data_8QM4 # _model_server_result.job_id O_7vtYo6AYQ-4wFs5ZSxAQ _model_server_result.datetime_utc '2025-01-24 20:46:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qm4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 8QM4 # _exptl.entry_id 8QM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.207 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-phenylphenol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.92 _cell.angle_gamma 90 _cell.entry_id 8QM4 _cell.length_a 47.152 _cell.length_b 69.427 _cell.length_c 63.818 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # _chem_comp.formula 'C12 H10 O' _chem_comp.formula_weight 170.207 _chem_comp.id W5B _chem_comp.mon_nstd_flag . _chem_comp.name 3-phenylphenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C11 W5B doub 408 n y C12 C13 W5B sing 409 n y C11 C10 W5B sing 410 n y C13 C8 W5B doub 411 n y C10 C9 W5B doub 412 n y C8 C9 W5B sing 413 n y C8 C6 W5B sing 414 n n C7 C6 W5B doub 415 n y C7 C2 W5B sing 416 n y C6 C5 W5B sing 417 n y O1 C2 W5B sing 418 n n C2 C3 W5B doub 419 n y C5 C4 W5B doub 420 n y C3 C4 W5B sing 421 n y C3 H15 W5B sing 422 n n C5 H17 W5B sing 423 n n C7 H18 W5B sing 424 n n C10 H20 W5B sing 425 n n C11 H21 W5B sing 426 n n C12 H22 W5B sing 427 n n C13 H23 W5B sing 428 n n O1 H14 W5B sing 429 n n C4 H16 W5B sing 430 n n C9 H19 W5B sing 431 n n # _atom_sites.entry_id 8QM4 _atom_sites.fract_transf_matrix[1][1] 0.021208 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002199 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015754 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 301 301 DMS DMS . D 3 PGE A 1 302 401 PGE PGE . E 3 PGE A 1 303 401 PGE PGE . F 4 W5B A 1 304 1 W5B L01 . G 2 DMS B 1 301 301 DMS DMS . H 4 W5B B 1 302 1 W5B L02 . I 5 HOH A 1 401 121 HOH HOH . I 5 HOH A 2 402 37 HOH HOH . I 5 HOH A 3 403 312 HOH HOH . I 5 HOH A 4 404 386 HOH HOH . I 5 HOH A 5 405 118 HOH HOH . I 5 HOH A 6 406 80 HOH HOH . I 5 HOH A 7 407 232 HOH HOH . I 5 HOH A 8 408 311 HOH HOH . I 5 HOH A 9 409 117 HOH HOH . I 5 HOH A 10 410 39 HOH HOH . I 5 HOH A 11 411 411 HOH HOH . I 5 HOH A 12 412 336 HOH HOH . I 5 HOH A 13 413 316 HOH HOH . I 5 HOH A 14 414 35 HOH HOH . I 5 HOH A 15 415 322 HOH HOH . I 5 HOH A 16 416 1 HOH HOH . I 5 HOH A 17 417 122 HOH HOH . I 5 HOH A 18 418 112 HOH HOH . I 5 HOH A 19 419 45 HOH HOH . I 5 HOH A 20 420 61 HOH HOH . I 5 HOH A 21 421 7 HOH HOH . I 5 HOH A 22 422 334 HOH HOH . I 5 HOH A 23 423 418 HOH HOH . I 5 HOH A 24 424 29 HOH HOH . I 5 HOH A 25 425 4 HOH HOH . I 5 HOH A 26 426 12 HOH HOH . I 5 HOH A 27 427 310 HOH HOH . I 5 HOH A 28 428 130 HOH HOH . I 5 HOH A 29 429 362 HOH HOH . I 5 HOH A 30 430 341 HOH HOH . I 5 HOH A 31 431 116 HOH HOH . I 5 HOH A 32 432 114 HOH HOH . I 5 HOH A 33 433 363 HOH HOH . I 5 HOH A 34 434 34 HOH HOH . I 5 HOH A 35 435 385 HOH HOH . I 5 HOH A 36 436 41 HOH HOH . I 5 HOH A 37 437 23 HOH HOH . I 5 HOH A 38 438 3 HOH HOH . I 5 HOH A 39 439 48 HOH HOH . I 5 HOH A 40 440 405 HOH HOH . I 5 HOH A 41 441 17 HOH HOH . I 5 HOH A 42 442 313 HOH HOH . I 5 HOH A 43 443 33 HOH HOH . I 5 HOH A 44 444 379 HOH HOH . I 5 HOH A 45 445 395 HOH HOH . I 5 HOH A 46 446 412 HOH HOH . I 5 HOH A 47 447 88 HOH HOH . I 5 HOH A 48 448 417 HOH HOH . I 5 HOH A 49 449 71 HOH HOH . I 5 HOH A 50 450 376 HOH HOH . I 5 HOH A 51 451 261 HOH HOH . I 5 HOH A 52 452 60 HOH HOH . I 5 HOH A 53 453 21 HOH HOH . I 5 HOH A 54 454 375 HOH HOH . I 5 HOH A 55 455 19 HOH HOH . I 5 HOH A 56 456 408 HOH HOH . I 5 HOH A 57 457 36 HOH HOH . I 5 HOH A 58 458 355 HOH HOH . I 5 HOH A 59 459 364 HOH HOH . I 5 HOH A 60 460 419 HOH HOH . I 5 HOH A 61 461 205 HOH HOH . I 5 HOH A 62 462 398 HOH HOH . I 5 HOH A 63 463 413 HOH HOH . I 5 HOH A 64 464 378 HOH HOH . I 5 HOH A 65 465 360 HOH HOH . I 5 HOH A 66 466 414 HOH HOH . I 5 HOH A 67 467 350 HOH HOH . I 5 HOH A 68 468 135 HOH HOH . I 5 HOH A 69 469 220 HOH HOH . I 5 HOH A 70 470 235 HOH HOH . I 5 HOH A 71 471 390 HOH HOH . J 5 HOH B 1 401 387 HOH HOH . J 5 HOH B 2 402 20 HOH HOH . J 5 HOH B 3 403 89 HOH HOH . J 5 HOH B 4 404 72 HOH HOH . J 5 HOH B 5 405 177 HOH HOH . J 5 HOH B 6 406 318 HOH HOH . J 5 HOH B 7 407 38 HOH HOH . J 5 HOH B 8 408 352 HOH HOH . J 5 HOH B 9 409 410 HOH HOH . J 5 HOH B 10 410 406 HOH HOH . J 5 HOH B 11 411 369 HOH HOH . J 5 HOH B 12 412 10 HOH HOH . J 5 HOH B 13 413 382 HOH HOH . J 5 HOH B 14 414 315 HOH HOH . J 5 HOH B 15 415 407 HOH HOH . J 5 HOH B 16 416 40 HOH HOH . J 5 HOH B 17 417 366 HOH HOH . J 5 HOH B 18 418 123 HOH HOH . J 5 HOH B 19 419 340 HOH HOH . J 5 HOH B 20 420 2 HOH HOH . J 5 HOH B 21 421 105 HOH HOH . J 5 HOH B 22 422 26 HOH HOH . J 5 HOH B 23 423 6 HOH HOH . J 5 HOH B 24 424 325 HOH HOH . J 5 HOH B 25 425 14 HOH HOH . J 5 HOH B 26 426 32 HOH HOH . J 5 HOH B 27 427 82 HOH HOH . J 5 HOH B 28 428 15 HOH HOH . J 5 HOH B 29 429 182 HOH HOH . J 5 HOH B 30 430 59 HOH HOH . J 5 HOH B 31 431 79 HOH HOH . J 5 HOH B 32 432 93 HOH HOH . J 5 HOH B 33 433 337 HOH HOH . J 5 HOH B 34 434 94 HOH HOH . J 5 HOH B 35 435 54 HOH HOH . J 5 HOH B 36 436 409 HOH HOH . J 5 HOH B 37 437 28 HOH HOH . J 5 HOH B 38 438 9 HOH HOH . J 5 HOH B 39 439 370 HOH HOH . J 5 HOH B 40 440 391 HOH HOH . J 5 HOH B 41 441 92 HOH HOH . J 5 HOH B 42 442 30 HOH HOH . J 5 HOH B 43 443 356 HOH HOH . J 5 HOH B 44 444 374 HOH HOH . J 5 HOH B 45 445 367 HOH HOH . J 5 HOH B 46 446 346 HOH HOH . J 5 HOH B 47 447 415 HOH HOH . J 5 HOH B 48 448 383 HOH HOH . J 5 HOH B 49 449 416 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 W5B . . . F 4 18.241 -4.353 9.362 0.44 28.47 ? C2 W5B 304 A 1 HETATM 2 C C3 W5B . . . F 4 19.15 -4.963 10.189 0.44 28.57 ? C3 W5B 304 A 1 HETATM 3 C C5 W5B . . . F 4 18.104 -7.055 9.808 0.44 23.42 ? C5 W5B 304 A 1 HETATM 4 C C6 W5B . . . F 4 17.136 -6.462 9.021 0.44 25.97 ? C6 W5B 304 A 1 HETATM 5 C C7 W5B . . . F 4 17.212 -5.087 8.801 0.44 27.78 ? C7 W5B 304 A 1 HETATM 6 C C8 W5B . . . F 4 16.05 -7.276 8.422 0.44 27.08 ? C8 W5B 304 A 1 HETATM 7 C C10 W5B . . . F 4 13.73 -7.566 7.887 0.44 27.66 ? C10 W5B 304 A 1 HETATM 8 C C11 W5B . . . F 4 14.012 -8.774 7.296 0.44 27.66 ? C11 W5B 304 A 1 HETATM 9 C C12 W5B . . . F 4 15.306 -9.242 7.268 0.44 27.25 ? C12 W5B 304 A 1 HETATM 10 C C13 W5B . . . F 4 16.318 -8.502 7.828 0.44 26.8 ? C13 W5B 304 A 1 HETATM 11 O O1 W5B . . . F 4 18.298 -3.022 9.188 0.44 32.8 ? O1 W5B 304 A 1 HETATM 12 C C4 W5B . . . F 4 19.095 -6.318 10.378 0.44 27.53 ? C4 W5B 304 A 1 HETATM 13 C C9 W5B . . . F 4 14.737 -6.831 8.452 0.44 28.09 ? C9 W5B 304 A 1 HETATM 14 H H15 W5B . . . F 4 19.868 -4.458 10.565 0.44 28.56 ? H15 W5B 304 A 1 HETATM 15 H H17 W5B . . . F 4 18.068 -7.994 9.97 0.44 23.42 ? H17 W5B 304 A 1 HETATM 16 H H18 W5B . . . F 4 16.555 -4.652 8.26 0.44 27.75 ? H18 W5B 304 A 1 HETATM 17 H H20 W5B . . . F 4 12.831 -7.247 7.917 0.44 27.66 ? H20 W5B 304 A 1 HETATM 18 H H21 W5B . . . F 4 13.309 -9.292 6.909 0.44 27.68 ? H21 W5B 304 A 1 HETATM 19 H H22 W5B . . . F 4 15.502 -10.077 6.849 0.44 27.27 ? H22 W5B 304 A 1 HETATM 20 H H23 W5B . . . F 4 17.215 -8.826 7.795 0.44 26.77 ? H23 W5B 304 A 1 HETATM 21 H H14 W5B . . . F 4 18.473 -2.679 9.93 0.44 32.86 ? H14 W5B 304 A 1 HETATM 22 H H16 W5B . . . F 4 19.75 -6.745 10.908 0.44 27.54 ? H16 W5B 304 A 1 HETATM 23 H H19 W5B . . . F 4 14.537 -6.001 8.868 0.44 28.13 ? H19 W5B 304 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #