data_8QOB # _model_server_result.job_id mWVebAQ7zKZFxSzNknGaeg _model_server_result.datetime_utc '2025-08-23 15:37:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qob # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8QOB # _exptl.entry_id 8QOB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 169.073 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{R})-2-azanyl-3-phosphono-propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QOB _cell.length_a 145.267 _cell.length_b 145.267 _cell.length_c 145.267 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QOB _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall 'I 2b 2c 3' _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 98 A ASP 86 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc2 A O ASP 100 A ASP 88 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc3 A OD1 ASP 255 A ASP 243 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc4 B O08 WHT . A WHT 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc5 C MG MG . A MG 302 1_555 E O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc6 C MG MG . A MG 302 1_555 E O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? # _chem_comp.formula 'C3 H8 N O5 P' _chem_comp.formula_weight 169.073 _chem_comp.id WHT _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{R})-2-azanyl-3-phosphono-propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O04 C03 WHT doub 376 n n O05 C03 WHT sing 377 n n C03 C02 WHT sing 378 n n N06 C02 WHT sing 379 n n C02 C01 WHT sing 380 n n P07 C01 WHT sing 381 n n O08 P07 WHT doub 382 n n O09 P07 WHT sing 383 n n O10 P07 WHT sing 384 n n C01 H012 WHT sing 385 n n C01 H011 WHT sing 386 n n C02 H021 WHT sing 387 n n N06 H061 WHT sing 388 n n N06 H062 WHT sing 389 n n O05 H2 WHT sing 390 n n O09 H3 WHT sing 391 n n O10 H4 WHT sing 392 n n # _atom_sites.entry_id 8QOB _atom_sites.fract_transf_matrix[1][1] 0.006884 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006884 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006884 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WHT A 1 301 301 WHT AP3 . C 3 MG A 1 302 1 MG MG . D 4 CL A 1 303 1 CL CL . E 5 HOH A 1 401 77 HOH HOH . E 5 HOH A 2 402 27 HOH HOH . E 5 HOH A 3 403 39 HOH HOH . E 5 HOH A 4 404 83 HOH HOH . E 5 HOH A 5 405 110 HOH HOH . E 5 HOH A 6 406 65 HOH HOH . E 5 HOH A 7 407 64 HOH HOH . E 5 HOH A 8 408 26 HOH HOH . E 5 HOH A 9 409 7 HOH HOH . E 5 HOH A 10 410 17 HOH HOH . E 5 HOH A 11 411 107 HOH HOH . E 5 HOH A 12 412 45 HOH HOH . E 5 HOH A 13 413 4 HOH HOH . E 5 HOH A 14 414 32 HOH HOH . E 5 HOH A 15 415 5 HOH HOH . E 5 HOH A 16 416 18 HOH HOH . E 5 HOH A 17 417 6 HOH HOH . E 5 HOH A 18 418 41 HOH HOH . E 5 HOH A 19 419 2 HOH HOH . E 5 HOH A 20 420 9 HOH HOH . E 5 HOH A 21 421 99 HOH HOH . E 5 HOH A 22 422 33 HOH HOH . E 5 HOH A 23 423 24 HOH HOH . E 5 HOH A 24 424 10 HOH HOH . E 5 HOH A 25 425 103 HOH HOH . E 5 HOH A 26 426 12 HOH HOH . E 5 HOH A 27 427 89 HOH HOH . E 5 HOH A 28 428 3 HOH HOH . E 5 HOH A 29 429 57 HOH HOH . E 5 HOH A 30 430 14 HOH HOH . E 5 HOH A 31 431 11 HOH HOH . E 5 HOH A 32 432 13 HOH HOH . E 5 HOH A 33 433 15 HOH HOH . E 5 HOH A 34 434 102 HOH HOH . E 5 HOH A 35 435 97 HOH HOH . E 5 HOH A 36 436 70 HOH HOH . E 5 HOH A 37 437 100 HOH HOH . E 5 HOH A 38 438 55 HOH HOH . E 5 HOH A 39 439 20 HOH HOH . E 5 HOH A 40 440 30 HOH HOH . E 5 HOH A 41 441 52 HOH HOH . E 5 HOH A 42 442 104 HOH HOH . E 5 HOH A 43 443 35 HOH HOH . E 5 HOH A 44 444 36 HOH HOH . E 5 HOH A 45 445 16 HOH HOH . E 5 HOH A 46 446 25 HOH HOH . E 5 HOH A 47 447 93 HOH HOH . E 5 HOH A 48 448 62 HOH HOH . E 5 HOH A 49 449 78 HOH HOH . E 5 HOH A 50 450 74 HOH HOH . E 5 HOH A 51 451 111 HOH HOH . E 5 HOH A 52 452 108 HOH HOH . E 5 HOH A 53 453 96 HOH HOH . E 5 HOH A 54 454 76 HOH HOH . E 5 HOH A 55 455 37 HOH HOH . E 5 HOH A 56 456 48 HOH HOH . E 5 HOH A 57 457 38 HOH HOH . E 5 HOH A 58 458 63 HOH HOH . E 5 HOH A 59 459 34 HOH HOH . E 5 HOH A 60 460 71 HOH HOH . E 5 HOH A 61 461 61 HOH HOH . E 5 HOH A 62 462 29 HOH HOH . E 5 HOH A 63 463 84 HOH HOH . E 5 HOH A 64 464 46 HOH HOH . E 5 HOH A 65 465 81 HOH HOH . E 5 HOH A 66 466 43 HOH HOH . E 5 HOH A 67 467 58 HOH HOH . E 5 HOH A 68 468 21 HOH HOH . E 5 HOH A 69 469 85 HOH HOH . E 5 HOH A 70 470 44 HOH HOH . E 5 HOH A 71 471 94 HOH HOH . E 5 HOH A 72 472 66 HOH HOH . E 5 HOH A 73 473 72 HOH HOH . E 5 HOH A 74 474 69 HOH HOH . E 5 HOH A 75 475 109 HOH HOH . E 5 HOH A 76 476 92 HOH HOH . E 5 HOH A 77 477 106 HOH HOH . E 5 HOH A 78 478 56 HOH HOH . E 5 HOH A 79 479 88 HOH HOH . E 5 HOH A 80 480 47 HOH HOH . E 5 HOH A 81 481 98 HOH HOH . E 5 HOH A 82 482 87 HOH HOH . E 5 HOH A 83 483 80 HOH HOH . E 5 HOH A 84 484 82 HOH HOH . E 5 HOH A 85 485 54 HOH HOH . E 5 HOH A 86 486 68 HOH HOH . E 5 HOH A 87 487 86 HOH HOH . E 5 HOH A 88 488 79 HOH HOH . E 5 HOH A 89 489 42 HOH HOH . E 5 HOH A 90 490 75 HOH HOH . E 5 HOH A 91 491 22 HOH HOH . E 5 HOH A 92 492 67 HOH HOH . E 5 HOH A 93 493 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 WHT . . . B 2 -8.36 -7.976 13.481 1 67.88 ? C01 WHT 301 A 1 HETATM 2 C C02 WHT . . . B 2 -8.681 -9.131 12.461 1 74.95 ? C02 WHT 301 A 1 HETATM 3 C C03 WHT . . . B 2 -8.911 -8.779 10.946 1 70.99 ? C03 WHT 301 A 1 HETATM 4 N N06 WHT . . . B 2 -7.752 -10.254 12.57 1 63.08 ? N06 WHT 301 A 1 HETATM 5 O O04 WHT . . . B 2 -8.647 -9.606 10.014 1 49.99 ? O04 WHT 301 A 1 HETATM 6 O O05 WHT . . . B 2 -9.398 -7.67 10.59 1 66.45 ? O05 WHT 301 A 1 HETATM 7 O O08 WHT . . . B 2 -6.846 -9.724 15.122 1 68.21 ? O08 WHT 301 A 1 HETATM 8 O O09 WHT . . . B 2 -5.933 -7.469 14.742 1 66.05 ? O09 WHT 301 A 1 HETATM 9 O O10 WHT . . . B 2 -7.776 -7.901 16.357 1 51.34 ? O10 WHT 301 A 1 HETATM 10 P P07 WHT . . . B 2 -7.219 -8.261 14.985 1 79.15 ? P07 WHT 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #