data_8QNS # _model_server_result.job_id 21OcP9MIJk58K-X3cgtTbg _model_server_result.datetime_utc '2024-11-16 00:52:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qns # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":701}' # _entry.id 8QNS # _exptl.entry_id 8QNS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QNS _cell.length_a 110.087 _cell.length_b 115.619 _cell.length_c 192.727 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QNS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,J,Q,U 1 1 B,G,K,L,R 2 1 C,F,M,N,S,V 3 1 D,H,O,P,T 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 K N N ? 3 M N N ? 3 O N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 8QNS _atom_sites.fract_transf_matrix[1][1] 0.009084 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 FAD A 1 701 1611 FAD FAD . J 4 NAD A 1 702 700 NAD NAD . K 3 FAD D 1 701 1611 FAD FAD . L 4 NAD D 1 702 700 NAD NAD . M 3 FAD G 1 701 1611 FAD FAD . N 4 NAD G 1 702 700 NAD NAD . O 3 FAD J 1 701 1611 FAD FAD . P 4 NAD J 1 702 700 NAD NAD . Q 5 HOH A 1 801 160 HOH HOH . Q 5 HOH A 2 802 180 HOH HOH . Q 5 HOH A 3 803 30 HOH HOH . Q 5 HOH A 4 804 282 HOH HOH . Q 5 HOH A 5 805 123 HOH HOH . Q 5 HOH A 6 806 244 HOH HOH . Q 5 HOH A 7 807 110 HOH HOH . Q 5 HOH A 8 808 59 HOH HOH . Q 5 HOH A 9 809 121 HOH HOH . Q 5 HOH A 10 810 243 HOH HOH . Q 5 HOH A 11 811 4 HOH HOH . Q 5 HOH A 12 812 212 HOH HOH . Q 5 HOH A 13 813 102 HOH HOH . Q 5 HOH A 14 814 205 HOH HOH . Q 5 HOH A 15 815 185 HOH HOH . Q 5 HOH A 16 816 135 HOH HOH . Q 5 HOH A 17 817 80 HOH HOH . Q 5 HOH A 18 818 294 HOH HOH . Q 5 HOH A 19 819 153 HOH HOH . Q 5 HOH A 20 820 53 HOH HOH . Q 5 HOH A 21 821 3 HOH HOH . Q 5 HOH A 22 822 263 HOH HOH . Q 5 HOH A 23 823 155 HOH HOH . Q 5 HOH A 24 824 287 HOH HOH . Q 5 HOH A 25 825 158 HOH HOH . Q 5 HOH A 26 826 290 HOH HOH . R 5 HOH D 1 801 136 HOH HOH . R 5 HOH D 2 802 225 HOH HOH . R 5 HOH D 3 803 127 HOH HOH . R 5 HOH D 4 804 220 HOH HOH . R 5 HOH D 5 805 60 HOH HOH . R 5 HOH D 6 806 173 HOH HOH . R 5 HOH D 7 807 134 HOH HOH . R 5 HOH D 8 808 291 HOH HOH . R 5 HOH D 9 809 14 HOH HOH . R 5 HOH D 10 810 119 HOH HOH . R 5 HOH D 11 811 221 HOH HOH . R 5 HOH D 12 812 93 HOH HOH . R 5 HOH D 13 813 58 HOH HOH . R 5 HOH D 14 814 66 HOH HOH . R 5 HOH D 15 815 169 HOH HOH . R 5 HOH D 16 816 57 HOH HOH . R 5 HOH D 17 817 107 HOH HOH . R 5 HOH D 18 818 129 HOH HOH . R 5 HOH D 19 819 286 HOH HOH . R 5 HOH D 20 820 162 HOH HOH . S 5 HOH G 1 801 295 HOH HOH . S 5 HOH G 2 802 206 HOH HOH . S 5 HOH G 3 803 33 HOH HOH . S 5 HOH G 4 804 194 HOH HOH . S 5 HOH G 5 805 49 HOH HOH . S 5 HOH G 6 806 258 HOH HOH . S 5 HOH G 7 807 118 HOH HOH . S 5 HOH G 8 808 112 HOH HOH . S 5 HOH G 9 809 177 HOH HOH . S 5 HOH G 10 810 183 HOH HOH . S 5 HOH G 11 811 63 HOH HOH . S 5 HOH G 12 812 250 HOH HOH . S 5 HOH G 13 813 252 HOH HOH . S 5 HOH G 14 814 133 HOH HOH . S 5 HOH G 15 815 176 HOH HOH . S 5 HOH G 16 816 76 HOH HOH . S 5 HOH G 17 817 50 HOH HOH . S 5 HOH G 18 818 18 HOH HOH . S 5 HOH G 19 819 156 HOH HOH . S 5 HOH G 20 820 283 HOH HOH . S 5 HOH G 21 821 292 HOH HOH . T 5 HOH J 1 801 148 HOH HOH . T 5 HOH J 2 802 39 HOH HOH . T 5 HOH J 3 803 273 HOH HOH . T 5 HOH J 4 804 237 HOH HOH . T 5 HOH J 5 805 101 HOH HOH . T 5 HOH J 6 806 238 HOH HOH . T 5 HOH J 7 807 276 HOH HOH . T 5 HOH J 8 808 231 HOH HOH . T 5 HOH J 9 809 254 HOH HOH . T 5 HOH J 10 810 200 HOH HOH . T 5 HOH J 11 811 218 HOH HOH . T 5 HOH J 12 812 190 HOH HOH . T 5 HOH J 13 813 166 HOH HOH . T 5 HOH J 14 814 213 HOH HOH . U 5 HOH M 1 101 293 HOH HOH . U 5 HOH M 2 102 165 HOH HOH . U 5 HOH M 3 103 215 HOH HOH . V 5 HOH N 1 101 124 HOH HOH . V 5 HOH N 2 102 297 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . I 3 7.989 18.597 45.824 1 61.75 0 PA FAD 701 A 1 HETATM 2 O O1A FAD . . . I 3 8.772 19.761 45.347 1 61.75 0 O1A FAD 701 A 1 HETATM 3 O O2A FAD . . . I 3 6.991 18.804 46.906 1 61.75 0 O2A FAD 701 A 1 HETATM 4 O O5B FAD . . . I 3 8.957 17.365 46.148 1 61.75 0 O5B FAD 701 A 1 HETATM 5 C C5B FAD . . . I 3 10.111 17.147 45.285 1 61.75 0 C5B FAD 701 A 1 HETATM 6 C C4B FAD . . . I 3 11.238 16.563 46.108 1 61.75 0 C4B FAD 701 A 1 HETATM 7 O O4B FAD . . . I 3 12.149 15.812 45.269 1 61.75 0 O4B FAD 701 A 1 HETATM 8 C C3B FAD . . . I 3 12.124 17.588 46.817 1 61.75 0 C3B FAD 701 A 1 HETATM 9 O O3B FAD . . . I 3 12.576 17.014 48.036 1 61.75 0 O3B FAD 701 A 1 HETATM 10 C C2B FAD . . . I 3 13.252 17.759 45.799 1 61.75 0 C2B FAD 701 A 1 HETATM 11 O O2B FAD . . . I 3 14.401 18.364 46.343 1 61.75 0 O2B FAD 701 A 1 HETATM 12 C C1B FAD . . . I 3 13.476 16.291 45.454 1 61.75 0 C1B FAD 701 A 1 HETATM 13 N N9A FAD . . . I 3 14.241 16.014 44.239 1 61.75 0 N9A FAD 701 A 1 HETATM 14 C C8A FAD . . . I 3 14.138 16.671 43.043 1 61.75 0 C8A FAD 701 A 1 HETATM 15 N N7A FAD . . . I 3 14.932 16.203 42.109 1 61.75 0 N7A FAD 701 A 1 HETATM 16 C C5A FAD . . . I 3 15.597 15.151 42.724 1 61.75 0 C5A FAD 701 A 1 HETATM 17 C C6A FAD . . . I 3 16.571 14.242 42.251 1 61.75 0 C6A FAD 701 A 1 HETATM 18 N N6A FAD . . . I 3 17.072 14.232 41.011 1 61.75 0 N6A FAD 701 A 1 HETATM 19 N N1A FAD . . . I 3 17.016 13.317 43.128 1 61.75 0 N1A FAD 701 A 1 HETATM 20 C C2A FAD . . . I 3 16.52 13.327 44.375 1 61.75 0 C2A FAD 701 A 1 HETATM 21 N N3A FAD . . . I 3 15.607 14.123 44.927 1 61.75 0 N3A FAD 701 A 1 HETATM 22 C C4A FAD . . . I 3 15.175 15.029 44.038 1 61.75 0 C4A FAD 701 A 1 HETATM 23 N N1 FAD . . . I 3 -0.819 23.362 46.53 1 61.75 0 N1 FAD 701 A 1 HETATM 24 C C2 FAD . . . I 3 -2.159 23.358 46.788 1 61.75 0 C2 FAD 701 A 1 HETATM 25 O O2 FAD . . . I 3 -2.948 22.654 46.139 1 61.75 0 O2 FAD 701 A 1 HETATM 26 N N3 FAD . . . I 3 -2.63 24.131 47.846 1 61.75 0 N3 FAD 701 A 1 HETATM 27 C C4 FAD . . . I 3 -1.872 24.922 48.685 1 61.75 0 C4 FAD 701 A 1 HETATM 28 O O4 FAD . . . I 3 -2.377 25.561 49.588 1 61.75 0 O4 FAD 701 A 1 HETATM 29 C C4X FAD . . . I 3 -0.502 24.942 48.373 1 61.75 0 C4X FAD 701 A 1 HETATM 30 N N5 FAD . . . I 3 0.279 25.687 49.119 1 61.75 0 N5 FAD 701 A 1 HETATM 31 C C5X FAD . . . I 3 1.607 25.733 48.793 1 61.75 0 C5X FAD 701 A 1 HETATM 32 C C6 FAD . . . I 3 2.463 26.562 49.541 1 61.75 0 C6 FAD 701 A 1 HETATM 33 C C7 FAD . . . I 3 3.805 26.673 49.23 1 61.75 0 C7 FAD 701 A 1 HETATM 34 C C7M FAD . . . I 3 4.69 27.562 50.054 1 61.75 0 C7M FAD 701 A 1 HETATM 35 C C8 FAD . . . I 3 4.358 25.956 48.139 1 61.75 0 C8 FAD 701 A 1 HETATM 36 C C8M FAD . . . I 3 5.819 26.07 47.77 1 61.75 0 C8M FAD 701 A 1 HETATM 37 C C9 FAD . . . I 3 3.536 25.085 47.454 1 61.75 0 C9 FAD 701 A 1 HETATM 38 C C9A FAD . . . I 3 2.156 24.978 47.733 1 61.75 0 C9A FAD 701 A 1 HETATM 39 N N10 FAD . . . I 3 1.299 24.154 46.999 1 61.75 0 N10 FAD 701 A 1 HETATM 40 C C10 FAD . . . I 3 -0.051 24.126 47.274 1 61.75 0 C10 FAD 701 A 1 HETATM 41 C C1' FAD . . . I 3 1.811 23.307 45.9 1 61.75 0 C1' FAD 701 A 1 HETATM 42 C C2' FAD . . . I 3 2.203 21.918 46.38 1 61.75 0 C2' FAD 701 A 1 HETATM 43 O O2' FAD . . . I 3 2.667 21.887 47.721 1 61.75 0 O2' FAD 701 A 1 HETATM 44 C C3' FAD . . . I 3 3.35 21.302 45.603 1 61.75 0 C3' FAD 701 A 1 HETATM 45 O O3' FAD . . . I 3 2.788 21.185 44.303 1 61.75 0 O3' FAD 701 A 1 HETATM 46 C C4' FAD . . . I 3 3.826 19.945 46.132 1 61.75 0 C4' FAD 701 A 1 HETATM 47 O O4' FAD . . . I 3 4.552 20.084 47.353 1 61.75 0 O4' FAD 701 A 1 HETATM 48 C C5' FAD . . . I 3 4.723 19.224 45.142 1 61.75 0 C5' FAD 701 A 1 HETATM 49 O O5' FAD . . . I 3 5.002 17.863 45.548 1 61.75 0 O5' FAD 701 A 1 HETATM 50 P P FAD . . . I 3 6.007 16.951 44.708 1 61.75 0 P FAD 701 A 1 HETATM 51 O O1P FAD . . . I 3 6.48 15.831 45.556 1 61.75 0 O1P FAD 701 A 1 HETATM 52 O O2P FAD . . . I 3 5.554 16.669 43.324 1 61.75 0 O2P FAD 701 A 1 HETATM 53 O O3P FAD . . . I 3 7.218 17.951 44.612 1 61.75 0 O3P FAD 701 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 135 _model_server_stats.query_time_ms 447 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #