data_8QR0 # _model_server_result.job_id h9dRYO3eHUyiEafB5CCidw _model_server_result.datetime_utc '2024-11-16 19:50:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qr0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":305}' # _entry.id 8QR0 # _exptl.entry_id 8QR0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 282.547 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EICOSANE _entity.pdbx_number_of_molecules 36 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QR0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QR0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 T N N ? 3 U N N ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 Z N N ? 3 AA N N ? 3 BA N N ? 3 CA N N ? 3 DA N N ? 3 EA N N ? 3 GA N N ? 3 HA N N ? 3 IA N N ? 3 JA N N ? 3 KA N N ? 3 LA N N ? 3 MA N N ? 3 NA N N ? 3 OA N N ? 3 QA N N ? 3 RA N N ? 3 SA N N ? 3 TA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 245 A SER 245 1_555 A N LYR 246 A LYR 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale2 A C LYR 246 A LYR 246 1_555 A N LEU 247 A LEU 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C SER 245 B SER 245 1_555 B N LYR 246 B LYR 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale4 B C LYR 246 B LYR 246 1_555 B N LEU 247 B LEU 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 C C SER 245 C SER 245 1_555 C N LYR 246 C LYR 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale6 C C LYR 246 C LYR 246 1_555 C N LEU 247 C LEU 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 D C SER 245 D SER 245 1_555 D N LYR 246 D LYR 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale8 D C LYR 246 D LYR 246 1_555 D N LEU 247 D LEU 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 E C SER 245 E SER 245 1_555 E N LYR 246 E LYR 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale10 E C LYR 246 E LYR 246 1_555 E N LEU 247 E LEU 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C20 H42' _chem_comp.formula_weight 282.547 _chem_comp.id LFA _chem_comp.mon_nstd_flag . _chem_comp.name EICOSANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LFA sing 194 n n C1 H11 LFA sing 195 n n C1 H12 LFA sing 196 n n C1 H13 LFA sing 197 n n C2 C3 LFA sing 198 n n C2 H21 LFA sing 199 n n C2 H22 LFA sing 200 n n C3 C4 LFA sing 201 n n C3 H31 LFA sing 202 n n C3 H32 LFA sing 203 n n C4 C5 LFA sing 204 n n C4 H41 LFA sing 205 n n C4 H42 LFA sing 206 n n C5 C6 LFA sing 207 n n C5 H51 LFA sing 208 n n C5 H52 LFA sing 209 n n C6 C7 LFA sing 210 n n C6 H61 LFA sing 211 n n C6 H62 LFA sing 212 n n C7 C8 LFA sing 213 n n C7 H71 LFA sing 214 n n C7 H72 LFA sing 215 n n C8 C9 LFA sing 216 n n C8 H81 LFA sing 217 n n C8 H82 LFA sing 218 n n C9 C10 LFA sing 219 n n C9 H91 LFA sing 220 n n C9 H92 LFA sing 221 n n C10 C11 LFA sing 222 n n C10 H101 LFA sing 223 n n C10 H102 LFA sing 224 n n C11 C12 LFA sing 225 n n C11 H111 LFA sing 226 n n C11 H112 LFA sing 227 n n C12 C13 LFA sing 228 n n C12 H121 LFA sing 229 n n C12 H122 LFA sing 230 n n C13 C14 LFA sing 231 n n C13 H131 LFA sing 232 n n C13 H132 LFA sing 233 n n C14 C15 LFA sing 234 n n C14 H141 LFA sing 235 n n C14 H142 LFA sing 236 n n C15 C16 LFA sing 237 n n C15 H151 LFA sing 238 n n C15 H152 LFA sing 239 n n C16 C17 LFA sing 240 n n C16 H161 LFA sing 241 n n C16 H162 LFA sing 242 n n C17 C18 LFA sing 243 n n C17 H171 LFA sing 244 n n C17 H172 LFA sing 245 n n C18 C19 LFA sing 246 n n C18 H181 LFA sing 247 n n C18 H182 LFA sing 248 n n C19 C20 LFA sing 249 n n C19 H191 LFA sing 250 n n C19 H192 LFA sing 251 n n C20 H201 LFA sing 252 n n C20 H202 LFA sing 253 n n C20 H203 LFA sing 254 n n # _atom_sites.entry_id 8QR0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 LMT A 1 301 303 LMT LMT . G 3 LFA A 1 302 304 LFA LFA . H 3 LFA A 1 303 305 LFA LFA . I 3 LFA A 1 304 306 LFA LFA . J 3 LFA A 1 305 307 LFA LFA . K 3 LFA A 1 306 302 LFA LFA . L 3 LFA A 1 307 308 LFA LFA . M 3 LFA A 1 308 302 LFA LFA . N 3 LFA B 1 301 303 LFA LFA . O 3 LFA B 1 302 304 LFA LFA . P 3 LFA B 1 303 305 LFA LFA . Q 3 LFA B 1 304 306 LFA LFA . R 3 LFA B 1 305 307 LFA LFA . S 2 LMT B 1 306 305 LMT LMT . T 3 LFA C 1 301 303 LFA LFA . U 3 LFA C 1 302 304 LFA LFA . V 2 LMT C 1 303 306 LMT LMT . W 3 LFA C 1 304 307 LFA LFA . X 3 LFA C 1 305 308 LFA LFA . Y 3 LFA C 1 306 309 LFA LFA . Z 3 LFA C 1 307 310 LFA LFA . AA 3 LFA C 1 308 308 LFA LFA . BA 3 LFA D 1 301 301 LFA LFA . CA 3 LFA D 1 302 301 LFA LFA . DA 3 LFA D 1 303 301 LFA LFA . EA 3 LFA D 1 304 302 LFA LFA . FA 2 LMT D 1 305 303 LMT LMT . GA 3 LFA D 1 306 304 LFA LFA . HA 3 LFA D 1 307 305 LFA LFA . IA 3 LFA D 1 308 306 LFA LFA . JA 3 LFA D 1 309 307 LFA LFA . KA 3 LFA D 1 310 307 LFA LFA . LA 3 LFA E 1 301 302 LFA LFA . MA 3 LFA E 1 302 308 LFA LFA . NA 3 LFA E 1 303 301 LFA LFA . OA 3 LFA E 1 304 301 LFA LFA . PA 2 LMT E 1 305 302 LMT LMT . QA 3 LFA E 1 306 303 LFA LFA . RA 3 LFA E 1 307 304 LFA LFA . SA 3 LFA E 1 308 305 LFA LFA . TA 3 LFA E 1 309 306 LFA LFA . UA 4 HOH A 1 401 102 HOH HOH . UA 4 HOH A 2 402 84 HOH HOH . UA 4 HOH A 3 403 7 HOH HOH . UA 4 HOH A 4 404 5 HOH HOH . UA 4 HOH A 5 405 103 HOH HOH . UA 4 HOH A 6 406 79 HOH HOH . UA 4 HOH A 7 407 121 HOH HOH . UA 4 HOH A 8 408 12 HOH HOH . UA 4 HOH A 9 409 107 HOH HOH . UA 4 HOH A 10 410 9 HOH HOH . UA 4 HOH A 11 411 4 HOH HOH . UA 4 HOH A 12 412 130 HOH HOH . UA 4 HOH A 13 413 15 HOH HOH . UA 4 HOH A 14 414 149 HOH HOH . UA 4 HOH A 15 415 72 HOH HOH . UA 4 HOH A 16 416 74 HOH HOH . UA 4 HOH A 17 417 3 HOH HOH . UA 4 HOH A 18 418 117 HOH HOH . UA 4 HOH A 19 419 165 HOH HOH . UA 4 HOH A 20 420 98 HOH HOH . UA 4 HOH A 21 421 114 HOH HOH . UA 4 HOH A 22 422 14 HOH HOH . UA 4 HOH A 23 423 143 HOH HOH . UA 4 HOH A 24 424 125 HOH HOH . UA 4 HOH A 25 425 108 HOH HOH . UA 4 HOH A 26 426 13 HOH HOH . UA 4 HOH A 27 427 129 HOH HOH . UA 4 HOH A 28 428 2 HOH HOH . UA 4 HOH A 29 429 161 HOH HOH . VA 4 HOH B 1 401 101 HOH HOH . VA 4 HOH B 2 402 152 HOH HOH . VA 4 HOH B 3 403 22 HOH HOH . VA 4 HOH B 4 404 1 HOH HOH . VA 4 HOH B 5 405 104 HOH HOH . VA 4 HOH B 6 406 122 HOH HOH . VA 4 HOH B 7 407 26 HOH HOH . VA 4 HOH B 8 408 80 HOH HOH . VA 4 HOH B 9 409 18 HOH HOH . VA 4 HOH B 10 410 111 HOH HOH . VA 4 HOH B 11 411 136 HOH HOH . VA 4 HOH B 12 412 131 HOH HOH . VA 4 HOH B 13 413 20 HOH HOH . VA 4 HOH B 14 414 73 HOH HOH . VA 4 HOH B 15 415 150 HOH HOH . VA 4 HOH B 16 416 75 HOH HOH . VA 4 HOH B 17 417 36 HOH HOH . VA 4 HOH B 18 418 118 HOH HOH . VA 4 HOH B 19 419 115 HOH HOH . VA 4 HOH B 20 420 99 HOH HOH . VA 4 HOH B 21 421 156 HOH HOH . VA 4 HOH B 22 422 21 HOH HOH . VA 4 HOH B 23 423 144 HOH HOH . VA 4 HOH B 24 424 126 HOH HOH . VA 4 HOH B 25 425 27 HOH HOH . VA 4 HOH B 26 426 112 HOH HOH . VA 4 HOH B 27 427 135 HOH HOH . VA 4 HOH B 28 428 157 HOH HOH . WA 4 HOH C 1 401 30 HOH HOH . WA 4 HOH C 2 402 153 HOH HOH . WA 4 HOH C 3 403 105 HOH HOH . WA 4 HOH C 4 404 31 HOH HOH . WA 4 HOH C 5 405 123 HOH HOH . WA 4 HOH C 6 406 81 HOH HOH . WA 4 HOH C 7 407 32 HOH HOH . WA 4 HOH C 8 408 29 HOH HOH . WA 4 HOH C 9 409 137 HOH HOH . WA 4 HOH C 10 410 65 HOH HOH . WA 4 HOH C 11 411 132 HOH HOH . WA 4 HOH C 12 412 151 HOH HOH . WA 4 HOH C 13 413 34 HOH HOH . WA 4 HOH C 14 414 76 HOH HOH . WA 4 HOH C 15 415 110 HOH HOH . WA 4 HOH C 16 416 69 HOH HOH . WA 4 HOH C 17 417 61 HOH HOH . WA 4 HOH C 18 418 119 HOH HOH . WA 4 HOH C 19 419 100 HOH HOH . WA 4 HOH C 20 420 116 HOH HOH . WA 4 HOH C 21 421 162 HOH HOH . WA 4 HOH C 22 422 28 HOH HOH . WA 4 HOH C 23 423 145 HOH HOH . WA 4 HOH C 24 424 127 HOH HOH . WA 4 HOH C 25 425 63 HOH HOH . WA 4 HOH C 26 426 109 HOH HOH . WA 4 HOH C 27 427 138 HOH HOH . WA 4 HOH C 28 428 66 HOH HOH . WA 4 HOH C 29 429 67 HOH HOH . WA 4 HOH C 30 430 158 HOH HOH . XA 4 HOH D 1 401 85 HOH HOH . XA 4 HOH D 2 402 154 HOH HOH . XA 4 HOH D 3 403 41 HOH HOH . XA 4 HOH D 4 404 92 HOH HOH . XA 4 HOH D 5 405 42 HOH HOH . XA 4 HOH D 6 406 86 HOH HOH . XA 4 HOH D 7 407 82 HOH HOH . XA 4 HOH D 8 408 60 HOH HOH . XA 4 HOH D 9 409 37 HOH HOH . XA 4 HOH D 10 410 139 HOH HOH . XA 4 HOH D 11 411 91 HOH HOH . XA 4 HOH D 12 412 133 HOH HOH . XA 4 HOH D 13 413 77 HOH HOH . XA 4 HOH D 14 414 39 HOH HOH . XA 4 HOH D 15 415 70 HOH HOH . XA 4 HOH D 16 416 93 HOH HOH . XA 4 HOH D 17 417 88 HOH HOH . XA 4 HOH D 18 418 62 HOH HOH . XA 4 HOH D 19 419 87 HOH HOH . XA 4 HOH D 20 420 163 HOH HOH . XA 4 HOH D 21 421 89 HOH HOH . XA 4 HOH D 22 422 40 HOH HOH . XA 4 HOH D 23 423 146 HOH HOH . XA 4 HOH D 24 424 128 HOH HOH . XA 4 HOH D 25 425 90 HOH HOH . XA 4 HOH D 26 426 64 HOH HOH . XA 4 HOH D 27 427 140 HOH HOH . XA 4 HOH D 28 428 68 HOH HOH . XA 4 HOH D 29 429 159 HOH HOH . YA 4 HOH E 1 401 52 HOH HOH . YA 4 HOH E 2 402 155 HOH HOH . YA 4 HOH E 3 403 94 HOH HOH . YA 4 HOH E 4 404 106 HOH HOH . YA 4 HOH E 5 405 47 HOH HOH . YA 4 HOH E 6 406 83 HOH HOH . YA 4 HOH E 7 407 53 HOH HOH . YA 4 HOH E 8 408 120 HOH HOH . YA 4 HOH E 9 409 142 HOH HOH . YA 4 HOH E 10 410 95 HOH HOH . YA 4 HOH E 11 411 48 HOH HOH . YA 4 HOH E 12 412 55 HOH HOH . YA 4 HOH E 13 413 46 HOH HOH . YA 4 HOH E 14 414 134 HOH HOH . YA 4 HOH E 15 415 148 HOH HOH . YA 4 HOH E 16 416 78 HOH HOH . YA 4 HOH E 17 417 71 HOH HOH . YA 4 HOH E 18 418 45 HOH HOH . YA 4 HOH E 19 419 49 HOH HOH . YA 4 HOH E 20 420 97 HOH HOH . YA 4 HOH E 21 421 96 HOH HOH . YA 4 HOH E 22 422 164 HOH HOH . YA 4 HOH E 23 423 147 HOH HOH . YA 4 HOH E 24 424 124 HOH HOH . YA 4 HOH E 25 425 54 HOH HOH . YA 4 HOH E 26 426 113 HOH HOH . YA 4 HOH E 27 427 141 HOH HOH . YA 4 HOH E 28 428 6 HOH HOH . YA 4 HOH E 29 429 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 LFA . . . X 3 125.837 164.194 114.655 1 112.91 ? C7 LFA 305 C 1 HETATM 2 C C8 LFA . . . X 3 125.137 163.648 115.895 1 100.15 ? C8 LFA 305 C 1 HETATM 3 C C9 LFA . . . X 3 125.227 162.143 116.028 1 90.59 ? C9 LFA 305 C 1 HETATM 4 C C10 LFA . . . X 3 124.555 161.59 117.253 1 76.5 ? C10 LFA 305 C 1 HETATM 5 C C11 LFA . . . X 3 124.35 160.086 117.211 1 62.63 ? C11 LFA 305 C 1 HETATM 6 C C12 LFA . . . X 3 123.99 159.519 118.557 1 58.31 ? C12 LFA 305 C 1 HETATM 7 C C13 LFA . . . X 3 124.032 158.025 118.681 1 50.17 ? C13 LFA 305 C 1 HETATM 8 C C14 LFA . . . X 3 124.154 157.587 120.114 1 43.81 ? C14 LFA 305 C 1 HETATM 9 C C15 LFA . . . X 3 123.946 156.112 120.37 1 38.99 ? C15 LFA 305 C 1 HETATM 10 C C16 LFA . . . X 3 124.215 155.779 121.777 1 33.9 ? C16 LFA 305 C 1 HETATM 11 C C17 LFA . . . X 3 123.916 154.408 122.196 1 31.29 ? C17 LFA 305 C 1 HETATM 12 C C18 LFA . . . X 3 123.908 154.283 123.669 1 34.33 ? C18 LFA 305 C 1 HETATM 13 C C19 LFA . . . X 3 123.614 152.933 124.221 1 45.33 ? C19 LFA 305 C 1 HETATM 14 C C20 LFA . . . X 3 123.504 152.944 125.76 1 54.56 ? C20 LFA 305 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 375 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #