data_8QSK # _model_server_result.job_id 5ZCtK5ezxRipUUsA18grYA _model_server_result.datetime_utc '2024-10-20 03:35:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qsk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":607}' # _entry.id 8QSK # _exptl.entry_id 8QSK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 751.023 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QSK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QSK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 68 A CYS 68 1_555 A SG CYS 141 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 133 A CYS 133 1_555 A SG CYS 153 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 68 C CYS 68 1_555 B SG CYS 141 C CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 133 C CYS 133 1_555 B SG CYS 153 C CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 140 A ASN 140 1_555 E C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 B ND2 ASN 140 C ASN 140 1_555 N C1 NAG . C NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C40 H79 O10 P' _chem_comp.formula_weight 751.023 _chem_comp.id PGT _chem_comp.mon_nstd_flag . _chem_comp.name '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PHOSPHATIDYLGLYCEROL;1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)](SODIUM SALT)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 PGT sing 265 n n C48 H481 PGT sing 266 n n C48 H482 PGT sing 267 n n C48 H483 PGT sing 268 n n C47 C46 PGT sing 269 n n C47 H471 PGT sing 270 n n C47 H472 PGT sing 271 n n C46 C45 PGT sing 272 n n C46 H461 PGT sing 273 n n C46 H462 PGT sing 274 n n C45 C44 PGT sing 275 n n C45 H451 PGT sing 276 n n C45 H452 PGT sing 277 n n C44 C43 PGT sing 278 n n C44 H441 PGT sing 279 n n C44 H442 PGT sing 280 n n C43 C42 PGT sing 281 n n C43 H431 PGT sing 282 n n C43 H432 PGT sing 283 n n C42 C41 PGT sing 284 n n C42 H421 PGT sing 285 n n C42 H422 PGT sing 286 n n C41 C40 PGT sing 287 n n C41 H411 PGT sing 288 n n C41 H412 PGT sing 289 n n C40 C39 PGT sing 290 n n C40 H401 PGT sing 291 n n C40 H402 PGT sing 292 n n C39 C38 PGT sing 293 n n C39 H391 PGT sing 294 n n C39 H392 PGT sing 295 n n C38 C37 PGT sing 296 n n C38 H381 PGT sing 297 n n C38 H382 PGT sing 298 n n C37 C36 PGT sing 299 n n C37 H371 PGT sing 300 n n C37 H372 PGT sing 301 n n C36 C35 PGT sing 302 n n C36 H361 PGT sing 303 n n C36 H362 PGT sing 304 n n C35 C34 PGT sing 305 n n C35 H351 PGT sing 306 n n C35 H352 PGT sing 307 n n C34 C33 PGT sing 308 n n C34 H341 PGT sing 309 n n C34 H342 PGT sing 310 n n C33 C32 PGT sing 311 n n C33 H331 PGT sing 312 n n C33 H332 PGT sing 313 n n C32 C31 PGT sing 314 n n C32 H321 PGT sing 315 n n C32 H322 PGT sing 316 n n C31 O31 PGT doub 317 n n C31 O2 PGT sing 318 n n O2 C2 PGT sing 319 n n C2 C1 PGT sing 320 n n C2 C3 PGT sing 321 n n C2 H2 PGT sing 322 n n C1 O3P PGT sing 323 n n C1 H11 PGT sing 324 n n C1 H12 PGT sing 325 n n O3P P PGT sing 326 n n P O1P PGT doub 327 n n P O2P PGT sing 328 n n P O4P PGT sing 329 n n O2P HO2P PGT sing 330 n n O4P C4 PGT sing 331 n n C4 C5 PGT sing 332 n n C4 H41 PGT sing 333 n n C4 H42 PGT sing 334 n n C5 O5 PGT sing 335 n n C5 C6 PGT sing 336 n n C5 H5 PGT sing 337 n n O5 HO5 PGT sing 338 n n C6 O6 PGT sing 339 n n C6 H61 PGT sing 340 n n C6 H62 PGT sing 341 n n O6 HO6 PGT sing 342 n n C3 O3 PGT sing 343 n n C3 H31 PGT sing 344 n n C3 H32 PGT sing 345 n n O3 C11 PGT sing 346 n n C11 O11 PGT doub 347 n n C11 C12 PGT sing 348 n n C12 C13 PGT sing 349 n n C12 H121 PGT sing 350 n n C12 H122 PGT sing 351 n n C13 C14 PGT sing 352 n n C13 H131 PGT sing 353 n n C13 H132 PGT sing 354 n n C14 C15 PGT sing 355 n n C14 H141 PGT sing 356 n n C14 H142 PGT sing 357 n n C15 C16 PGT sing 358 n n C15 H151 PGT sing 359 n n C15 H152 PGT sing 360 n n C16 C17 PGT sing 361 n n C16 H161 PGT sing 362 n n C16 H162 PGT sing 363 n n C17 C18 PGT sing 364 n n C17 H171 PGT sing 365 n n C17 H172 PGT sing 366 n n C18 C19 PGT sing 367 n n C18 H181 PGT sing 368 n n C18 H182 PGT sing 369 n n C19 C20 PGT sing 370 n n C19 H191 PGT sing 371 n n C19 H192 PGT sing 372 n n C20 C21 PGT sing 373 n n C20 H201 PGT sing 374 n n C20 H202 PGT sing 375 n n C21 C22 PGT sing 376 n n C21 H211 PGT sing 377 n n C21 H212 PGT sing 378 n n C22 C23 PGT sing 379 n n C22 H221 PGT sing 380 n n C22 H222 PGT sing 381 n n C23 C24 PGT sing 382 n n C23 H231 PGT sing 383 n n C23 H232 PGT sing 384 n n C24 C25 PGT sing 385 n n C24 H241 PGT sing 386 n n C24 H242 PGT sing 387 n n C25 C26 PGT sing 388 n n C25 H251 PGT sing 389 n n C25 H252 PGT sing 390 n n C26 H261 PGT sing 391 n n C26 H262 PGT sing 392 n n C26 H263 PGT sing 393 n n # _atom_sites.entry_id 8QSK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Y01 A 1 601 601 Y01 Y01 . D 2 Y01 A 1 602 603 Y01 Y01 . E 3 NAG A 1 603 604 NAG NAG . F 2 Y01 A 1 604 605 Y01 Y01 . G 2 Y01 A 1 605 606 Y01 Y01 . H 2 Y01 A 1 606 607 Y01 Y01 . I 4 PGT A 1 607 609 PGT PGT . J 2 Y01 A 1 608 602 Y01 Y01 . K 2 Y01 C 1 601 602 Y01 Y01 . L 2 Y01 C 1 602 601 Y01 Y01 . M 2 Y01 C 1 603 603 Y01 Y01 . N 3 NAG C 1 604 604 NAG NAG . O 2 Y01 C 1 605 605 Y01 Y01 . P 2 Y01 C 1 606 606 Y01 Y01 . Q 2 Y01 C 1 607 607 Y01 Y01 . R 4 PGT C 1 608 609 PGT PGT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C48 PGT . . . I 4 117.197 106.747 122.025 1 136.36 ? C48 PGT 607 A 1 HETATM 2 C C47 PGT . . . I 4 116.538 107.181 123.328 1 145.85 ? C47 PGT 607 A 1 HETATM 3 C C46 PGT . . . I 4 117.372 106.842 124.558 1 147.47 ? C46 PGT 607 A 1 HETATM 4 C C45 PGT . . . I 4 116.69 107.206 125.871 1 145.65 ? C45 PGT 607 A 1 HETATM 5 C C44 PGT . . . I 4 116.483 108.705 126.054 1 146.05 ? C44 PGT 607 A 1 HETATM 6 C C43 PGT . . . I 4 115.764 109.058 127.351 1 146.52 ? C43 PGT 607 A 1 HETATM 7 C C42 PGT . . . I 4 116.601 109.905 128.303 1 136.3 ? C42 PGT 607 A 1 HETATM 8 C C41 PGT . . . I 4 117.993 109.339 128.554 1 131.84 ? C41 PGT 607 A 1 HETATM 9 C C40 PGT . . . I 4 118.674 109.929 129.783 1 124.03 ? C40 PGT 607 A 1 HETATM 10 C C39 PGT . . . I 4 118.106 109.406 131.096 1 119.17 ? C39 PGT 607 A 1 HETATM 11 C C38 PGT . . . I 4 118.751 110.031 132.328 1 116.74 ? C38 PGT 607 A 1 HETATM 12 C C37 PGT . . . I 4 118.531 109.219 133.598 1 122.2 ? C37 PGT 607 A 1 HETATM 13 C C36 PGT . . . I 4 119.168 109.834 134.839 1 123.51 ? C36 PGT 607 A 1 HETATM 14 C C35 PGT . . . I 4 120.675 110.025 134.714 1 129.04 ? C35 PGT 607 A 1 HETATM 15 C C34 PGT . . . I 4 121.446 108.727 134.515 1 138.18 ? C34 PGT 607 A 1 HETATM 16 C C33 PGT . . . I 4 122.254 108.314 135.739 1 141.46 ? C33 PGT 607 A 1 HETATM 17 C C32 PGT . . . I 4 121.385 107.734 136.844 1 143.08 ? C32 PGT 607 A 1 HETATM 18 C C31 PGT . . . I 4 121.089 108.706 137.953 1 140.62 ? C31 PGT 607 A 1 HETATM 19 O O31 PGT . . . I 4 120.12 109.419 138.007 1 134.77 ? O31 PGT 607 A 1 HETATM 20 O O2 PGT . . . I 4 122.037 108.683 138.887 1 144.21 ? O2 PGT 607 A 1 HETATM 21 C C2 PGT . . . I 4 121.692 109.011 140.239 1 143.88 ? C2 PGT 607 A 1 HETATM 22 C C1 PGT . . . I 4 122.225 110.381 140.624 1 139.24 ? C1 PGT 607 A 1 HETATM 23 O O3P PGT . . . I 4 121.358 111.081 141.485 1 141.46 ? O3P PGT 607 A 1 HETATM 24 P P PGT . . . I 4 121.64 111.019 143.099 1 154.18 ? P PGT 607 A 1 HETATM 25 O O1P PGT . . . I 4 120.978 109.807 143.681 1 153.43 ? O1P PGT 607 A 1 HETATM 26 O O2P PGT . . . I 4 123.083 111.278 143.409 1 146.72 ? O2P PGT 607 A 1 HETATM 27 O O4P PGT . . . I 4 120.73 112.352 143.394 1 151.26 ? O4P PGT 607 A 1 HETATM 28 C C4 PGT . . . I 4 121.254 113.327 144.269 1 148.37 ? C4 PGT 607 A 1 HETATM 29 C C5 PGT . . . I 4 121.051 112.863 145.706 1 147.69 ? C5 PGT 607 A 1 HETATM 30 O O5 PGT . . . I 4 122.059 111.978 146.142 1 144.09 ? O5 PGT 607 A 1 HETATM 31 C C6 PGT . . . I 4 119.656 112.28 145.867 1 145.88 ? C6 PGT 607 A 1 HETATM 32 O O6 PGT . . . I 4 119.728 110.88 145.757 1 148.04 ? O6 PGT 607 A 1 HETATM 33 C C3 PGT . . . I 4 122.161 107.87 141.114 1 145.8 ? C3 PGT 607 A 1 HETATM 34 O O3 PGT . . . I 4 121.174 106.848 141.146 1 147.39 ? O3 PGT 607 A 1 HETATM 35 C C11 PGT . . . I 4 121.478 105.672 140.611 1 149.05 ? C11 PGT 607 A 1 HETATM 36 O O11 PGT . . . I 4 122.607 105.325 140.367 1 147.96 ? O11 PGT 607 A 1 HETATM 37 C C12 PGT . . . I 4 120.248 104.848 140.356 1 147.53 ? C12 PGT 607 A 1 HETATM 38 C C13 PGT . . . I 4 120.297 104.095 139.036 1 147.47 ? C13 PGT 607 A 1 HETATM 39 C C14 PGT . . . I 4 118.914 103.637 138.59 1 146.71 ? C14 PGT 607 A 1 HETATM 40 C C15 PGT . . . I 4 118.915 102.935 137.238 1 147.77 ? C15 PGT 607 A 1 HETATM 41 C C16 PGT . . . I 4 118.056 103.645 136.2 1 146.24 ? C16 PGT 607 A 1 HETATM 42 C C17 PGT . . . I 4 118.699 104.914 135.652 1 143.51 ? C17 PGT 607 A 1 HETATM 43 C C18 PGT . . . I 4 119.857 104.643 134.7 1 142.58 ? C18 PGT 607 A 1 HETATM 44 C C19 PGT . . . I 4 119.599 105.135 133.28 1 143.87 ? C19 PGT 607 A 1 HETATM 45 C C20 PGT . . . I 4 118.379 104.494 132.63 1 142.55 ? C20 PGT 607 A 1 HETATM 46 C C21 PGT . . . I 4 118.096 105.01 131.223 1 142.25 ? C21 PGT 607 A 1 HETATM 47 C C22 PGT . . . I 4 119.195 104.672 130.223 1 146.85 ? C22 PGT 607 A 1 HETATM 48 C C23 PGT . . . I 4 119.937 105.899 129.706 1 146.17 ? C23 PGT 607 A 1 HETATM 49 C C24 PGT . . . I 4 121.226 105.557 128.972 1 140.96 ? C24 PGT 607 A 1 HETATM 50 C C25 PGT . . . I 4 122.062 106.782 128.62 1 130.07 ? C25 PGT 607 A 1 HETATM 51 C C26 PGT . . . I 4 121.325 107.763 127.721 1 128.6 ? C26 PGT 607 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 51 #