data_8QSK
#
_model_server_result.job_id            4WmlbJdq-ZpMFAhtkIcoQQ 
_model_server_result.datetime_utc      '2024-10-20 03:37:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8qsk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":604}' 
#
_entry.id    8QSK 
#
_exptl.entry_id    8QSK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8QSK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8QSK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 68 A CYS 68 1_555 A SG CYS 141 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 133 A CYS 133 1_555 A SG CYS 153 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 B SG CYS 68 C CYS 68 1_555 B SG CYS 141 C CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 133 C CYS 133 1_555 B SG CYS 153 C CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 140 A ASN 140 1_555 E C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale2 B ND2 ASN 140 C ASN 140 1_555 N C1 NAG . C NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 533 n n 
CBA CAB Y01 sing 534 n n 
CBA CAN Y01 sing 535 n n 
CAN CAJ Y01 sing 536 n n 
CAJ CAO Y01 sing 537 n n 
CAO CBB Y01 sing 538 n n 
CBB CAC Y01 sing 539 n n 
CBB CBE Y01 sing 540 n n 
CBE CAP Y01 sing 541 n n 
CBE CBI Y01 sing 542 n n 
CAP CAQ Y01 sing 543 n n 
CAQ CBG Y01 sing 544 n n 
CBG CBI Y01 sing 545 n n 
CBG CBD Y01 sing 546 n n 
CBI CAE Y01 sing 547 n n 
CBI CAU Y01 sing 548 n n 
CAU CAS Y01 sing 549 n n 
CAS CBF Y01 sing 550 n n 
CBF CBD Y01 sing 551 n n 
CBF CBH Y01 sing 552 n n 
CBD CAK Y01 sing 553 n n 
CAK CAI Y01 sing 554 n n 
CAI CAZ Y01 doub 555 n n 
CAZ CAV Y01 sing 556 n n 
CAZ CBH Y01 sing 557 n n 
CAV CBC Y01 sing 558 n n 
CBH CAD Y01 sing 559 n n 
CBH CAT Y01 sing 560 n n 
CAT CAR Y01 sing 561 n n 
CAR CBC Y01 sing 562 n n 
CBC OAW Y01 sing 563 n n 
OAW CAY Y01 sing 564 n n 
CAY OAG Y01 doub 565 n n 
CAY CAM Y01 sing 566 n n 
CAM CAL Y01 sing 567 n n 
CAL CAX Y01 sing 568 n n 
CAX OAH Y01 sing 569 n n 
CAX OAF Y01 doub 570 n n 
CAA HAA1 Y01 sing 571 n n 
CAA HAA2 Y01 sing 572 n n 
CAA HAA3 Y01 sing 573 n n 
CBA HBA Y01 sing 574 n n 
CAB HAB1 Y01 sing 575 n n 
CAB HAB2 Y01 sing 576 n n 
CAB HAB3 Y01 sing 577 n n 
CAN HAN1 Y01 sing 578 n n 
CAN HAN2 Y01 sing 579 n n 
CAJ HAJ1 Y01 sing 580 n n 
CAJ HAJ2 Y01 sing 581 n n 
CAO HAO1 Y01 sing 582 n n 
CAO HAO2 Y01 sing 583 n n 
CBB HBB Y01 sing 584 n n 
CAC HAC1 Y01 sing 585 n n 
CAC HAC2 Y01 sing 586 n n 
CAC HAC3 Y01 sing 587 n n 
CBE HBE Y01 sing 588 n n 
CAP HAP1 Y01 sing 589 n n 
CAP HAP2 Y01 sing 590 n n 
CAQ HAQ1 Y01 sing 591 n n 
CAQ HAQ2 Y01 sing 592 n n 
CBG HBG Y01 sing 593 n n 
CBD HBD Y01 sing 594 n n 
CAE HAE1 Y01 sing 595 n n 
CAE HAE2 Y01 sing 596 n n 
CAE HAE3 Y01 sing 597 n n 
CAU HAU1 Y01 sing 598 n n 
CAU HAU2 Y01 sing 599 n n 
CAS HAS1 Y01 sing 600 n n 
CAS HAS2 Y01 sing 601 n n 
CBF HBF Y01 sing 602 n n 
CAK HAK1 Y01 sing 603 n n 
CAK HAK2 Y01 sing 604 n n 
CAI HAI Y01 sing 605 n n 
CAV HAV1 Y01 sing 606 n n 
CAV HAV2 Y01 sing 607 n n 
CBC HBC Y01 sing 608 n n 
CAD HAD1 Y01 sing 609 n n 
CAD HAD2 Y01 sing 610 n n 
CAD HAD3 Y01 sing 611 n n 
CAT HAT1 Y01 sing 612 n n 
CAT HAT2 Y01 sing 613 n n 
CAR HAR1 Y01 sing 614 n n 
CAR HAR2 Y01 sing 615 n n 
CAM HAM1 Y01 sing 616 n n 
CAM HAM2 Y01 sing 617 n n 
CAL HAL1 Y01 sing 618 n n 
CAL HAL2 Y01 sing 619 n n 
OAH HAH Y01 sing 620 n n 
#
_atom_sites.entry_id                     8QSK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 Y01 A 1 601 601 Y01 Y01 . 
D 2 Y01 A 1 602 603 Y01 Y01 . 
E 3 NAG A 1 603 604 NAG NAG . 
F 2 Y01 A 1 604 605 Y01 Y01 . 
G 2 Y01 A 1 605 606 Y01 Y01 . 
H 2 Y01 A 1 606 607 Y01 Y01 . 
I 4 PGT A 1 607 609 PGT PGT . 
J 2 Y01 A 1 608 602 Y01 Y01 . 
K 2 Y01 C 1 601 602 Y01 Y01 . 
L 2 Y01 C 1 602 601 Y01 Y01 . 
M 2 Y01 C 1 603 603 Y01 Y01 . 
N 3 NAG C 1 604 604 NAG NAG . 
O 2 Y01 C 1 605 605 Y01 Y01 . 
P 2 Y01 C 1 606 606 Y01 Y01 . 
Q 2 Y01 C 1 607 607 Y01 Y01 . 
R 4 PGT C 1 608 609 PGT PGT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . F 2 118.642 141.801 129.243 1 118.76 ? CAA Y01 604 A 1 
HETATM 2 C CBA Y01 . . . F 2 117.948 141.8 130.602 1 118.81 ? CBA Y01 604 A 1 
HETATM 3 C CAB Y01 . . . F 2 116.851 142.86 130.641 1 113.97 ? CAB Y01 604 A 1 
HETATM 4 C CAN Y01 . . . F 2 118.932 142.019 131.752 1 114.04 ? CAN Y01 604 A 1 
HETATM 5 C CAJ Y01 . . . F 2 119.374 140.759 132.485 1 111.08 ? CAJ Y01 604 A 1 
HETATM 6 C CAO Y01 . . . F 2 118.391 140.346 133.579 1 109.31 ? CAO Y01 604 A 1 
HETATM 7 C CBB Y01 . . . F 2 117.738 141.49 134.372 1 112.54 ? CBB Y01 604 A 1 
HETATM 8 C CAC Y01 . . . F 2 116.221 141.344 134.269 1 115.82 ? CAC Y01 604 A 1 
HETATM 9 C CBE Y01 . . . F 2 118.331 141.524 135.799 1 120.08 ? CBE Y01 604 A 1 
HETATM 10 C CAP Y01 . . . F 2 119.787 142.074 135.767 1 124.83 ? CAP Y01 604 A 1 
HETATM 11 C CAQ Y01 . . . F 2 120.03 142.816 137.093 1 128.62 ? CAQ Y01 604 A 1 
HETATM 12 C CBG Y01 . . . F 2 118.874 142.323 137.949 1 126.81 ? CBG Y01 604 A 1 
HETATM 13 C CBI Y01 . . . F 2 117.678 142.308 136.981 1 125.05 ? CBI Y01 604 A 1 
HETATM 14 C CAE Y01 . . . F 2 117.297 143.737 136.575 1 129.34 ? CAE Y01 604 A 1 
HETATM 15 C CAU Y01 . . . F 2 116.529 141.609 137.72 1 117.33 ? CAU Y01 604 A 1 
HETATM 16 C CAS Y01 . . . F 2 116.268 142.165 139.123 1 121.42 ? CAS Y01 604 A 1 
HETATM 17 C CBF Y01 . . . F 2 117.522 142.199 140.002 1 122.91 ? CBF Y01 604 A 1 
HETATM 18 C CBD Y01 . . . F 2 118.633 142.985 139.295 1 126.83 ? CBD Y01 604 A 1 
HETATM 19 C CAK Y01 . . . F 2 119.925 142.998 140.109 1 127.3 ? CAK Y01 604 A 1 
HETATM 20 C CAI Y01 . . . F 2 119.731 142.974 141.589 1 132.13 ? CAI Y01 604 A 1 
HETATM 21 C CAZ Y01 . . . F 2 118.579 142.736 142.209 1 133.84 ? CAZ Y01 604 A 1 
HETATM 22 C CAV Y01 . . . F 2 118.544 142.667 143.714 1 134.87 ? CAV Y01 604 A 1 
HETATM 23 C CBH Y01 . . . F 2 117.258 142.653 141.461 1 128.95 ? CBH Y01 604 A 1 
HETATM 24 C CAD Y01 . . . F 2 116.573 144.027 141.523 1 124.29 ? CAD Y01 604 A 1 
HETATM 25 C CAT Y01 . . . F 2 116.352 141.589 142.124 1 130.27 ? CAT Y01 604 A 1 
HETATM 26 C CAR Y01 . . . F 2 116.322 141.595 143.647 1 132.39 ? CAR Y01 604 A 1 
HETATM 27 C CBC Y01 . . . F 2 117.733 141.466 144.175 1 135.08 ? CBC Y01 604 A 1 
HETATM 28 O OAW Y01 . . . F 2 117.666 141.402 145.609 1 143.57 ? OAW Y01 604 A 1 
HETATM 29 C CAY Y01 . . . F 2 118.1 140.309 146.234 1 150.36 ? CAY Y01 604 A 1 
HETATM 30 O OAG Y01 . . . F 2 118.761 139.453 145.697 1 148.04 ? OAG Y01 604 A 1 
HETATM 31 C CAM Y01 . . . F 2 117.649 140.292 147.67 1 155.68 ? CAM Y01 604 A 1 
HETATM 32 C CAL Y01 . . . F 2 116.149 140.143 147.828 1 156.27 ? CAL Y01 604 A 1 
HETATM 33 C CAX Y01 . . . F 2 115.565 140.803 149.091 1 161.61 ? CAX Y01 604 A 1 
HETATM 34 O OAH Y01 . . . F 2 116.179 140.574 150.153 1 159.97 ? OAH Y01 604 A 1 
HETATM 35 O OAF Y01 . . . F 2 114.541 141.502 148.962 1 162.78 ? OAF Y01 604 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           35 
#