data_8QQF # _model_server_result.job_id VCQuwZq_XFPjMpaL8AfMAw _model_server_result.datetime_utc '2025-03-09 01:49:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qqf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":703}' # _entry.id 8QQF # _exptl.entry_id 8QQF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8QQF _cell.length_a 134.159 _cell.length_b 134.159 _cell.length_c 123.542 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QQF _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,K,M,O 1 1 B,D,F,G,H,I,J,L,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8QQF _atom_sites.fract_transf_matrix[1][1] 0.007454 _atom_sites.fract_transf_matrix[1][2] 0.004303 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008094 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PO4 A 1 701 3 PO4 PO4 . F 4 GOL C 1 701 701 GOL GOL . G 4 GOL C 1 702 705 GOL GOL . H 4 GOL C 1 703 706 GOL GOL . I 3 PO4 C 1 704 1 PO4 PO4 . J 3 PO4 C 1 705 4 PO4 PO4 . K 3 PO4 B 1 301 2 PO4 PO4 . L 3 PO4 D 1 301 5 PO4 PO4 . M 5 HOH A 1 801 256 HOH HOH . M 5 HOH A 2 802 195 HOH HOH . M 5 HOH A 3 803 199 HOH HOH . M 5 HOH A 4 804 245 HOH HOH . M 5 HOH A 5 805 232 HOH HOH . M 5 HOH A 6 806 215 HOH HOH . M 5 HOH A 7 807 1 HOH HOH . M 5 HOH A 8 808 169 HOH HOH . M 5 HOH A 9 809 19 HOH HOH . M 5 HOH A 10 810 50 HOH HOH . M 5 HOH A 11 811 115 HOH HOH . M 5 HOH A 12 812 163 HOH HOH . M 5 HOH A 13 813 247 HOH HOH . M 5 HOH A 14 814 233 HOH HOH . M 5 HOH A 15 815 78 HOH HOH . M 5 HOH A 16 816 5 HOH HOH . M 5 HOH A 17 817 155 HOH HOH . M 5 HOH A 18 818 252 HOH HOH . M 5 HOH A 19 819 143 HOH HOH . M 5 HOH A 20 820 159 HOH HOH . M 5 HOH A 21 821 99 HOH HOH . M 5 HOH A 22 822 189 HOH HOH . M 5 HOH A 23 823 250 HOH HOH . M 5 HOH A 24 824 183 HOH HOH . M 5 HOH A 25 825 92 HOH HOH . M 5 HOH A 26 826 246 HOH HOH . M 5 HOH A 27 827 207 HOH HOH . M 5 HOH A 28 828 182 HOH HOH . M 5 HOH A 29 829 122 HOH HOH . M 5 HOH A 30 830 160 HOH HOH . M 5 HOH A 31 831 198 HOH HOH . M 5 HOH A 32 832 142 HOH HOH . M 5 HOH A 33 833 58 HOH HOH . M 5 HOH A 34 834 188 HOH HOH . M 5 HOH A 35 835 138 HOH HOH . M 5 HOH A 36 836 120 HOH HOH . M 5 HOH A 37 837 17 HOH HOH . M 5 HOH A 38 838 111 HOH HOH . M 5 HOH A 39 839 116 HOH HOH . M 5 HOH A 40 840 254 HOH HOH . M 5 HOH A 41 841 164 HOH HOH . M 5 HOH A 42 842 26 HOH HOH . M 5 HOH A 43 843 79 HOH HOH . M 5 HOH A 44 844 112 HOH HOH . M 5 HOH A 45 845 190 HOH HOH . M 5 HOH A 46 846 184 HOH HOH . M 5 HOH A 47 847 124 HOH HOH . M 5 HOH A 48 848 133 HOH HOH . M 5 HOH A 49 849 123 HOH HOH . M 5 HOH A 50 850 253 HOH HOH . M 5 HOH A 51 851 134 HOH HOH . M 5 HOH A 52 852 149 HOH HOH . M 5 HOH A 53 853 125 HOH HOH . N 5 HOH C 1 801 236 HOH HOH . N 5 HOH C 2 802 194 HOH HOH . N 5 HOH C 3 803 131 HOH HOH . N 5 HOH C 4 804 176 HOH HOH . N 5 HOH C 5 805 225 HOH HOH . N 5 HOH C 6 806 82 HOH HOH . N 5 HOH C 7 807 13 HOH HOH . N 5 HOH C 8 808 205 HOH HOH . N 5 HOH C 9 809 214 HOH HOH . N 5 HOH C 10 810 229 HOH HOH . N 5 HOH C 11 811 235 HOH HOH . N 5 HOH C 12 812 7 HOH HOH . N 5 HOH C 13 813 227 HOH HOH . N 5 HOH C 14 814 52 HOH HOH . N 5 HOH C 15 815 181 HOH HOH . N 5 HOH C 16 816 2 HOH HOH . N 5 HOH C 17 817 161 HOH HOH . N 5 HOH C 18 818 167 HOH HOH . N 5 HOH C 19 819 25 HOH HOH . N 5 HOH C 20 820 240 HOH HOH . N 5 HOH C 21 821 154 HOH HOH . N 5 HOH C 22 822 152 HOH HOH . N 5 HOH C 23 823 211 HOH HOH . N 5 HOH C 24 824 226 HOH HOH . N 5 HOH C 25 825 4 HOH HOH . N 5 HOH C 26 826 179 HOH HOH . N 5 HOH C 27 827 219 HOH HOH . N 5 HOH C 28 828 129 HOH HOH . N 5 HOH C 29 829 241 HOH HOH . N 5 HOH C 30 830 178 HOH HOH . N 5 HOH C 31 831 265 HOH HOH . N 5 HOH C 32 832 173 HOH HOH . N 5 HOH C 33 833 103 HOH HOH . N 5 HOH C 34 834 166 HOH HOH . N 5 HOH C 35 835 165 HOH HOH . N 5 HOH C 36 836 36 HOH HOH . N 5 HOH C 37 837 175 HOH HOH . N 5 HOH C 38 838 172 HOH HOH . N 5 HOH C 39 839 230 HOH HOH . N 5 HOH C 40 840 16 HOH HOH . N 5 HOH C 41 841 9 HOH HOH . N 5 HOH C 42 842 213 HOH HOH . N 5 HOH C 43 843 144 HOH HOH . N 5 HOH C 44 844 237 HOH HOH . N 5 HOH C 45 845 258 HOH HOH . N 5 HOH C 46 846 128 HOH HOH . N 5 HOH C 47 847 83 HOH HOH . N 5 HOH C 48 848 157 HOH HOH . N 5 HOH C 49 849 104 HOH HOH . N 5 HOH C 50 850 170 HOH HOH . N 5 HOH C 51 851 158 HOH HOH . N 5 HOH C 52 852 259 HOH HOH . N 5 HOH C 53 853 193 HOH HOH . N 5 HOH C 54 854 257 HOH HOH . N 5 HOH C 55 855 151 HOH HOH . N 5 HOH C 56 856 251 HOH HOH . N 5 HOH C 57 857 255 HOH HOH . N 5 HOH C 58 858 126 HOH HOH . N 5 HOH C 59 859 96 HOH HOH . N 5 HOH C 60 860 132 HOH HOH . N 5 HOH C 61 861 95 HOH HOH . N 5 HOH C 62 862 243 HOH HOH . N 5 HOH C 63 863 260 HOH HOH . N 5 HOH C 64 864 238 HOH HOH . N 5 HOH C 65 865 97 HOH HOH . N 5 HOH C 66 866 153 HOH HOH . N 5 HOH C 67 867 105 HOH HOH . N 5 HOH C 68 868 106 HOH HOH . N 5 HOH C 69 869 146 HOH HOH . O 5 HOH B 1 401 202 HOH HOH . O 5 HOH B 2 402 201 HOH HOH . O 5 HOH B 3 403 43 HOH HOH . P 5 HOH D 1 401 266 HOH HOH . P 5 HOH D 2 402 218 HOH HOH . P 5 HOH D 3 403 180 HOH HOH . P 5 HOH D 4 404 23 HOH HOH . P 5 HOH D 5 405 224 HOH HOH . P 5 HOH D 6 406 222 HOH HOH . P 5 HOH D 7 407 171 HOH HOH . P 5 HOH D 8 408 221 HOH HOH . P 5 HOH D 9 409 223 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 -19.577 56.233 -1.868 1 49.37 ? C1 GOL 703 C 1 HETATM 2 O O1 GOL . . . H 4 -19.7 57.62 -2.102 1 56.45 ? O1 GOL 703 C 1 HETATM 3 C C2 GOL . . . H 4 -18.107 55.888 -1.721 1 47.22 ? C2 GOL 703 C 1 HETATM 4 O O2 GOL . . . H 4 -17.844 54.692 -2.412 1 49.83 ? O2 GOL 703 C 1 HETATM 5 C C3 GOL . . . H 4 -17.746 55.752 -0.256 1 49.35 ? C3 GOL 703 C 1 HETATM 6 O O3 GOL . . . H 4 -16.478 55.145 -0.165 1 47.97 ? O3 GOL 703 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #