data_8QRG # _model_server_result.job_id rI9zo0Y-JKOTXBixBaQ--g _model_server_result.datetime_utc '2025-08-29 10:43:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qrg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":303}' # _entry.id 8QRG # _exptl.entry_id 8QRG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QRG _cell.length_a 81.514 _cell.length_b 104.647 _cell.length_c 110.014 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QRG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 E CYS 336 1_555 A SG CYS 35 E CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 53 E CYS 379 1_555 A SG CYS 106 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 154 E CYS 480 1_555 A SG CYS 162 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf4 B SG CYS 22 A CYS 22 1_555 B SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 C SG CYS 22 H CYS 22 1_555 C SG CYS 95 H CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf6 C SG CYS 145 H CYS 145 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf7 C SG CYS 221 H CYS 221 1_555 D SG CYS 214 L CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 D SG CYS 23 L CYS 23 1_555 D SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf9 D SG CYS 134 L CYS 134 1_555 D SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A ND2 ASN 17 E ASN 343 1_555 E C1 NAG . E NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8QRG _atom_sites.fract_transf_matrix[1][1] 0.012268 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00909 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG E 1 601 601 NAG NAG . F 6 GOL E 1 602 602 GOL GOL . G 6 GOL E 1 603 304 GOL GOL . H 6 GOL A 1 201 201 GOL GOL . I 6 GOL L 1 301 301 GOL GOL . J 6 GOL L 1 302 302 GOL GOL . K 6 GOL L 1 303 303 GOL GOL . L 7 HOH E 1 701 142 HOH HOH . L 7 HOH E 2 702 4 HOH HOH . L 7 HOH E 3 703 8 HOH HOH . L 7 HOH E 4 704 7 HOH HOH . L 7 HOH E 5 705 5 HOH HOH . L 7 HOH E 6 706 22 HOH HOH . L 7 HOH E 7 707 49 HOH HOH . L 7 HOH E 8 708 1 HOH HOH . L 7 HOH E 9 709 9 HOH HOH . L 7 HOH E 10 710 183 HOH HOH . L 7 HOH E 11 711 55 HOH HOH . L 7 HOH E 12 712 57 HOH HOH . L 7 HOH E 13 713 113 HOH HOH . L 7 HOH E 14 714 38 HOH HOH . L 7 HOH E 15 715 13 HOH HOH . L 7 HOH E 16 716 10 HOH HOH . L 7 HOH E 17 717 152 HOH HOH . L 7 HOH E 18 718 185 HOH HOH . L 7 HOH E 19 719 70 HOH HOH . L 7 HOH E 20 720 103 HOH HOH . L 7 HOH E 21 721 20 HOH HOH . L 7 HOH E 22 722 41 HOH HOH . L 7 HOH E 23 723 72 HOH HOH . L 7 HOH E 24 724 150 HOH HOH . L 7 HOH E 25 725 180 HOH HOH . L 7 HOH E 26 726 60 HOH HOH . L 7 HOH E 27 727 96 HOH HOH . L 7 HOH E 28 728 162 HOH HOH . L 7 HOH E 29 729 97 HOH HOH . L 7 HOH E 30 730 59 