data_8QQK
#
_model_server_result.job_id            TecNvkl-RO-WkxlZhc5QhA 
_model_server_result.datetime_utc      '2024-10-18 06:14:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8qqk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":706}' 
#
_entry.id    8QQK 
#
_exptl.entry_id    8QQK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              838.854 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME O' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8QQK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8QQK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 284 A HIS 284 1_555 K CU CU . A CU 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc2 A NE2 HIS 333 A HIS 333 1_555 K CU CU . A CU 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc3 A NE2 HIS 334 A HIS 334 1_555 K CU CU . A CU 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc4 A NE2 HIS 419 A HIS 419 1_555 J FE HEO . A HEO 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc5 A NE2 HIS 421 A HIS 421 1_555 I FE HEM . A HEM 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
#
_chem_comp.formula           'C49 H58 Fe N4 O5 2' 
_chem_comp.formula_weight    838.854 
_chem_comp.id                HEO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME O' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEO sing 343 n n 
FE NB HEO sing 344 n n 
FE NC HEO sing 345 n n 
FE ND HEO sing 346 n n 
CHA C1A HEO doub 347 n n 
CHA C4D HEO sing 348 n n 
CHA HHA HEO sing 349 n n 
CHB C4A HEO doub 350 n n 
CHB C1B HEO sing 351 n n 
CHB HHB HEO sing 352 n n 
CHC C4B HEO doub 353 n n 
CHC C1C HEO sing 354 n n 
CHC HHC HEO sing 355 n n 
CHD C4C HEO sing 356 n n 
CHD C1D HEO doub 357 n n 
CHD HHD HEO sing 358 n n 
NA C1A HEO sing 359 n n 
NA C4A HEO sing 360 n n 
C1A C2A HEO sing 361 n n 
C2A C3A HEO doub 362 n n 
C2A CAA HEO sing 363 n n 
C3A C4A HEO sing 364 n n 
C3A CMA HEO sing 365 n n 
CMA HA1 HEO sing 366 n n 
CMA HA2 HEO sing 367 n n 
CMA HA3 HEO sing 368 n n 
CAA CBA HEO sing 369 n n 
CAA HAA1 HEO sing 370 n n 
CAA HAA2 HEO sing 371 n n 
CBA CGA HEO sing 372 n n 
CBA HBA1 HEO sing 373 n n 
CBA HBA2 HEO sing 374 n n 
CGA O1A HEO doub 375 n n 
CGA O2A HEO sing 376 n n 
O2A H2A HEO sing 377 n n 
NB C1B HEO doub 378 n n 
NB C4B HEO sing 379 n n 
C1B C2B HEO sing 380 n n 
C2B C3B HEO doub 381 n n 
C2B CMB HEO sing 382 n n 
C3B C4B HEO sing 383 n n 
C3B C11 HEO sing 384 n n 
CMB HMB1 HEO sing 385 n n 
CMB HMB2 HEO sing 386 n n 
CMB HMB3 HEO sing 387 n n 
NC C1C HEO sing 388 n y 
NC C4C HEO sing 389 n y 
C1C C2C HEO doub 390 n y 
C2C C3C HEO sing 391 n y 
C2C CMC HEO sing 392 n n 
C3C C4C HEO doub 393 n y 
C3C CAC HEO sing 394 n n 
CMC HMC1 HEO sing 395 n n 
CMC HMC2 HEO sing 396 n n 
CMC HMC3 HEO sing 397 n n 
CAC CBC HEO doub 398 n n 
CAC HAC HEO sing 399 n n 
CBC HBC1 HEO sing 400 n n 
CBC HBC2 HEO sing 401 n n 
ND C1D HEO sing 402 n n 
ND C4D HEO doub 403 n n 
C1D C2D HEO sing 404 n n 
C2D C3D HEO doub 405 n n 
C2D CMD HEO sing 406 n n 
C3D C4D HEO sing 407 n n 
C3D CAD HEO sing 408 n n 
CMD HMD1 HEO sing 409 n n 
CMD HMD2 HEO sing 410 n n 
CMD HMD3 HEO sing 411 n n 
CAD CBD HEO sing 412 n n 
CAD HAD1 HEO sing 413 n n 
CAD HAD2 HEO sing 414 n n 
CBD CGD HEO sing 415 n n 
CBD HBD1 HEO sing 416 n n 
CBD HBD2 HEO sing 417 n n 
CGD O1D HEO doub 418 n n 
CGD O2D HEO sing 419 n n 
O2D H2D HEO sing 420 n n 
C11 O11 HEO sing 421 n n 
C11 C12 HEO sing 422 n n 
C11 H11 HEO sing 423 n n 
O11 HO1 HEO sing 424 n n 
C12 C13 HEO sing 425 n n 
C12 H121 HEO sing 426 n n 
C12 H122 HEO sing 427 n n 
C13 C14 HEO sing 428 n n 
C13 H131 HEO sing 429 n n 
C13 H132 HEO sing 430 n n 
C14 C15 HEO doub 431 e n 
C14 H14 HEO sing 432 n n 
C15 C16 HEO sing 433 n n 
C15 C26 HEO sing 434 n n 
C16 C17 HEO sing 435 n n 
C16 H161 HEO sing 436 n n 
C16 H162 HEO sing 437 n n 
C17 C18 HEO sing 438 n n 
C17 H171 HEO sing 439 n n 
C17 H172 HEO sing 440 n n 
C18 C19 HEO doub 441 e n 
C18 H18 HEO sing 442 n n 
C19 C20 HEO sing 443 n n 
C19 C27 HEO sing 444 n n 
C20 C21 HEO sing 445 n n 
C20 H201 HEO sing 446 n n 
C20 H202 HEO sing 447 n n 
C21 C22 HEO sing 448 n n 
C21 H211 HEO sing 449 n n 
C21 H212 HEO sing 450 n n 
C22 C23 HEO doub 451 n n 
C22 H22 HEO sing 452 n n 
C23 C24 HEO sing 453 n n 
C23 C25 HEO sing 454 n n 
C24 H241 HEO sing 455 n n 
C24 H242 HEO sing 456 n n 
C24 H243 HEO sing 457 n n 
C25 H251 HEO sing 458 n n 
C25 H252 HEO sing 459 n n 
C25 H253 HEO sing 460 n n 
C26 H261 HEO sing 461 n n 
C26 H262 HEO sing 462 n n 
C26 H263 HEO sing 463 n n 
C27 H271 HEO sing 464 n n 
C27 H272 HEO sing 465 n n 
C27 H273 HEO sing 466 n n 
#
_atom_sites.entry_id                     8QQK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 POV A 1 701 402 POV POV . 
F 5 POV A 1 702 403 POV POV . 
G 6 3PE A 1 703 404 3PE 3PE . 
H 6 3PE A 1 704 405 3PE 3PE . 
I 7 HEM A 1 705 1001 HEM HEM . 
J 8 HEO A 1 706 1002 HEO HEO . 
K 9 CU A 1 707 1003 CU CU . 
L 5 POV C 1 401 401 POV POV . 
M 6 3PE C 1 402 406 3PE 3PE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEO . . . J 8 96.571 115.708 105.781 1 51.26 ? FE HEO 706 A 1 
HETATM 2 C CHA HEO . . . J 8 95.676 114.704 109.053 1 51.26 ? CHA HEO 706 A 1 
HETATM 3 C CHB HEO . . . J 8 97.959 118.66 107.301 1 51.26 ? CHB HEO 706 A 1 
HETATM 4 C CHC HEO . . . J 8 98.669 116.375 103.019 1 51.26 ? CHC HEO 706 A 1 
HETATM 5 C CHD HEO . . . J 8 97.074 112.193 105.092 1 51.26 ? CHD HEO 706 A 1 
HETATM 6 N NA HEO . . . J 8 97.076 116.302 107.647 1 51.26 ? NA HEO 706 A 1 
HETATM 7 C C1A HEO . . . J 8 96.199 116.002 108.798 1 51.26 ? C1A HEO 706 A 1 
HETATM 8 C C2A HEO . . . J 8 95.882 117.027 109.81 1 51.26 ? C2A HEO 706 A 1 
HETATM 9 C C3A HEO . . . J 8 96.569 118.211 109.297 1 51.26 ? C3A HEO 706 A 1 
HETATM 10 C C4A HEO . . . J 8 97.181 117.724 108.039 1 51.26 ? C4A HEO 706 A 1 
HETATM 11 C CMA HEO . . . J 8 96.647 119.612 109.84 1 51.26 ? CMA HEO 706 A 1 
HETATM 12 C CAA HEO . . . J 8 95.066 116.766 111.054 1 51.26 ? CAA HEO 706 A 1 
HETATM 13 C CBA HEO . . . J 8 94.169 117.887 111.538 1 51.26 ? CBA HEO 706 A 1 
HETATM 14 C CGA HEO . . . J 8 93.426 117.338 112.729 1 51.26 ? CGA HEO 706 A 1 
HETATM 15 O O1A HEO . . . J 8 94.099 116.922 113.694 1 51.26 ? O1A HEO 706 A 1 
HETATM 16 O O2A HEO . . . J 8 92.177 117.331 112.714 1 51.26 ? O2A HEO 706 A 1 
HETATM 17 N NB HEO . . . J 8 98.166 116.918 105.446 1 51.26 ? NB HEO 706 A 1 
HETATM 18 C C1B HEO . . . J 8 98.21 118.314 105.94 1 51.26 ? C1B HEO 706 A 1 
HETATM 19 C C2B HEO . . . J 8 98.632 119.408 105.04 1 51.26 ? C2B HEO 706 A 1 
HETATM 20 C C3B HEO . . . J 8 98.837 118.756 103.763 1 51.26 ? C3B HEO 706 A 1 
HETATM 21 C C4B HEO . . . J 8 98.534 117.332 104.067 1 51.26 ? C4B HEO 706 A 1 
HETATM 22 C CMB HEO . . . J 8 98.78 120.874 105.33 1 51.26 ? CMB HEO 706 A 1 
HETATM 23 N NC HEO . . . J 8 97.845 114.598 104.671 1 51.26 ? NC HEO 706 A 1 
HETATM 24 C C1C HEO . . . J 8 98.201 115.059 103.306 1 51.26 ? C1C HEO 706 A 1 
HETATM 25 C C2C HEO . . . J 8 98.173 114.124 102.164 1 51.26 ? C2C HEO 706 A 1 
HETATM 26 C C3C HEO . . . J 8 97.703 112.904 102.782 1 51.26 ? C3C HEO 706 A 1 
HETATM 27 C C4C HEO . . . J 8 97.489 113.233 104.206 1 51.26 ? C4C HEO 706 A 1 
HETATM 28 C CMC HEO . . . J 8 98.528 114.398 100.738 1 51.26 ? CMC HEO 706 A 1 
HETATM 29 C CAC HEO . . . J 8 97.462 111.614 102.098 1 51.26 ? CAC HEO 706 A 1 
HETATM 30 C CBC HEO . . . J 8 98.468 110.813 101.801 1 51.26 ? CBC HEO 706 A 1 
HETATM 31 N ND HEO . . . J 8 96.764 114.001 106.86 1 51.26 ? ND HEO 706 A 1 
HETATM 32 C C1D HEO . . . J 8 96.493 112.652 106.308 1 51.26 ? C1D HEO 706 A 1 
HETATM 33 C C2D HEO . . . J 8 95.68 111.669 107.057 1 51.26 ? C2D HEO 706 A 1 
HETATM 34 C C3D HEO . . . J 8 95.26 112.422 108.238 1 51.26 ? C3D HEO 706 A 1 
HETATM 35 C C4D HEO . . . J 8 95.886 113.743 108.024 1 51.26 ? C4D HEO 706 A 1 
HETATM 36 C CMD HEO . . . J 8 95.371 110.254 106.637 1 51.26 ? CMD HEO 706 A 1 
HETATM 37 C CAD HEO . . . J 8 94.376 112.053 109.409 1 51.26 ? CAD HEO 706 A 1 
HETATM 38 C CBD HEO . . . J 8 94.628 110.675 109.999 1 51.26 ? CBD HEO 706 A 1 
HETATM 39 C CGD HEO . . . J 8 93.513 110.409 110.979 1 51.26 ? CGD HEO 706 A 1 
HETATM 40 O O1D HEO . . . J 8 93.632 109.471 111.794 1 51.26 ? O1D HEO 706 A 1 
HETATM 41 O O2D HEO . . . J 8 92.509 111.15 110.937 1 51.26 ? O2D HEO 706 A 1 
HETATM 42 C C11 HEO . . . J 8 99.29 119.453 102.531 1 51.26 ? C11 HEO 706 A 1 
HETATM 43 O O11 HEO . . . J 8 100.567 118.922 102.143 1 51.26 ? O11 HEO 706 A 1 
HETATM 44 C C12 HEO . . . J 8 98.369 119.402 101.321 1 51.26 ? C12 HEO 706 A 1 
HETATM 45 C C13 HEO . . . J 8 99.104 120.199 100.247 1 51.26 ? C13 HEO 706 A 1 
HETATM 46 C C14 HEO . . . J 8 98.246 120.489 99.04 1 51.26 ? C14 HEO 706 A 1 
HETATM 47 C C15 HEO . . . J 8 97.693 121.699 98.887 1 51.26 ? C15 HEO 706 A 1 
HETATM 48 C C16 HEO . . . J 8 96.82 121.982 97.682 1 51.26 ? C16 HEO 706 A 1 
HETATM 49 C C17 HEO . . . J 8 97.649 122.227 96.428 1 51.26 ? C17 HEO 706 A 1 
HETATM 50 C C18 HEO . . . J 8 97.543 123.69 96.068 1 51.26 ? C18 HEO 706 A 1 
HETATM 51 C C19 HEO . . . J 8 98.472 124.55 96.502 1 51.26 ? C19 HEO 706 A 1 
HETATM 52 C C20 HEO . . . J 8 98.4 126.016 96.169 1 51.26 ? C20 HEO 706 A 1 
HETATM 53 C C21 HEO . . . J 8 99.071 126.8 97.292 1 51.26 ? C21 HEO 706 A 1 
HETATM 54 C C22 HEO . . . J 8 98.222 126.81 98.545 1 51.26 ? C22 HEO 706 A 1 
HETATM 55 C C23 HEO . . . J 8 98.815 127.039 99.719 1 51.26 ? C23 HEO 706 A 1 
HETATM 56 C C24 HEO . . . J 8 100.294 127.279 99.755 1 51.26 ? C24 HEO 706 A 1 
HETATM 57 C C25 HEO . . . J 8 98.006 127.056 100.979 1 51.26 ? C25 HEO 706 A 1 
HETATM 58 C C26 HEO . . . J 8 97.918 122.751 99.938 1 51.26 ? C26 HEO 706 A 1 
HETATM 59 C C27 HEO . . . J 8 99.604 124.059 97.346 1 51.26 ? C27 HEO 706 A 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           59 
#