data_8QPX
#
_model_server_result.job_id            bTpQAYMhFz4unZ_KtbypTw 
_model_server_result.datetime_utc      '2024-11-14 21:23:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8qpx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":405}' 
#
_entry.id    8QPX 
#
_exptl.entry_id    8QPX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.82 
_cell.angle_gamma         90 
_cell.entry_id            8QPX 
_cell.length_a            40.91 
_cell.length_b            32.73 
_cell.length_c            92.05 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8QPX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
4 ? 2 5 3 MAN BMA C1 O1 . O6 HO6 . sing 
5 ? 2 6 1 FUC NAG C1 O1 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 402 NAG 
2 n B NAG 2 B 2 NAG A 404 NAG 
2 n B BMA 3 B 3 BMA A 405 BMA 
2 n B MAN 4 B 4 MAN A 406 MAN 
2 n B MAN 5 B 5 MAN A 407 MAN 
2 n B FUC 6 B 6 FUC A 403 FUC 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 33 A CYS 160 1_555 A SG CYS 91 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 142 A CYS 269 1_555 A SG CYS 209 A CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A ND2 ASN 52 A ASN 179 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 A ND2 ASN 198 A ASN 325 1_555 C C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale4 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale5 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale6 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale7 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 107 n n 
C1 C2 EDO sing 108 n n 
C1 H11 EDO sing 109 n n 
C1 H12 EDO sing 110 n n 
O1 HO1 EDO sing 111 n n 
C2 O2 EDO sing 112 n n 
C2 H21 EDO sing 113 n n 
C2 H22 EDO sing 114 n n 
O2 HO2 EDO sing 115 n n 
#
_atom_sites.entry_id                     8QPX 
_atom_sites.fract_transf_matrix[1][1]    0.024444 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00035 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.030553 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010865 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 401 401 NAG NAG . 
D 4 EDO A 1 402 1 EDO EDO . 
E 4 EDO A 1 403 2 EDO EDO . 
F 4 EDO A 1 404 3 EDO EDO . 
G 4 EDO A 1 405 4 EDO EDO . 
H 4 EDO A 1 406 5 EDO EDO . 
I 5 SO4 A 1 407 1 SO4 SO4 . 
J 5 SO4 A 1 408 2 SO4 SO4 . 
K 6 HOH A 1 501 91 HOH HOH . 
K 6 HOH A 2 502 66 HOH HOH . 
K 6 HOH A 3 503 25 HOH HOH . 
K 6 HOH A 4 504 55 HOH HOH . 
K 6 HOH A 5 505 2 HOH HOH . 
K 6 HOH A 6 506 57 HOH HOH . 
K 6 HOH A 7 507 88 HOH HOH . 
K 6 HOH A 8 508 77 HOH HOH . 
K 6 HOH A 9 509 56 HOH HOH . 
K 6 HOH A 10 510 34 HOH HOH . 
K 6 HOH A 11 511 50 HOH HOH . 
K 6 HOH A 12 512 69 HOH HOH . 
K 6 HOH A 13 513 15 HOH HOH . 
K 6 HOH A 14 514 3 HOH HOH . 
K 6 HOH A 15 515 74 HOH HOH . 
K 6 HOH A 16 516 45 HOH HOH . 
K 6 HOH A 17 517 49 HOH HOH . 
K 6 HOH A 18 518 67 HOH HOH . 
K 6 HOH A 19 519 7 HOH HOH . 
K 6 HOH A 20 520 31 HOH HOH . 
K 6 HOH A 21 521 12 HOH HOH . 
K 6 HOH A 22 522 38 HOH HOH . 
K 6 HOH A 23 523 82 HOH HOH . 
K 6 HOH A 24 524 8 HOH HOH . 
K 6 HOH A 25 525 40 HOH HOH . 
K 6 HOH A 26 526 26 HOH HOH . 
K 6 HOH A 27 527 90 HOH HOH . 
K 6 HOH A 28 528 36 HOH HOH . 
K 6 HOH A 29 529 81 HOH HOH . 
K 6 HOH A 30 530 60 HOH HOH . 
K 6 HOH A 31 531 14 HOH HOH . 
K 6 HOH A 32 532 39 HOH HOH . 
K 6 HOH A 33 533 16 HOH HOH . 
K 6 HOH A 34 534 89 HOH HOH . 
K 6 HOH A 35 535 4 HOH HOH . 
K 6 HOH A 36 536 78 HOH HOH . 
K 6 HOH A 37 537 53 HOH HOH . 
K 6 HOH A 38 538 71 HOH HOH . 
K 6 HOH A 39 539 54 HOH HOH . 
K 6 HOH A 40 540 46 HOH HOH . 
K 6 HOH A 41 541 42 HOH HOH . 
K 6 HOH A 42 542 52 HOH HOH . 
K 6 HOH A 43 543 48 HOH HOH . 
K 6 HOH A 44 544 10 HOH HOH . 
K 6 HOH A 45 545 33 HOH HOH . 
K 6 HOH A 46 546 18 HOH HOH . 
K 6 HOH A 47 547 51 HOH HOH . 
K 6 HOH A 48 548 92 HOH HOH . 
K 6 HOH A 49 549 83 HOH HOH . 
K 6 HOH A 50 550 11 HOH HOH . 
K 6 HOH A 51 551 1 HOH HOH . 
K 6 HOH A 52 552 19 HOH HOH . 
K 6 HOH A 53 553 30 HOH HOH . 
K 6 HOH A 54 554 44 HOH HOH . 
K 6 HOH A 55 555 20 HOH HOH . 
K 6 HOH A 56 556 68 HOH HOH . 
K 6 HOH A 57 557 95 HOH HOH . 
K 6 HOH A 58 558 84 HOH HOH . 
K 6 HOH A 59 559 80 HOH HOH . 
K 6 HOH A 60 560 32 HOH HOH . 
K 6 HOH A 61 561 24 HOH HOH . 
K 6 HOH A 62 562 43 HOH HOH . 
K 6 HOH A 63 563 27 HOH HOH . 
K 6 HOH A 64 564 85 HOH HOH . 
K 6 HOH A 65 565 76 HOH HOH . 
K 6 HOH A 66 566 58 HOH HOH . 
K 6 HOH A 67 567 13 HOH HOH . 
K 6 HOH A 68 568 9 HOH HOH . 
K 6 HOH A 69 569 65 HOH HOH . 
K 6 HOH A 70 570 17 HOH HOH . 
K 6 HOH A 71 571 73 HOH HOH . 
K 6 HOH A 72 572 63 HOH HOH . 
K 6 HOH A 73 573 79 HOH HOH . 
K 6 HOH A 74 574 41 HOH HOH . 
K 6 HOH A 75 575 35 HOH HOH . 
K 6 HOH A 76 576 28 HOH HOH . 
K 6 HOH A 77 577 96 HOH HOH . 
K 6 HOH A 78 578 97 HOH HOH . 
K 6 HOH A 79 579 5 HOH HOH . 
K 6 HOH A 80 580 6 HOH HOH . 
K 6 HOH A 81 581 61 HOH HOH . 
K 6 HOH A 82 582 86 HOH HOH . 
K 6 HOH A 83 583 94 HOH HOH . 
K 6 HOH A 84 584 75 HOH HOH . 
K 6 HOH A 85 585 70 HOH HOH . 
K 6 HOH A 86 586 64 HOH HOH . 
K 6 HOH A 87 587 62 HOH HOH . 
K 6 HOH A 88 588 72 HOH HOH . 
K 6 HOH A 89 589 37 HOH HOH . 
K 6 HOH A 90 590 21 HOH HOH . 
K 6 HOH A 91 591 47 HOH HOH . 
K 6 HOH A 92 592 98 HOH HOH . 
K 6 HOH A 93 593 93 HOH HOH . 
K 6 HOH A 94 594 29 HOH HOH . 
K 6 HOH A 95 595 87 HOH HOH . 
K 6 HOH A 96 596 22 HOH HOH . 
K 6 HOH A 97 597 59 HOH HOH . 
K 6 HOH A 98 598 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 4 7.654 0.291 -17.395 1 53.85 ? C1 EDO 405 A 1 
HETATM 2 O O1 EDO . . . G 4 7.597 -0.593 -16.269 1 57.02 ? O1 EDO 405 A 1 
HETATM 3 C C2 EDO . . . G 4 6.741 -0.232 -18.498 1 53.37 ? C2 EDO 405 A 1 
HETATM 4 O O2 EDO . . . G 4 7.133 -1.564 -18.852 1 53.48 ? O2 EDO 405 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#