data_8QMO
#
_model_server_result.job_id            xZ6wV6qEUGfnLYqna5dVHQ 
_model_server_result.datetime_utc      '2024-11-22 14:56:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8qmo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":802}' 
#
_entry.id    8QMO 
#
_exptl.entry_id    8QMO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8QMO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8QMO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 52 A ASN 46 1_555 G MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc2 E O1 MOO . A MOO 801 1_555 G MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc3 F O1B ADP . A ADP 802 1_555 G MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? 
metalc ? metalc4 F O1A ADP . A ADP 802 1_555 G MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc5 B OD1 ASN 52 B ASN 46 1_555 J MG MG . B MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc6 H O2 MOO . B MOO 801 1_555 J MG MG . B MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc7 I O3B ADP . B ADP 802 1_555 J MG MG . B MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc8 I O2A ADP . B ADP 802 1_555 J MG MG . B MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     8QMO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 MOO A 1 801 801 MOO MOO . 
F 5 ADP A 1 802 802 ADP ADP . 
G 6 MG A 1 803 803 MG MG . 
H 4 MOO B 1 801 801 MOO MOO . 
I 5 ADP B 1 802 802 ADP ADP . 
J 6 MG B 1 803 803 MG MG . 
K 7 W62 D 1 501 501 W62 W62 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . I 5 152.542 125.962 198.434 1 8.98 ? PB ADP 802 B 1 
HETATM 2 O O1B ADP . . . I 5 151.866 126.291 197.134 1 28.43 ? O1B ADP 802 B 1 
HETATM 3 O O2B ADP . . . I 5 151.649 126.085 199.638 1 9.82 ? O2B ADP 802 B 1 
HETATM 4 O O3B ADP . . . I 5 153.908 126.572 198.597 1 27.44 ? O3B ADP 802 B 1 
HETATM 5 P PA ADP . . . I 5 154.216 123.669 198.099 1 8.17 ? PA ADP 802 B 1 
HETATM 6 O O1A ADP . . . I 5 154.285 123.075 196.721 1 30.84 ? O1A ADP 802 B 1 
HETATM 7 O O2A ADP . . . I 5 155.319 124.559 198.596 1 22.92 ? O2A ADP 802 B 1 
HETATM 8 O O3A ADP . . . I 5 152.791 124.381 198.329 1 15.21 ? O3A ADP 802 B 1 
HETATM 9 O O5' ADP . . . I 5 153.999 122.488 199.164 1 29.83 ? O5' ADP 802 B 1 
HETATM 10 C C5' ADP . . . I 5 154.999 122.145 200.11 1 22.91 ? C5' ADP 802 B 1 
HETATM 11 C C4' ADP . . . I 5 154.476 122.428 201.512 1 25.2 ? C4' ADP 802 B 1 
HETATM 12 O O4' ADP . . . I 5 155.533 122.222 202.448 1 33.65 ? O4' ADP 802 B 1 
HETATM 13 C C3' ADP . . . I 5 153.991 123.862 201.675 1 23.82 ? C3' ADP 802 B 1 
HETATM 14 O O3' ADP . . . I 5 152.568 123.929 201.792 1 36.01 ? O3' ADP 802 B 1 
HETATM 15 C C2' ADP . . . I 5 154.649 124.38 202.934 1 28.23 ? C2' ADP 802 B 1 
HETATM 16 O O2' ADP . . . I 5 153.688 124.553 203.978 1 28.1 ? O2' ADP 802 B 1 
HETATM 17 C C1' ADP . . . I 5 155.679 123.337 203.325 1 24.6 ? C1' ADP 802 B 1 
HETATM 18 N N9 ADP . . . I 5 157.034 123.914 203.168 1 17.02 ? N9 ADP 802 B 1 
HETATM 19 C C8 ADP . . . I 5 157.778 123.87 202.047 1 15.38 ? C8 ADP 802 B 1 
HETATM 20 N N7 ADP . . . I 5 158.966 124.492 202.231 1 8.03 ? N7 ADP 802 B 1 
HETATM 21 C C5 ADP . . . I 5 158.99 124.95 203.491 1 17.2 ? C5 ADP 802 B 1 
HETATM 22 C C6 ADP . . . I 5 159.946 125.696 204.332 1 20.06 ? C6 ADP 802 B 1 
HETATM 23 N N6 ADP . . . I 5 161.143 126.085 203.839 1 13.25 ? N6 ADP 802 B 1 
HETATM 24 N N1 ADP . . . I 5 159.584 125.974 205.602 1 22.71 ? N1 ADP 802 B 1 
HETATM 25 C C2 ADP . . . I 5 158.397 125.594 206.107 1 27.14 ? C2 ADP 802 B 1 
HETATM 26 N N3 ADP . . . I 5 157.484 124.914 205.394 1 26.15 ? N3 ADP 802 B 1 
HETATM 27 C C4 ADP . . . I 5 157.715 124.567 204.107 1 19.99 ? C4 ADP 802 B 1 
HETATM 28 H "H5'1" ADP . . . I 5 155.903 122.722 199.917 1 23.96 ? "H5'1" ADP 802 B 1 
HETATM 29 H "H5'2" ADP . . . I 5 155.246 121.086 200.017 1 25.81 ? "H5'2" ADP 802 B 1 
HETATM 30 H H4' ADP . . . I 5 153.642 121.745 201.723 1 25.31 ? H4' ADP 802 B 1 
HETATM 31 H H3' ADP . . . I 5 154.332 124.461 200.821 1 24.07 ? H3' ADP 802 B 1 
HETATM 32 H HO3' ADP . . . I 5 152.286 124.854 201.757 1 24.89 ? HO3' ADP 802 B 1 
HETATM 33 H H2' ADP . . . I 5 155.157 125.33 202.716 1 25.36 ? H2' ADP 802 B 1 
HETATM 34 H HO2' ADP . . . I 5 153.116 125.305 203.773 1 24.86 ? HO2' ADP 802 B 1 
HETATM 35 H H1' ADP . . . I 5 155.51 123.032 204.368 1 24.36 ? H1' ADP 802 B 1 
HETATM 36 H H8 ADP . . . I 5 157.475 123.4 201.122 1 24.66 ? H8 ADP 802 B 1 
HETATM 37 H HN61 ADP . . . I 5 161.783 126.593 204.429 1 23.93 ? HN61 ADP 802 B 1 
HETATM 38 H HN62 ADP . . . I 5 161.395 125.866 202.886 1 22.46 ? HN62 ADP 802 B 1 
HETATM 39 H H2 ADP . . . I 5 158.167 125.85 207.134 1 24.5 ? H2 ADP 802 B 1 
#
_model_server_stats.io_time_ms              80 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           39 
#