HOH HOH . L 7 HOH E 31 731 94 HOH HOH . L 7 HOH E 32 732 85 HOH HOH . L 7 HOH E 33 733 117 HOH HOH . L 7 HOH E 34 734 160 HOH HOH . L 7 HOH E 35 735 24 HOH HOH . L 7 HOH E 36 736 39 HOH HOH . L 7 HOH E 37 737 179 HOH HOH . L 7 HOH E 38 738 67 HOH HOH . L 7 HOH E 39 739 111 HOH HOH . L 7 HOH E 40 740 182 HOH HOH . L 7 HOH E 41 741 175 HOH HOH . L 7 HOH E 42 742 184 HOH HOH . L 7 HOH E 43 743 31 HOH HOH . L 7 HOH E 44 744 78 HOH HOH . L 7 HOH E 45 745 46 HOH HOH . L 7 HOH E 46 746 62 HOH HOH . L 7 HOH E 47 747 164 HOH HOH . L 7 HOH E 48 748 64 HOH HOH . L 7 HOH E 49 749 3 HOH HOH . L 7 HOH E 50 750 102 HOH HOH . L 7 HOH E 51 751 120 HOH HOH . L 7 HOH E 52 752 104 HOH HOH . L 7 HOH E 53 753 167 HOH HOH . L 7 HOH E 54 754 127 HOH HOH . L 7 HOH E 55 755 174 HOH HOH . L 7 HOH E 56 756 124 HOH HOH . L 7 HOH E 57 757 154 HOH HOH . L 7 HOH E 58 758 73 HOH HOH . L 7 HOH E 59 759 109 HOH HOH . L 7 HOH E 60 760 170 HOH HOH . L 7 HOH E 61 761 181 HOH HOH . L 7 HOH E 62 762 74 HOH HOH . L 7 HOH E 63 763 118 HOH HOH . L 7 HOH E 64 764 106 HOH HOH . L 7 HOH E 65 765 23 HOH HOH . L 7 HOH E 66 766 146 HOH HOH . L 7 HOH E 67 767 173 HOH HOH . L 7 HOH E 68 768 33 HOH HOH . L 7 HOH E 69 769 108 HOH HOH . M 7 HOH A 1 301 128 HOH HOH . M 7 HOH A 2 302 52 HOH HOH . M 7 HOH A 3 303 114 HOH HOH . M 7 HOH A 4 304 178 HOH HOH . M 7 HOH A 5 305 112 HOH HOH . N 7 HOH H 1 301 40 HOH HOH . N 7 HOH H 2 302 44 HOH HOH . N 7 HOH H 3 303 43 HOH HOH . N 7 HOH H 4 304 30 HOH HOH . N 7 HOH H 5 305 6 HOH HOH . N 7 HOH H 6 306 169 HOH HOH . N 7 HOH H 7 307 77 HOH HOH . N 7 HOH H 8 308 2 HOH HOH . N 7 HOH H 9 309 86 HOH HOH . N 7 HOH H 10 310 42 HOH HOH . N 7 HOH H 11 311 17 HOH HOH . N 7 HOH H 12 312 135 HOH HOH . N 7 HOH H 13 313 32 HOH HOH . N 7 HOH H 14 314 37 HOH HOH . N 7 HOH H 15 315 71 HOH HOH . N 7 HOH H 16 316 51 HOH HOH . N 7 HOH H 17 317 61 HOH HOH . N 7 HOH H 18 318 27 HOH HOH . N 7 HOH H 19 319 50 HOH HOH . N 7 HOH H 20 320 93 HOH HOH . N 7 HOH H 21 321 189 HOH HOH . N 7 HOH H 22 322 65 HOH HOH . N 7 HOH H 23 323 137 HOH HOH . N 7 HOH H 24 324 145 HOH HOH . N 7 HOH H 25 325 56 HOH HOH . N 7 HOH H 26 326 101 HOH HOH . N 7 HOH H 27 327 69 HOH HOH . N 7 HOH H 28 328 81 HOH HOH . N 7 HOH H 29 329 95 HOH HOH . N 7 HOH H 30 330 79 HOH HOH . N 7 HOH H 31 331 16 HOH HOH . N 7 HOH H 32 332 144 HOH HOH . N 7 HOH H 33 333 157 HOH HOH . N 7 HOH H 34 334 11 HOH HOH . N 7 HOH H 35 335 139 HOH HOH . N 7 HOH H 36 336 45 HOH HOH . N 7 HOH H 37 337 29 HOH HOH . N 7 HOH H 38 338 88 HOH HOH . N 7 HOH H 39 339 48 HOH HOH . N 7 HOH H 40 340 134 HOH HOH . N 7 HOH H 41 341 149 HOH HOH . N 7 HOH H 42 342 138 HOH HOH . N 7 HOH H 43 343 80 HOH HOH . N 7 HOH H 44 344 83 HOH HOH . N 7 HOH H 45 345 166 HOH HOH . N 7 HOH H 46 346 159 HOH HOH . N 7 HOH H 47 347 151 HOH HOH . N 7 HOH H 48 348 176 HOH HOH . N 7 HOH H 49 349 125 HOH HOH . N 7 HOH H 50 350 133 HOH HOH . N 7 HOH H 51 351 58 HOH HOH . N 7 HOH H 52 352 148 HOH HOH . N 7 HOH H 53 353 12 HOH HOH . N 7 HOH H 54 354 75 HOH HOH . N 7 HOH H 55 355 105 HOH HOH . N 7 HOH H 56 356 92 HOH HOH . N 7 HOH H 57 357 190 HOH HOH . N 7 HOH H 58 358 168 HOH HOH . N 7 HOH H 59 359 53 HOH HOH . N 7 HOH H 60 360 165 HOH HOH . O 7 HOH L 1 401 158 HOH HOH . O 7 HOH L 2 402 143 HOH HOH . O 7 HOH L 3 403 87 HOH HOH . O 7 HOH L 4 404 121 HOH HOH . O 7 HOH L 5 405 191 HOH HOH . O 7 HOH L 6 406 25 HOH HOH . O 7 HOH L 7 407 82 HOH HOH . O 7 HOH L 8 408 66 HOH HOH . O 7 HOH L 9 409 14 HOH HOH . O 7 HOH L 10 410 186 HOH HOH . O 7 HOH L 11 411 63 HOH HOH . O 7 HOH L 12 412 187 HOH HOH . O 7 HOH L 13 413 161 HOH HOH . O 7 HOH L 14 414 107 HOH HOH . O 7 HOH L 15 415 89 HOH HOH . O 7 HOH L 16 416 54 HOH HOH . O 7 HOH L 17 417 130 HOH HOH . O 7 HOH L 18 418 47 HOH HOH . O 7 HOH L 19 419 68 HOH HOH . O 7 HOH L 20 420 99 HOH HOH . O 7 HOH L 21 421 147 HOH HOH . O 7 HOH L 22 422 188 HOH HOH . O 7 HOH L 23 423 15 HOH HOH . O 7 HOH L 24 424 34 HOH HOH . O 7 HOH L 25 425 140 HOH HOH . O 7 HOH L 26 426 153 HOH HOH . O 7 HOH L 27 427 132 HOH HOH . O 7 HOH L 28 428 91 HOH HOH . O 7 HOH L 29 429 28 HOH HOH . O 7 HOH L 30 430 36 HOH HOH . O 7 HOH L 31 431 90 HOH HOH . O 7 HOH L 32 432 21 HOH HOH . O 7 HOH L 33 433 98 HOH HOH . O 7 HOH L 34 434 122 HOH HOH . O 7 HOH L 35 435 18 HOH HOH . O 7 HOH L 36 436 172 HOH HOH . O 7 HOH L 37 437 26 HOH HOH . O 7 HOH L 38 438 100 HOH HOH . O 7 HOH L 39 439 171 HOH HOH . O 7 HOH L 40 440 76 HOH HOH . O 7 HOH L 41 441 19 HOH HOH . O 7 HOH L 42 442 123 HOH HOH . O 7 HOH L 43 443 155 HOH HOH . O 7 HOH L 44 444 35 HOH HOH . O 7 HOH L 45 445 131 HOH HOH . O 7 HOH L 46 446 129 HOH HOH . O 7 HOH L 47 447 115 HOH HOH . O 7 HOH L 48 448 116 HOH HOH . O 7 HOH L 49 449 141 HOH HOH . O 7 HOH L 50 450 177 HOH HOH . O 7 HOH L 51 451 156 HOH HOH . O 7 HOH L 52 452 136 HOH HOH . O 7 HOH L 53 453 163 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 6 59.892 -18.288 35.452 1 74.06 ? C1 GOL 303 L 1 HETATM 2 O O1 GOL . . . K 6 60.342 -19.476 36.066 1 76.2 ? O1 GOL 303 L 1 HETATM 3 C C2 GOL . . . K 6 60.217 -17.089 36.419 1 73.3 ? C2 GOL 303 L 1 HETATM 4 O O2 GOL . . . K 6 60.608 -15.946 35.728 1 74.55 ? O2 GOL 303 L 1 HETATM 5 C C3 GOL . . . K 6 58.921 -16.86 37.268 1 71.88 ? C3 GOL 303 L 1 HETATM 6 O O3 GOL . . . K 6 59.036 -15.611 37.872 1 57.7 ? O3 GOL 303 L 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #