data_8QPX # _model_server_result.job_id yN4Op080Nt6oQyMSp-C-CA _model_server_result.datetime_utc '2024-11-14 21:19:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qpx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":407}' # _entry.id 8QPX # _exptl.entry_id 8QPX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.82 _cell.angle_gamma 90 _cell.entry_id 8QPX _cell.length_a 40.91 _cell.length_b 32.73 _cell.length_c 92.05 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QPX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 3 MAN BMA C1 O1 . O6 HO6 . sing 5 ? 2 6 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 402 NAG 2 n B NAG 2 B 2 NAG A 404 NAG 2 n B BMA 3 B 3 BMA A 405 BMA 2 n B MAN 4 B 4 MAN A 406 MAN 2 n B MAN 5 B 5 MAN A 407 MAN 2 n B FUC 6 B 6 FUC A 403 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 33 A CYS 160 1_555 A SG CYS 91 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 142 A CYS 269 1_555 A SG CYS 209 A CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 52 A ASN 179 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 198 A ASN 325 1_555 C C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 400 n n S O2 SO4 doub 401 n n S O3 SO4 sing 402 n n S O4 SO4 sing 403 n n # _atom_sites.entry_id 8QPX _atom_sites.fract_transf_matrix[1][1] 0.024444 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00035 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030553 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010865 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 401 401 NAG NAG . D 4 EDO A 1 402 1 EDO EDO . E 4 EDO A 1 403 2 EDO EDO . F 4 EDO A 1 404 3 EDO EDO . G 4 EDO A 1 405 4 EDO EDO . H 4 EDO A 1 406 5 EDO EDO . I 5 SO4 A 1 407 1 SO4 SO4 . J 5 SO4 A 1 408 2 SO4 SO4 . K 6 HOH A 1 501 91 HOH HOH . K 6 HOH A 2 502 66 HOH HOH . K 6 HOH A 3 503 25 HOH HOH . K 6 HOH A 4 504 55 HOH HOH . K 6 HOH A 5 505 2 HOH HOH . K 6 HOH A 6 506 57 HOH HOH . K 6 HOH A 7 507 88 HOH HOH . K 6 HOH A 8 508 77 HOH HOH . K 6 HOH A 9 509 56 HOH HOH . K 6 HOH A 10 510 34 HOH HOH . K 6 HOH A 11 511 50 HOH HOH . K 6 HOH A 12 512 69 HOH HOH . K 6 HOH A 13 513 15 HOH HOH . K 6 HOH A 14 514 3 HOH HOH . K 6 HOH A 15 515 74 HOH HOH . K 6 HOH A 16 516 45 HOH HOH . K 6 HOH A 17 517 49 HOH HOH . K 6 HOH A 18 518 67 HOH HOH . K 6 HOH A 19 519 7 HOH HOH . K 6 HOH A 20 520 31 HOH HOH . K 6 HOH A 21 521 12 HOH HOH . K 6 HOH A 22 522 38 HOH HOH . K 6 HOH A 23 523 82 HOH HOH . K 6 HOH A 24 524 8 HOH HOH . K 6 HOH A 25 525 40 HOH HOH . K 6 HOH A 26 526 26 HOH HOH . K 6 HOH A 27 527 90 HOH HOH . K 6 HOH A 28 528 36 HOH HOH . K 6 HOH A 29 529 81 HOH HOH . K 6 HOH A 30 530 60 HOH HOH . K 6 HOH A 31 531 14 HOH HOH . K 6 HOH A 32 532 39 HOH HOH . K 6 HOH A 33 533 16 HOH HOH . K 6 HOH A 34 534 89 HOH HOH . K 6 HOH A 35 535 4 HOH HOH . K 6 HOH A 36 536 78 HOH HOH . K 6 HOH A 37 537 53 HOH HOH . K 6 HOH A 38 538 71 HOH HOH . K 6 HOH A 39 539 54 HOH HOH . K 6 HOH A 40 540 46 HOH HOH . K 6 HOH A 41 541 42 HOH HOH . K 6 HOH A 42 542 52 HOH HOH . K 6 HOH A 43 543 48 HOH HOH . K 6 HOH A 44 544 10 HOH HOH . K 6 HOH A 45 545 33 HOH HOH . K 6 HOH A 46 546 18 HOH HOH . K 6 HOH A 47 547 51 HOH HOH . K 6 HOH A 48 548 92 HOH HOH . K 6 HOH A 49 549 83 HOH HOH . K 6 HOH A 50 550 11 HOH HOH . K 6 HOH A 51 551 1 HOH HOH . K 6 HOH A 52 552 19 HOH HOH . K 6 HOH A 53 553 30 HOH HOH . K 6 HOH A 54 554 44 HOH HOH . K 6 HOH A 55 555 20 HOH HOH . K 6 HOH A 56 556 68 HOH HOH . K 6 HOH A 57 557 95 HOH HOH . K 6 HOH A 58 558 84 HOH HOH . K 6 HOH A 59 559 80 HOH HOH . K 6 HOH A 60 560 32 HOH HOH . K 6 HOH A 61 561 24 HOH HOH . K 6 HOH A 62 562 43 HOH HOH . K 6 HOH A 63 563 27 HOH HOH . K 6 HOH A 64 564 85 HOH HOH . K 6 HOH A 65 565 76 HOH HOH . K 6 HOH A 66 566 58 HOH HOH . K 6 HOH A 67 567 13 HOH HOH . K 6 HOH A 68 568 9 HOH HOH . K 6 HOH A 69 569 65 HOH HOH . K 6 HOH A 70 570 17 HOH HOH . K 6 HOH A 71 571 73 HOH HOH . K 6 HOH A 72 572 63 HOH HOH . K 6 HOH A 73 573 79 HOH HOH . K 6 HOH A 74 574 41 HOH HOH . K 6 HOH A 75 575 35 HOH HOH . K 6 HOH A 76 576 28 HOH HOH . K 6 HOH A 77 577 96 HOH HOH . K 6 HOH A 78 578 97 HOH HOH . K 6 HOH A 79 579 5 HOH HOH . K 6 HOH A 80 580 6 HOH HOH . K 6 HOH A 81 581 61 HOH HOH . K 6 HOH A 82 582 86 HOH HOH . K 6 HOH A 83 583 94 HOH HOH . K 6 HOH A 84 584 75 HOH HOH . K 6 HOH A 85 585 70 HOH HOH . K 6 HOH A 86 586 64 HOH HOH . K 6 HOH A 87 587 62 HOH HOH . K 6 HOH A 88 588 72 HOH HOH . K 6 HOH A 89 589 37 HOH HOH . K 6 HOH A 90 590 21 HOH HOH . K 6 HOH A 91 591 47 HOH HOH . K 6 HOH A 92 592 98 HOH HOH . K 6 HOH A 93 593 93 HOH HOH . K 6 HOH A 94 594 29 HOH HOH . K 6 HOH A 95 595 87 HOH HOH . K 6 HOH A 96 596 22 HOH HOH . K 6 HOH A 97 597 59 HOH HOH . K 6 HOH A 98 598 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . I 5 18.074 -10.475 -28.938 1 97.17 ? S SO4 407 A 1 HETATM 2 O O1 SO4 . . . I 5 18.244 -11.561 -29.899 1 87.33 ? O1 SO4 407 A 1 HETATM 3 O O2 SO4 . . . I 5 18.954 -9.366 -29.293 1 80.57 ? O2 SO4 407 A 1 HETATM 4 O O3 SO4 . . . I 5 18.41 -10.953 -27.6 1 71.07 ? O3 SO4 407 A 1 HETATM 5 O O4 SO4 . . . I 5 16.687 -10.019 -28.958 1 85.22 ? O4 SO4 407 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 54 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 1401 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #