data_8QM7 # _model_server_result.job_id RdSpkF5PAEVzoVsgys6CIA _model_server_result.datetime_utc '2025-01-24 21:09:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qm7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 8QM7 # _exptl.entry_id 8QM7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.67 _cell.angle_gamma 90 _cell.entry_id 8QM7 _cell.length_a 47.157 _cell.length_b 69.122 _cell.length_c 64.435 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QM7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 8QM7 _atom_sites.fract_transf_matrix[1][1] 0.021206 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002105 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 301 301 DMS DMS . D 2 DMS A 1 302 401 DMS DMS . E 3 PGE A 1 303 501 PGE PGE . F 4 W5K A 1 304 1 W5K L01 . G 2 DMS B 1 401 401 DMS DMS . H 5 PEG B 1 402 208 PEG PEG . I 4 W5K B 1 403 1 W5K L02 . J 6 HOH A 1 401 187 HOH HOH . J 6 HOH A 2 402 220 HOH HOH . J 6 HOH A 3 403 79 HOH HOH . J 6 HOH A 4 404 161 HOH HOH . J 6 HOH A 5 405 138 HOH HOH . J 6 HOH A 6 406 170 HOH HOH . J 6 HOH A 7 407 56 HOH HOH . J 6 HOH A 8 408 12 HOH HOH . J 6 HOH A 9 409 2 HOH HOH . J 6 HOH A 10 410 121 HOH HOH . J 6 HOH A 11 411 63 HOH HOH . J 6 HOH A 12 412 4 HOH HOH . J 6 HOH A 13 413 156 HOH HOH . J 6 HOH A 14 414 6 HOH HOH . J 6 HOH A 15 415 55 HOH HOH . J 6 HOH A 16 416 23 HOH HOH . J 6 HOH A 17 417 44 HOH HOH . J 6 HOH A 18 418 186 HOH HOH . J 6 HOH A 19 419 10 HOH HOH . J 6 HOH A 20 420 181 HOH HOH . J 6 HOH A 21 421 102 HOH HOH . J 6 HOH A 22 422 139 HOH HOH . J 6 HOH A 23 423 201 HOH HOH . J 6 HOH A 24 424 179 HOH HOH . J 6 HOH A 25 425 42 HOH HOH . J 6 HOH A 26 426 85 HOH HOH . J 6 HOH A 27 427 11 HOH HOH . J 6 HOH A 28 428 18 HOH HOH . J 6 HOH A 29 429 7 HOH HOH . J 6 HOH A 30 430 29 HOH HOH . J 6 HOH A 31 431 46 HOH HOH . J 6 HOH A 32 432 153 HOH HOH . J 6 HOH A 33 433 174 HOH HOH . J 6 HOH A 34 434 59 HOH HOH . J 6 HOH A 35 435 52 HOH HOH . J 6 HOH A 36 436 81 HOH HOH . J 6 HOH A 37 437 3 HOH HOH . J 6 HOH A 38 438 131 HOH HOH . J 6 HOH A 39 439 9 HOH HOH . J 6 HOH A 40 440 45 HOH HOH . J 6 HOH A 41 441 8 HOH HOH . J 6 HOH A 42 442 203 HOH HOH . J 6 HOH A 43 443 130 HOH HOH . J 6 HOH A 44 444 200 HOH HOH . J 6 HOH A 45 445 152 HOH HOH . J 6 HOH A 46 446 16 HOH HOH . J 6 HOH A 47 447 105 HOH HOH . J 6 HOH A 48 448 24 HOH HOH . J 6 HOH A 49 449 49 HOH HOH . J 6 HOH A 50 450 169 HOH HOH . J 6 HOH A 51 451 70 HOH HOH . J 6 HOH A 52 452 61 HOH HOH . J 6 HOH A 53 453 17 HOH HOH . J 6 HOH A 54 454 50 HOH HOH . J 6 HOH A 55 455 123 HOH HOH . J 6 HOH A 56 456 6 HOH HOH . J 6 HOH A 57 457 111 HOH HOH . J 6 HOH A 58 458 73 HOH HOH . J 6 HOH A 59 459 31 HOH HOH . J 6 HOH A 60 460 25 HOH HOH . J 6 HOH A 61 461 33 HOH HOH . J 6 HOH A 62 462 206 HOH HOH . J 6 HOH A 63 463 175 HOH HOH . J 6 HOH A 64 464 20 HOH HOH . J 6 HOH A 65 465 94 HOH HOH . J 6 HOH A 66 466 221 HOH HOH . J 6 HOH A 67 467 127 HOH HOH . J 6 HOH A 68 468 119 HOH HOH . J 6 HOH A 69 469 38 HOH HOH . J 6 HOH A 70 470 191 HOH HOH . J 6 HOH A 71 471 64 HOH HOH . J 6 HOH A 72 472 47 HOH HOH . J 6 HOH A 73 473 67 HOH HOH . J 6 HOH A 74 474 103 HOH HOH . J 6 HOH A 75 475 51 HOH HOH . J 6 HOH A 76 476 26 HOH HOH . J 6 HOH A 77 477 15 HOH HOH . J 6 HOH A 78 478 69 HOH HOH . J 6 HOH A 79 479 171 HOH HOH . J 6 HOH A 80 480 93 HOH HOH . J 6 HOH A 81 481 71 HOH HOH . J 6 HOH A 82 482 98 HOH HOH . J 6 HOH A 83 483 167 HOH HOH . J 6 HOH A 84 484 116 HOH HOH . J 6 HOH A 85 485 154 HOH HOH . J 6 HOH A 86 486 65 HOH HOH . J 6 HOH A 87 487 145 HOH HOH . J 6 HOH A 88 488 100 HOH HOH . J 6 HOH A 89 489 132 HOH HOH . J 6 HOH A 90 490 135 HOH HOH . J 6 HOH A 91 491 140 HOH HOH . J 6 HOH A 92 492 114 HOH HOH . J 6 HOH A 93 493 96 HOH HOH . J 6 HOH A 94 494 226 HOH HOH . J 6 HOH A 95 495 113 HOH HOH . J 6 HOH A 96 496 91 HOH HOH . J 6 HOH A 97 497 223 HOH HOH . J 6 HOH A 98 498 68 HOH HOH . J 6 HOH A 99 499 104 HOH HOH . J 6 HOH A 100 500 183 HOH HOH . J 6 HOH A 101 501 90 HOH HOH . J 6 HOH A 102 502 160 HOH HOH . J 6 HOH A 103 503 84 HOH HOH . J 6 HOH A 104 504 192 HOH HOH . J 6 HOH A 105 505 57 HOH HOH . J 6 HOH A 106 506 133 HOH HOH . J 6 HOH A 107 507 224 HOH HOH . J 6 HOH A 108 508 137 HOH HOH . J 6 HOH A 109 509 218 HOH HOH . J 6 HOH A 110 510 225 HOH HOH . J 6 HOH A 111 511 120 HOH HOH . J 6 HOH A 112 512 106 HOH HOH . J 6 HOH A 113 513 157 HOH HOH . J 6 HOH A 114 514 193 HOH HOH . K 6 HOH B 1 501 34 HOH HOH . K 6 HOH B 2 502 37 HOH HOH . K 6 HOH B 3 503 125 HOH HOH . K 6 HOH B 4 504 178 HOH HOH . K 6 HOH B 5 505 107 HOH HOH . K 6 HOH B 6 506 13 HOH HOH . K 6 HOH B 7 507 76 HOH HOH . K 6 HOH B 8 508 109 HOH HOH . K 6 HOH B 9 509 149 HOH HOH . K 6 HOH B 10 510 110 HOH HOH . K 6 HOH B 11 511 112 HOH HOH . K 6 HOH B 12 512 199 HOH HOH . K 6 HOH B 13 513 32 HOH HOH . K 6 HOH B 14 514 87 HOH HOH . K 6 HOH B 15 515 75 HOH HOH . K 6 HOH B 16 516 83 HOH HOH . K 6 HOH B 17 517 43 HOH HOH . K 6 HOH B 18 518 202 HOH HOH . K 6 HOH B 19 519 41 HOH HOH . K 6 HOH B 20 520 14 HOH HOH . K 6 HOH B 21 521 28 HOH HOH . K 6 HOH B 22 522 129 HOH HOH . K 6 HOH B 23 523 185 HOH HOH . K 6 HOH B 24 524 108 HOH HOH . K 6 HOH B 25 525 30 HOH HOH . K 6 HOH B 26 526 58 HOH HOH . K 6 HOH B 27 527 162 HOH HOH . K 6 HOH B 28 528 134 HOH HOH . K 6 HOH B 29 529 205 HOH HOH . K 6 HOH B 30 530 158 HOH HOH . K 6 HOH B 31 531 19 HOH HOH . K 6 HOH B 32 532 164 HOH HOH . K 6 HOH B 33 533 177 HOH HOH . K 6 HOH B 34 534 1 HOH HOH . K 6 HOH B 35 535 150 HOH HOH . K 6 HOH B 36 536 39 HOH HOH . K 6 HOH B 37 537 40 HOH HOH . K 6 HOH B 38 538 101 HOH HOH . K 6 HOH B 39 539 48 HOH HOH . K 6 HOH B 40 540 136 HOH HOH . K 6 HOH B 41 541 194 HOH HOH . K 6 HOH B 42 542 92 HOH HOH . K 6 HOH B 43 543 60 HOH HOH . K 6 HOH B 44 544 72 HOH HOH . K 6 HOH B 45 545 207 HOH HOH . K 6 HOH B 46 546 165 HOH HOH . K 6 HOH B 47 547 74 HOH HOH . K 6 HOH B 48 548 53 HOH HOH . K 6 HOH B 49 549 78 HOH HOH . K 6 HOH B 50 550 173 HOH HOH . K 6 HOH B 51 551 66 HOH HOH . K 6 HOH B 52 552 141 HOH HOH . K 6 HOH B 53 553 172 HOH HOH . K 6 HOH B 54 554 115 HOH HOH . K 6 HOH B 55 555 155 HOH HOH . K 6 HOH B 56 556 86 HOH HOH . K 6 HOH B 57 557 195 HOH HOH . K 6 HOH B 58 558 54 HOH HOH . K 6 HOH B 59 559 89 HOH HOH . K 6 HOH B 60 560 117 HOH HOH . K 6 HOH B 61 561 27 HOH HOH . K 6 HOH B 62 562 36 HOH HOH . K 6 HOH B 63 563 189 HOH HOH . K 6 HOH B 64 564 82 HOH HOH . K 6 HOH B 65 565 99 HOH HOH . K 6 HOH B 66 566 126 HOH HOH . K 6 HOH B 67 567 21 HOH HOH . K 6 HOH B 68 568 118 HOH HOH . K 6 HOH B 69 569 182 HOH HOH . K 6 HOH B 70 570 197 HOH HOH . K 6 HOH B 71 571 3 HOH HOH . K 6 HOH B 72 572 198 HOH HOH . K 6 HOH B 73 573 122 HOH HOH . K 6 HOH B 74 574 188 HOH HOH . K 6 HOH B 75 575 144 HOH HOH . K 6 HOH B 76 576 142 HOH HOH . K 6 HOH B 77 577 176 HOH HOH . K 6 HOH B 78 578 128 HOH HOH . K 6 HOH B 79 579 4 HOH HOH . K 6 HOH B 80 580 97 HOH HOH . K 6 HOH B 81 581 5 HOH HOH . K 6 HOH B 82 582 95 HOH HOH . K 6 HOH B 83 583 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 2 23.19 -2.963 -7.641 1 91.58 ? S DMS 302 A 1 HETATM 2 O O DMS . . . D 2 22.937 -1.494 -7.405 1 91.55 ? O DMS 302 A 1 HETATM 3 C C1 DMS . . . D 2 23.966 -3.576 -6.165 1 91.07 ? C1 DMS 302 A 1 HETATM 4 C C2 DMS . . . D 2 21.616 -3.755 -7.452 1 91.8 ? C2 DMS 302 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #