data_8QMO # _model_server_result.job_id 7wexYt1oRYYsjzl6fJEI_A _model_server_result.datetime_utc '2024-11-22 15:03:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qmo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":501}' # _entry.id 8QMO # _exptl.entry_id 8QMO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 252.309 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description benzo[a]pyrene _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QMO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QMO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 52 A ASN 46 1_555 G MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc2 E O1 MOO . A MOO 801 1_555 G MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc3 F O1B ADP . A ADP 802 1_555 G MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc4 F O1A ADP . A ADP 802 1_555 G MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc5 B OD1 ASN 52 B ASN 46 1_555 J MG MG . B MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc6 H O2 MOO . B MOO 801 1_555 J MG MG . B MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc7 I O3B ADP . B ADP 802 1_555 J MG MG . B MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc8 I O2A ADP . B ADP 802 1_555 J MG MG . B MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? # _chem_comp.formula 'C20 H12' _chem_comp.formula_weight 252.309 _chem_comp.id W62 _chem_comp.mon_nstd_flag . _chem_comp.name benzo[a]pyrene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C14 W62 doub 422 n y C13 C12 W62 sing 423 n y C14 C15 W62 sing 424 n y C12 C11 W62 doub 425 n y C15 C16 W62 doub 426 n y C15 C20 W62 sing 427 n y C16 C17 W62 sing 428 n y C11 C20 W62 sing 429 n y C11 C10 W62 sing 430 n y C20 C19 W62 doub 431 n y C10 C9 W62 doub 432 n y C17 C18 W62 doub 433 n y C19 C18 W62 sing 434 n y C19 C8 W62 sing 435 n y C18 C4 W62 sing 436 n y C9 C8 W62 sing 437 n y C8 C7 W62 doub 438 n y C4 C3 W62 doub 439 n y C4 C5 W62 sing 440 n y C3 C2 W62 sing 441 n y C7 C5 W62 sing 442 n y C5 C6 W62 doub 443 n y C2 C1 W62 doub 444 n y C6 C1 W62 sing 445 n y C6 H1 W62 sing 446 n n C7 H2 W62 sing 447 n n C10 H3 W62 sing 448 n n C13 H4 W62 sing 449 n n C17 H5 W62 sing 450 n n C1 H6 W62 sing 451 n n C12 H7 W62 sing 452 n n C14 H8 W62 sing 453 n n C16 H9 W62 sing 454 n n C2 H10 W62 sing 455 n n C3 H11 W62 sing 456 n n C9 H12 W62 sing 457 n n # _atom_sites.entry_id 8QMO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 MOO A 1 801 801 MOO MOO . F 5 ADP A 1 802 802 ADP ADP . G 6 MG A 1 803 803 MG MG . H 4 MOO B 1 801 801 MOO MOO . I 5 ADP B 1 802 802 ADP ADP . J 6 MG B 1 803 803 MG MG . K 7 W62 D 1 501 501 W62 W62 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 W62 . A . K 7 129.559 143.876 139.905 0.5 49.99 ? C4 W62 501 D 1 HETATM 2 C C4 W62 . B . K 7 130.735 144.09 140.625 0.5 50.52 ? C4 W62 501 D 1 HETATM 3 C C5 W62 . A . K 7 130.646 143.973 140.811 0.5 50.74 ? C5 W62 501 D 1 HETATM 4 C C5 W62 . B . K 7 129.441 143.512 140.57 0.5 50.07 ? C5 W62 501 D 1 HETATM 5 C C6 W62 . A . K 7 130.549 143.351 142.078 0.5 51.2 ? C6 W62 501 D 1 HETATM 6 C C6 W62 . B . K 7 128.961 142.785 141.685 0.5 51.29 ? C6 W62 501 D 1 HETATM 7 C C7 W62 . A . K 7 131.795 144.668 140.439 0.5 48.38 ? C7 W62 501 D 1 HETATM 8 C C7 W62 . B . K 7 128.664 143.666 139.425 0.5 50.13 ? C7 W62 501 D 1 HETATM 9 C C8 W62 . A . K 7 131.921 145.279 139.195 0.5 50.38 ? C8 W62 501 D 1 HETATM 10 C C8 W62 . B . K 7 129.112 144.376 138.314 0.5 50.63 ? C8 W62 501 D 1 HETATM 11 C C10 W62 . A . K 7 133.219 146.548 137.597 0.5 49.24 ? C10 W62 501 D 1 HETATM 12 C C10 W62 . B . K 7 128.766 145.209 136.07 0.5 50.73 ? C10 W62 501 D 1 HETATM 13 C C13 W62 . A . K 7 131.243 146.965 134.46 0.5 52.65 ? C13 W62 501 D 1 HETATM 14 C C13 W62 . B . K 7 131.801 147.077 134.967 0.5 51.91 ? C13 W62 501 D 1 HETATM 15 C C15 W62 . A . K 7 129.924 145.713 136.057 0.5 49.59 ? C15 W62 501 D 1 HETATM 16 C C15 W62 . B . K 7 132.156 146.262 137.22 0.5 50.73 ? C15 W62 501 D 1 HETATM 17 C C17 W62 . A . K 7 128.629 144.438 137.653 0.5 50.83 ? C17 W62 501 D 1 HETATM 18 C C17 W62 . B . K 7 132.502 145.427 139.463 0.5 48.78 ? C17 W62 501 D 1 HETATM 19 C C20 W62 . A . K 7 130.981 145.804 136.991 0.5 50.49 ? C20 W62 501 D 1 HETATM 20 C C20 W62 . B . K 7 130.867 145.682 137.205 0.5 50.87 ? C20 W62 501 D 1 HETATM 21 C C1 W62 . A . K 7 129.425 142.664 142.429 0.5 50.45 ? C1 W62 501 D 1 HETATM 22 C C1 W62 . B . K 7 129.729 142.641 142.803 0.5 49.61 ? C1 W62 501 D 1 HETATM 23 C C11 W62 . A . K 7 132.171 146.484 136.644 0.5 50.34 ? C11 W62 501 D 1 HETATM 24 C C11 W62 . B . K 7 130.051 145.808 136.057 0.5 49.6 ? C11 W62 501 D 1 HETATM 25 C C12 W62 . A . K 7 132.273 147.061 135.354 0.5 50.81 ? C12 W62 501 D 1 HETATM 26 C C12 W62 . B . K 7 130.553 146.52 134.94 0.5 52.21 ? C12 W62 501 D 1 HETATM 27 C C14 W62 . A . K 7 130.088 146.311 134.784 0.5 52.41 ? C14 W62 501 D 1 HETATM 28 C C14 W62 . B . K 7 132.6 146.962 136.071 0.5 49.95 ? C14 W62 501 D 1 HETATM 29 C C16 W62 . A . K 7 128.748 145.015 136.433 0.5 50.96 ? C16 W62 501 D 1 HETATM 30 C C16 W62 . B . K 7 132.952 146.112 138.384 0.5 49.82 ? C16 W62 501 D 1 HETATM 31 C C18 W62 . A . K 7 129.661 144.499 138.612 0.5 51.19 ? C18 W62 501 D 1 HETATM 32 C C18 W62 . B . K 7 131.225 144.83 139.489 0.5 50.76 ? C18 W62 501 D 1 HETATM 33 C C19 W62 . A . K 7 130.854 145.201 138.267 0.5 52.86 ? C19 W62 501 D 1 HETATM 34 C C19 W62 . B . K 7 130.399 144.966 138.335 0.5 52.62 ? C19 W62 501 D 1 HETATM 35 C C2 W62 . A . K 7 128.363 142.566 141.552 0.5 52.51 ? C2 W62 501 D 1 HETATM 36 C C2 W62 . B . K 7 130.989 143.202 142.863 0.5 49.77 ? C2 W62 501 D 1 HETATM 37 C C3 W62 . A . K 7 128.423 143.154 140.321 0.5 50.76 ? C3 W62 501 D 1 HETATM 38 C C3 W62 . B . K 7 131.485 143.91 141.804 0.5 51.11 ? C3 W62 501 D 1 HETATM 39 C C9 W62 . A . K 7 133.099 145.973 138.817 0.5 49.17 ? C9 W62 501 D 1 HETATM 40 C C9 W62 . B . K 7 128.317 144.524 137.148 0.5 51.43 ? C9 W62 501 D 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 40 #