VYN doub 414 n y C25 C6 VYN sing 415 n y C6 C5 VYN sing 416 n n C5 C4 VYN doub 417 n y C5 N5 VYN sing 418 n y C4 C3 VYN sing 419 n y N5 C1 VYN doub 420 n y C3 C2 VYN doub 421 n y C1 C2 VYN sing 422 n y C1 C VYN sing 423 n n N1 H1 VYN sing 424 n n C2 H2 VYN sing 425 n n C4 H3 VYN sing 426 n n C8 H4 VYN sing 427 n n C25 H5 VYN sing 428 n n C3 H6 VYN sing 429 n n C H7 VYN sing 430 n n C H8 VYN sing 431 n n C H9 VYN sing 432 n n C7 H10 VYN sing 433 n n C19 H11 VYN sing 434 n n C19 H12 VYN sing 435 n n C20 H13 VYN sing 436 n n C20 H14 VYN sing 437 n n C21 H15 VYN sing 438 n n C21 H16 VYN sing 439 n n C22 H17 VYN sing 440 n n C22 H18 VYN sing 441 n n N4 H19 VYN sing 442 n n N4 H20 VYN sing 443 n n C11 H22 VYN sing 444 n n C13 H23 VYN sing 445 n n C15 H24 VYN sing 446 n n C17 H25 VYN sing 447 n n C17 H26 VYN sing 448 n n O1 H27 VYN sing 449 n n C16 H28 VYN sing 450 n n C16 H29 VYN sing 451 n n O H30 VYN sing 452 n n # _atom_sites.entry_id 8QLR _atom_sites.fract_transf_matrix[1][1] 0.018028 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000727 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VYN B 1 401 401 VYN M24 . D 3 EDO B 1 402 501 EDO EDO . E 3 EDO B 1 403 601 EDO EDO . F 2 VYN A 1 401 401 VYN M24 . G 3 EDO A 1 402 501 EDO EDO . H 4 HOH B 1 501 24 HOH HOH . H 4 HOH B 2 502 21 HOH HOH . H 4 HOH B 3 503 80 HOH HOH . H 4 HOH B 4 504 155 HOH HOH . H 4 HOH B 5 505 101 HOH HOH . H 4 HOH B 6 506 45 HOH HOH . H 4 HOH B 7 507 126 HOH HOH . H 4 HOH B 8 508 41 HOH HOH . H 4 HOH B 9 509 18 HOH HOH . H 4 HOH B 10 510 145 HOH HOH . H 4 HOH B 11 511 22 HOH HOH . H 4 HOH B 12 512 55 HOH HOH . H 4 HOH B 13 513 82 HOH HOH . H 4 HOH B 14 514 14 HOH HOH . H 4 HOH B 15 515 50 HOH HOH . H 4 HOH B 16 516 213 HOH HOH . H 4 HOH B 17 517 168 HOH HOH . H 4 HOH B 18 518 89 HOH HOH . H 4 HOH B 19 519 116 HOH HOH . H 4 HOH B 20 520 227 HOH HOH . H 4 HOH B 21 521 3 HOH HOH . H 4 HOH B 22 522 122 HOH HOH . H 4 HOH B 23 523 217 HOH HOH . H 4 HOH B 24 524 144 HOH HOH . H 4 HOH B 25 525 218 HOH HOH . H 4 HOH B 26 526 75 HOH HOH . H 4 HOH B 27 527 42 HOH HOH . H 4 HOH B 28 528 15 HOH HOH . H 4 HOH B 29 529 28 HOH HOH . H 4 HOH B 30 530 150 HOH HOH . H 4 HOH B 31 531 13 HOH HOH . H 4 HOH B 32 532 141 HOH HOH . H 4 HOH B 33 533 1 HOH HOH . H 4 HOH B 34 534 61 HOH HOH . H 4 HOH B 35 535 67 HOH HOH . H 4 HOH B 36 536 134 HOH HOH . H 4 HOH B 37 537 202 HOH HOH . H 4 HOH B 38 538 60 HOH HOH . H 4 HOH B 39 539 130 HOH HOH . H 4 HOH B 40 540 58 HOH HOH . H 4 HOH B 41 541 66 HOH HOH . H 4 HOH B 42 542 142 HOH HOH . H 4 HOH B 43 543 100 HOH HOH . H 4 HOH B 44 544 34 HOH HOH . H 4 HOH B 45 545 159 HOH HOH . H 4 HOH B 46 546 9 HOH HOH . H 4 HOH B 47 547 170 HOH HOH . H 4 HOH B 48 548 226 HOH HOH . H 4 HOH B 49 549 68 HOH HOH . H 4 HOH B 50 550 96 HOH HOH . H 4 HOH B 51 551 95 HOH HOH . H 4 HOH B 52 552 93 HOH HOH . H 4 HOH B 53 553 86 HOH HOH . H 4 HOH B 54 554 25 HOH HOH . H 4 HOH B 55 555 87 HOH HOH . H 4 HOH B 56 556 90 HOH HOH . H 4 HOH B 57 557 199 HOH HOH . H 4 HOH B 58 558 197 HOH HOH . H 4 HOH B 59 559 103 HOH HOH . H 4 HOH B 60 560 77 HOH HOH . H 4 HOH B 61 561 189 HOH HOH . H 4 HOH B 62 562 158 HOH HOH . H 4 HOH B 63 563 107 HOH HOH . H 4 HOH B 64 564 7 HOH HOH . H 4 HOH B 65 565 71 HOH HOH . H 4 HOH B 66 566 2 HOH HOH . H 4 HOH B 67 567 123 HOH HOH . H 4 HOH B 68 568 29 HOH HOH . H 4 HOH B 69 569 188 HOH HOH . H 4 HOH B 70 570 179 HOH HOH . H 4 HOH B 71 571 124 HOH HOH . H 4 HOH B 72 572 200 HOH HOH . H 4 HOH B 73 573 131 HOH HOH . H 4 HOH B 74 574 216 HOH HOH . H 4 HOH B 75 575 167 HOH HOH . H 4 HOH B 76 576 204 HOH HOH . H 4 HOH B 77 577 35 HOH HOH . H 4 HOH B 78 578 40 HOH HOH . H 4 HOH B 79 579 228 HOH HOH . H 4 HOH B 80 580 65 HOH HOH . H 4 HOH B 81 581 57 HOH HOH . H 4 HOH B 82 582 91 HOH HOH . H 4 HOH B 83 583 219 HOH HOH . H 4 HOH B 84 584 221 HOH HOH . H 4 HOH B 85 585 138 HOH HOH . H 4 HOH B 86 586 220 HOH HOH . H 4 HOH B 87 587 177 HOH HOH . H 4 HOH B 88 588 72 HOH HOH . H 4 HOH B 89 589 137 HOH HOH . H 4 HOH B 90 590 198 HOH HOH . H 4 HOH B 91 591 209 HOH HOH . H 4 HOH B 92 592 133 HOH HOH . H 4 HOH B 93 593 106 HOH HOH . H 4 HOH B 94 594 210 HOH HOH . H 4 HOH B 95 595 110 HOH HOH . H 4 HOH B 96 596 81 HOH HOH . H 4 HOH B 97 597 148 HOH HOH . H 4 HOH B 98 598 178 HOH HOH . H 4 HOH B 99 599 48 HOH HOH . H 4 HOH B 100 600 163 HOH HOH . H 4 HOH B 101 601 53 HOH HOH . H 4 HOH B 102 602 85 HOH HOH . H 4 HOH B 103 603 157 HOH HOH . H 4 HOH B 104 604 176 HOH HOH . I 4 HOH A 1 501 208 HOH HOH . I 4 HOH A 2 502 212 HOH HOH . I 4 HOH A 3 503 109 HOH HOH . I 4 HOH A 4 504 156 HOH HOH . I 4 HOH A 5 505 135 HOH HOH . I 4 HOH A 6 506 10 HOH HOH . I 4 HOH A 7 507 223 HOH HOH . I 4 HOH A 8 508 187 HOH HOH . I 4 HOH A 9 509 54 HOH HOH . I 4 HOH A 10 510 11 HOH HOH . I 4 HOH A 11 511 112 HOH HOH . I 4 HOH A 12 512 69 HOH HOH . I 4 HOH A 13 513 149 HOH HOH . I 4 HOH A 14 514 49 HOH HOH . I 4 HOH A 15 515 129 HOH HOH . I 4 HOH A 16 516 56 HOH HOH . I 4 HOH A 17 517 166 HOH HOH . I 4 HOH A 18 518 39 HOH HOH . I 4 HOH A 19 519 120 HOH HOH . I 4 HOH A 20 520 38 HOH HOH . I 4 HOH A 21 521 79 HOH HOH . I 4 HOH A 22 522 6 HOH HOH . I 4 HOH A 23 523 36 HOH HOH . I 4 HOH A 24 524 161 HOH HOH . I 4 HOH A 25 525 46 HOH HOH . I 4 HOH A 26 526 59 HOH HOH . I 4 HOH A 27 527 125 HOH HOH . I 4 HOH A 28 528 37 HOH HOH . I 4 HOH A 29 529 147 HOH HOH . I 4 HOH A 30 530 47 HOH HOH . I 4 HOH A 31 531 70 HOH HOH . I 4 HOH A 32 532 108 HOH HOH . I 4 HOH A 33 533 12 HOH HOH . I 4 HOH A 34 534 190 HOH HOH . I 4 HOH A 35 535 229 HOH HOH . I 4 HOH A 36 536 98 HOH HOH . I 4 HOH A 37 537 175 HOH HOH . I 4 HOH A 38 538 128 HOH HOH . I 4 HOH A 39 539 43 HOH HOH . I 4 HOH A 40 540 62 HOH HOH . I 4 HOH A 41 541 84 HOH HOH . I 4 HOH A 42 542 203 HOH HOH . I 4 HOH A 43 543 181 HOH HOH . I 4 HOH A 44 544 63 HOH HOH . I 4 HOH A 45 545 97 HOH HOH . I 4 HOH A 46 546 16 HOH HOH . I 4 HOH A 47 547 164 HOH HOH . I 4 HOH A 48 548 172 HOH HOH . I 4 HOH A 49 549 88 HOH HOH . I 4 HOH A 50 550 206 HOH HOH . I 4 HOH A 51 551 224 HOH HOH . I 4 HOH A 52 552 23 HOH HOH . I 4 HOH A 53 553 94 HOH HOH . I 4 HOH A 54 554 17 HOH HOH . I 4 HOH A 55 555 115 HOH HOH . I 4 HOH A 56 556 32 HOH HOH . I 4 HOH A 57 557 52 HOH HOH . I 4 HOH A 58 558 26 HOH HOH . I 4 HOH A 59 559 73 HOH HOH . I 4 HOH A 60 560 4 HOH HOH . I 4 HOH A 61 561 5 HOH HOH . I 4 HOH A 62 562 114 HOH HOH . I 4 HOH A 63 563 160 HOH HOH . I 4 HOH A 64 564 27 HOH HOH . I 4 HOH A 65 565 76 HOH HOH . I 4 HOH A 66 566 74 HOH HOH . I 4 HOH A 67 567 119 HOH HOH . I 4 HOH A 68 568 33 HOH HOH . I 4 HOH A 69 569 44 HOH HOH . I 4 HOH A 70 570 173 HOH HOH . I 4 HOH A 71 571 143 HOH HOH . I 4 HOH A 72 572 118 HOH HOH . I 4 HOH A 73 573 30 HOH HOH . I 4 HOH A 74 574 225 HOH HOH . I 4 HOH A 75 575 151 HOH HOH . I 4 HOH A 76 576 196 HOH HOH . I 4 HOH A 77 577 192 HOH HOH . I 4 HOH A 78 578 51 HOH HOH . I 4 HOH A 79 579 194 HOH HOH . I 4 HOH A 80 580 154 HOH HOH . I 4 HOH A 81 581 211 HOH HOH . I 4 HOH A 82 582 201 HOH HOH . I 4 HOH A 83 583 191 HOH HOH . I 4 HOH A 84 584 121 HOH HOH . I 4 HOH A 85 585 222 HOH HOH . I 4 HOH A 86 586 171 HOH HOH . I 4 HOH A 87 587 105 HOH HOH . I 4 HOH A 88 588 174 HOH HOH . I 4 HOH A 89 589 136 HOH HOH . I 4 HOH A 90 590 117 HOH HOH . I 4 HOH A 91 591 214 HOH HOH . I 4 HOH A 92 592 162 HOH HOH . I 4 HOH A 93 593 19 HOH HOH . I 4 HOH A 94 594 113 HOH HOH . I 4 HOH A 95 595 31 HOH HOH . I 4 HOH A 96 596 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VYN . . . F 2 42.4 14.326 42.709 1 34.44 ? N1 VYN 401 A 1 HETATM 2 C C2 VYN . . . F 2 37.376 19.822 55.441 1 42.97 ? C2 VYN 401 A 1 HETATM 3 N N3 VYN . . . F 2 42.428 15.801 47.093 1 37.5 ? N3 VYN 401 A 1 HETATM 4 C C4 VYN . . . F 2 36.877 19.264 53.177 1 45.06 ? C4 VYN 401 A 1 HETATM 5 C C5 VYN . . . F 2 38.184 18.812 53.043 1 41.85 ? C5 VYN 401 A 1 HETATM 6 C C6 VYN . . . F 2 38.696 18.271 51.758 1 36.3 ? C6 VYN 401 A 1 HETATM 7 C C8 VYN . . . F 2 40.067 18.498 49.781 1 40.57 ? C8 VYN 401 A 1 HETATM 8 C C24 VYN . . . F 2 38.905 16.452 50.195 1 41.75 ? C24 VYN 401 A 1 HETATM 9 CL CL VYN . . . F 2 38.453 14.837 49.747 1 42.03 ? CL VYN 401 A 1 HETATM 10 C C25 VYN . . . F 2 38.378 16.973 51.361 1 32.51 ? C25 VYN 401 A 1 HETATM 11 C C3 VYN . . . F 2 36.477 19.783 54.394 1 43.45 ? C3 VYN 401 A 1 HETATM 12 N N5 VYN . . . F 2 39.072 18.84 54.06 1 41.22 ? N5 VYN 401 A 1 HETATM 13 C C1 VYN . . . F 2 38.665 19.332 55.248 1 46.4 ? C1 VYN 401 A 1 HETATM 14 C C VYN . . . F 2 39.663 19.291 56.368 1 45.25 ? C VYN 401 A 1 HETATM 15 C C9 VYN . . . F 2 39.766 17.191 49.391 1 37.38 ? C9 VYN 401 A 1 HETATM 16 C C7 VYN . . . F 2 39.539 19.022 50.947 1 38.28 ? C7 VYN 401 A 1 HETATM 17 C C10 VYN . . . F 2 40.412 16.632 48.175 1 32.26 ? C10 VYN 401 A 1 HETATM 18 C C23 VYN . . . F 2 41.828 16.277 48.251 1 35.95 ? C23 VYN 401 A 1 HETATM 19 O O2 VYN . . . F 2 42.494 16.363 49.269 1 36.98 ? O2 VYN 401 A 1 HETATM 20 C C19 VYN . . . F 2 43.868 15.541 47.158 1 36.12 ? C19 VYN 401 A 1 HETATM 21 C C20 VYN . . . F 2 44.706 16.666 46.554 1 39.36 ? C20 VYN 401 A 1 HETATM 22 C C21 VYN . . . F 2 44.74 17.917 47.446 1 41.22 ? C21 VYN 401 A 1 HETATM 23 C C22 VYN . . . F 2 45.606 19.022 46.865 1 41.23 ? C22 VYN 401 A 1 HETATM 24 N N4 VYN . . . F 2 45.518 20.279 47.639 1 39.01 ? N4 VYN 401 A 1 HETATM 25 C C18 VYN . . . F 2 41.744 15.619 45.904 1 34.33 ? C18 VYN 401 A 1 HETATM 26 C C12 VYN . . . F 2 40.375 15.941 45.834 1 35.8 ? C12 VYN 401 A 1 HETATM 27 C C11 VYN . . . F 2 39.742 16.469 47.011 1 33.18 ? C11 VYN 401 A 1 HETATM 28 N N2 VYN . . . F 2 42.433 15.128 44.867 1 35.57 ? N2 VYN 401 A 1 HETATM 29 C C14 VYN . . . F 2 41.737 14.929 43.74 1 36.49 ? C14 VYN 401 A 1 HETATM 30 N N VYN . . . F 2 40.433 15.181 43.551 1 38.87 ? N VYN 401 A 1 HETATM 31 C C13 VYN . . . F 2 39.769 15.688 44.599 1 38.99 ? C13 VYN 401 A 1 HETATM 32 C C15 VYN . . . F 2 43.604 14.841 42.067 1 53.27 ? C15 VYN 401 A 1 HETATM 33 C C17 VYN . . . F 2 44.016 13.85 40.988 1 51.26 ? C17 VYN 401 A 1 HETATM 34 O O1 VYN . . . F 2 44.187 12.564 41.567 1 62.7 ? O1 VYN 401 A 1 HETATM 35 C C16 VYN . . . F 2 44.765 14.871 43.044 1 56.17 ? C16 VYN 401 A 1 HETATM 36 O O VYN . . . F 2 45.838 15.623 42.504 1 48.86 ? O VYN 401 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 36 #