data_8QSK
#
_model_server_result.job_id            MU6m5NfI-tnDobPbZn4kOg 
_model_server_result.datetime_utc      '2024-10-20 03:42:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8qsk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":608}' 
#
_entry.id    8QSK 
#
_exptl.entry_id    8QSK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              751.023 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8QSK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8QSK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 68 A CYS 68 1_555 A SG CYS 141 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 133 A CYS 133 1_555 A SG CYS 153 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 B SG CYS 68 C CYS 68 1_555 B SG CYS 141 C CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 133 C CYS 133 1_555 B SG CYS 153 C CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 140 A ASN 140 1_555 E C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale2 B ND2 ASN 140 C ASN 140 1_555 N C1 NAG . C NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
#
_chem_comp.formula           'C40 H79 O10 P' 
_chem_comp.formula_weight    751.023 
_chem_comp.id                PGT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PHOSPHATIDYLGLYCEROL;1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)](SODIUM SALT)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C48 C47 PGT sing 265 n n 
C48 H481 PGT sing 266 n n 
C48 H482 PGT sing 267 n n 
C48 H483 PGT sing 268 n n 
C47 C46 PGT sing 269 n n 
C47 H471 PGT sing 270 n n 
C47 H472 PGT sing 271 n n 
C46 C45 PGT sing 272 n n 
C46 H461 PGT sing 273 n n 
C46 H462 PGT sing 274 n n 
C45 C44 PGT sing 275 n n 
C45 H451 PGT sing 276 n n 
C45 H452 PGT sing 277 n n 
C44 C43 PGT sing 278 n n 
C44 H441 PGT sing 279 n n 
C44 H442 PGT sing 280 n n 
C43 C42 PGT sing 281 n n 
C43 H431 PGT sing 282 n n 
C43 H432 PGT sing 283 n n 
C42 C41 PGT sing 284 n n 
C42 H421 PGT sing 285 n n 
C42 H422 PGT sing 286 n n 
C41 C40 PGT sing 287 n n 
C41 H411 PGT sing 288 n n 
C41 H412 PGT sing 289 n n 
C40 C39 PGT sing 290 n n 
C40 H401 PGT sing 291 n n 
C40 H402 PGT sing 292 n n 
C39 C38 PGT sing 293 n n 
C39 H391 PGT sing 294 n n 
C39 H392 PGT sing 295 n n 
C38 C37 PGT sing 296 n n 
C38 H381 PGT sing 297 n n 
C38 H382 PGT sing 298 n n 
C37 C36 PGT sing 299 n n 
C37 H371 PGT sing 300 n n 
C37 H372 PGT sing 301 n n 
C36 C35 PGT sing 302 n n 
C36 H361 PGT sing 303 n n 
C36 H362 PGT sing 304 n n 
C35 C34 PGT sing 305 n n 
C35 H351 PGT sing 306 n n 
C35 H352 PGT sing 307 n n 
C34 C33 PGT sing 308 n n 
C34 H341 PGT sing 309 n n 
C34 H342 PGT sing 310 n n 
C33 C32 PGT sing 311 n n 
C33 H331 PGT sing 312 n n 
C33 H332 PGT sing 313 n n 
C32 C31 PGT sing 314 n n 
C32 H321 PGT sing 315 n n 
C32 H322 PGT sing 316 n n 
C31 O31 PGT doub 317 n n 
C31 O2 PGT sing 318 n n 
O2 C2 PGT sing 319 n n 
C2 C1 PGT sing 320 n n 
C2 C3 PGT sing 321 n n 
C2 H2 PGT sing 322 n n 
C1 O3P PGT sing 323 n n 
C1 H11 PGT sing 324 n n 
C1 H12 PGT sing 325 n n 
O3P P PGT sing 326 n n 
P O1P PGT doub 327 n n 
P O2P PGT sing 328 n n 
P O4P PGT sing 329 n n 
O2P HO2P PGT sing 330 n n 
O4P C4 PGT sing 331 n n 
C4 C5 PGT sing 332 n n 
C4 H41 PGT sing 333 n n 
C4 H42 PGT sing 334 n n 
C5 O5 PGT sing 335 n n 
C5 C6 PGT sing 336 n n 
C5 H5 PGT sing 337 n n 
O5 HO5 PGT sing 338 n n 
C6 O6 PGT sing 339 n n 
C6 H61 PGT sing 340 n n 
C6 H62 PGT sing 341 n n 
O6 HO6 PGT sing 342 n n 
C3 O3 PGT sing 343 n n 
C3 H31 PGT sing 344 n n 
C3 H32 PGT sing 345 n n 
O3 C11 PGT sing 346 n n 
C11 O11 PGT doub 347 n n 
C11 C12 PGT sing 348 n n 
C12 C13 PGT sing 349 n n 
C12 H121 PGT sing 350 n n 
C12 H122 PGT sing 351 n n 
C13 C14 PGT sing 352 n n 
C13 H131 PGT sing 353 n n 
C13 H132 PGT sing 354 n n 
C14 C15 PGT sing 355 n n 
C14 H141 PGT sing 356 n n 
C14 H142 PGT sing 357 n n 
C15 C16 PGT sing 358 n n 
C15 H151 PGT sing 359 n n 
C15 H152 PGT sing 360 n n 
C16 C17 PGT sing 361 n n 
C16 H161 PGT sing 362 n n 
C16 H162 PGT sing 363 n n 
C17 C18 PGT sing 364 n n 
C17 H171 PGT sing 365 n n 
C17 H172 PGT sing 366 n n 
C18 C19 PGT sing 367 n n 
C18 H181 PGT sing 368 n n 
C18 H182 PGT sing 369 n n 
C19 C20 PGT sing 370 n n 
C19 H191 PGT sing 371 n n 
C19 H192 PGT sing 372 n n 
C20 C21 PGT sing 373 n n 
C20 H201 PGT sing 374 n n 
C20 H202 PGT sing 375 n n 
C21 C22 PGT sing 376 n n 
C21 H211 PGT sing 377 n n 
C21 H212 PGT sing 378 n n 
C22 C23 PGT sing 379 n n 
C22 H221 PGT sing 380 n n 
C22 H222 PGT sing 381 n n 
C23 C24 PGT sing 382 n n 
C23 H231 PGT sing 383 n n 
C23 H232 PGT sing 384 n n 
C24 C25 PGT sing 385 n n 
C24 H241 PGT sing 386 n n 
C24 H242 PGT sing 387 n n 
C25 C26 PGT sing 388 n n 
C25 H251 PGT sing 389 n n 
C25 H252 PGT sing 390 n n 
C26 H261 PGT sing 391 n n 
C26 H262 PGT sing 392 n n 
C26 H263 PGT sing 393 n n 
#
_atom_sites.entry_id                     8QSK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 Y01 A 1 601 601 Y01 Y01 . 
D 2 Y01 A 1 602 603 Y01 Y01 . 
E 3 NAG A 1 603 604 NAG NAG . 
F 2 Y01 A 1 604 605 Y01 Y01 . 
G 2 Y01 A 1 605 606 Y01 Y01 . 
H 2 Y01 A 1 606 607 Y01 Y01 . 
I 4 PGT A 1 607 609 PGT PGT . 
J 2 Y01 A 1 608 602 Y01 Y01 . 
K 2 Y01 C 1 601 602 Y01 Y01 . 
L 2 Y01 C 1 602 601 Y01 Y01 . 
M 2 Y01 C 1 603 603 Y01 Y01 . 
N 3 NAG C 1 604 604 NAG NAG . 
O 2 Y01 C 1 605 605 Y01 Y01 . 
P 2 Y01 C 1 606 606 Y01 Y01 . 
Q 2 Y01 C 1 607 607 Y01 Y01 . 
R 4 PGT C 1 608 609 PGT PGT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C48 PGT . . . R 4 133.567 144.034 122.011 1 136.49 ? C48 PGT 608 C 1 
HETATM 2 C C47 PGT . . . R 4 134.228 143.604 123.314 1 145.72 ? C47 PGT 608 C 1 
HETATM 3 C C46 PGT . . . R 4 133.395 143.943 124.544 1 146.98 ? C46 PGT 608 C 1 
HETATM 4 C C45 PGT . . . R 4 134.079 143.583 125.857 1 147.45 ? C45 PGT 608 C 1 
HETATM 5 C C44 PGT . . . R 4 134.29 142.085 126.043 1 147.56 ? C44 PGT 608 C 1 
HETATM 6 C C43 PGT . . . R 4 135.012 141.736 127.339 1 147.17 ? C43 PGT 608 C 1 
HETATM 7 C C42 PGT . . . R 4 134.18 140.886 128.292 1 136.08 ? C42 PGT 608 C 1 
HETATM 8 C C41 PGT . . . R 4 132.785 141.446 128.542 1 132.87 ? C41 PGT 608 C 1 
HETATM 9 C C40 PGT . . . R 4 132.109 140.859 129.776 1 124.46 ? C40 PGT 608 C 1 
HETATM 10 C C39 PGT . . . R 4 132.68 141.388 131.085 1 119.54 ? C39 PGT 608 C 1 
HETATM 11 C C38 PGT . . . R 4 132.043 140.763 132.321 1 118.76 ? C38 PGT 608 C 1 
HETATM 12 C C37 PGT . . . R 4 132.261 141.583 133.587 1 123.54 ? C37 PGT 608 C 1 
HETATM 13 C C36 PGT . . . R 4 131.63 140.97 134.832 1 125.34 ? C36 PGT 608 C 1 
HETATM 14 C C35 PGT . . . R 4 130.125 140.769 134.712 1 129.96 ? C35 PGT 608 C 1 
HETATM 15 C C34 PGT . . . R 4 129.344 142.062 134.512 1 137.34 ? C34 PGT 608 C 1 
HETATM 16 C C33 PGT . . . R 4 128.533 142.47 135.736 1 139.41 ? C33 PGT 608 C 1 
HETATM 17 C C32 PGT . . . R 4 129.398 143.057 136.839 1 142.22 ? C32 PGT 608 C 1 
HETATM 18 C C31 PGT . . . R 4 129.701 142.089 137.95 1 140.43 ? C31 PGT 608 C 1 
HETATM 19 O O31 PGT . . . R 4 130.674 141.381 138.003 1 135.15 ? O31 PGT 608 C 1 
HETATM 20 O O2 PGT . . . R 4 128.755 142.11 138.886 1 144.06 ? O2 PGT 608 C 1 
HETATM 21 C C2 PGT . . . R 4 129.105 141.783 140.237 1 144.12 ? C2 PGT 608 C 1 
HETATM 22 C C1 PGT . . . R 4 128.582 140.408 140.621 1 140.32 ? C1 PGT 608 C 1 
HETATM 23 O O3P PGT . . . R 4 129.447 139.721 141.494 1 142.53 ? O3P PGT 608 C 1 
HETATM 24 P P PGT . . . R 4 129.119 139.747 143.1 1 153.21 ? P PGT 608 C 1 
HETATM 25 O O1P PGT . . . R 4 129.736 140.963 143.723 1 152.19 ? O1P PGT 608 C 1 
HETATM 26 O O2P PGT . . . R 4 127.674 139.449 143.365 1 145.74 ? O2P PGT 608 C 1 
HETATM 27 O O4P PGT . . . R 4 130.051 138.429 143.397 1 151.66 ? O4P PGT 608 C 1 
HETATM 28 C C4 PGT . . . R 4 129.545 137.447 144.274 1 148.39 ? C4 PGT 608 C 1 
HETATM 29 C C5 PGT . . . R 4 129.741 137.915 145.71 1 147.29 ? C5 PGT 608 C 1 
HETATM 30 O O5 PGT . . . R 4 128.717 138.781 146.146 1 145.15 ? O5 PGT 608 C 1 
HETATM 31 C C6 PGT . . . R 4 131.125 138.525 145.868 1 143.98 ? C6 PGT 608 C 1 
HETATM 32 O O6 PGT . . . R 4 131.028 139.922 145.749 1 145.71 ? O6 PGT 608 C 1 
HETATM 33 C C3 PGT . . . R 4 128.627 142.918 141.114 1 146.03 ? C3 PGT 608 C 1 
HETATM 34 O O3 PGT . . . R 4 129.608 143.946 141.151 1 147.38 ? O3 PGT 608 C 1 
HETATM 35 C C11 PGT . . . R 4 129.301 145.118 140.61 1 149.37 ? C11 PGT 608 C 1 
HETATM 36 O O11 PGT . . . R 4 128.17 145.461 140.363 1 149.32 ? O11 PGT 608 C 1 
HETATM 37 C C12 PGT . . . R 4 130.527 145.945 140.351 1 147.13 ? C12 PGT 608 C 1 
HETATM 38 C C13 PGT . . . R 4 130.477 146.69 139.026 1 146.6 ? C13 PGT 608 C 1 
HETATM 39 C C14 PGT . . . R 4 131.858 147.146 138.575 1 146.29 ? C14 PGT 608 C 1 
HETATM 40 C C15 PGT . . . R 4 131.855 147.847 137.223 1 147.06 ? C15 PGT 608 C 1 
HETATM 41 C C16 PGT . . . R 4 132.713 147.136 136.185 1 145.53 ? C16 PGT 608 C 1 
HETATM 42 C C17 PGT . . . R 4 132.068 145.868 135.637 1 142.96 ? C17 PGT 608 C 1 
HETATM 43 C C18 PGT . . . R 4 130.91 146.14 134.686 1 141.16 ? C18 PGT 608 C 1 
HETATM 44 C C19 PGT . . . R 4 131.167 145.648 133.266 1 140.69 ? C19 PGT 608 C 1 
HETATM 45 C C20 PGT . . . R 4 132.385 146.291 132.614 1 138.36 ? C20 PGT 608 C 1 
HETATM 46 C C21 PGT . . . R 4 132.667 145.776 131.208 1 136.75 ? C21 PGT 608 C 1 
HETATM 47 C C22 PGT . . . R 4 131.567 146.112 130.208 1 140.48 ? C22 PGT 608 C 1 
HETATM 48 C C23 PGT . . . R 4 130.826 144.883 129.692 1 139.93 ? C23 PGT 608 C 1 
HETATM 49 C C24 PGT . . . R 4 129.537 145.223 128.957 1 135.35 ? C24 PGT 608 C 1 
HETATM 50 C C25 PGT . . . R 4 128.703 143.996 128.605 1 125.66 ? C25 PGT 608 C 1 
HETATM 51 C C26 PGT . . . R 4 129.444 143.016 127.706 1 125.11 ? C26 PGT 608 C 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           51 
#