data_8QT0 # _model_server_result.job_id 7Va6Pv1mJ0pLjOCTcXBENQ _model_server_result.datetime_utc '2024-11-07 12:50:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qt0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 8QT0 # _exptl.entry_id 8QT0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.28 _cell.angle_gamma 90 _cell.entry_id 8QT0 _cell.length_a 36.144 _cell.length_b 74.318 _cell.length_c 56.052 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QT0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LYS 6 B LYS 6 1_555 B N NIY 7 B NIY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 B NZ LYS 6 B LYS 6 1_555 H C11 WWE . B WWE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B C NIY 7 B NIY 7 1_555 B N GLY 8 B GLY 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 B C GLY 9 B GLY 9 1_555 B N NH2 10 B NH2 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A SG CYS 143 A CYS 195 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc2 A SG CYS 148 A CYS 200 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc3 A SG CYS 169 A CYS 221 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc4 A SG CYS 172 A CYS 224 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8QT0 _atom_sites.fract_transf_matrix[1][1] 0.027667 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002071 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 401 1 ZN ZN . D 4 PEG A 1 402 401 PEG PEG . E 5 EDO A 1 403 402 EDO EDO . F 5 EDO A 1 404 403 EDO EDO . G 5 EDO A 1 405 401 EDO EDO . H 6 WWE B 1 101 1 WWE TA3 . I 7 HOH A 1 501 219 HOH HOH . I 7 HOH A 2 502 15 HOH HOH . I 7 HOH A 3 503 236 HOH HOH . I 7 HOH A 4 504 5 HOH HOH . I 7 HOH A 5 505 43 HOH HOH . I 7 HOH A 6 506 28 HOH HOH . I 7 HOH A 7 507 68 HOH HOH . I 7 HOH A 8 508 37 HOH HOH . I 7 HOH A 9 509 195 HOH HOH . I 7 HOH A 10 510 125 HOH HOH . I 7 HOH A 11 511 142 HOH HOH . I 7 HOH A 12 512 169 HOH HOH . I 7 HOH A 13 513 122 HOH HOH . I 7 HOH A 14 514 26 HOH HOH . I 7 HOH A 15 515 179 HOH HOH . I 7 HOH A 16 516 35 HOH HOH . I 7 HOH A 17 517 4 HOH HOH . I 7 HOH A 18 518 241 HOH HOH . I 7 HOH A 19 519 145 HOH HOH . I 7 HOH A 20 520 242 HOH HOH . I 7 HOH A 21 521 111 HOH HOH . I 7 HOH A 22 522 38 HOH HOH . I 7 HOH A 23 523 163 HOH HOH . I 7 HOH A 24 524 103 HOH HOH . I 7 HOH A 25 525 107 HOH HOH . I 7 HOH A 26 526 251 HOH HOH . I 7 HOH A 27 527 227 HOH HOH . I 7 HOH A 28 528 83 HOH HOH . I 7 HOH A 29 529 162 HOH HOH . I 7 HOH A 30 530 133 HOH HOH . I 7 HOH A 31 531 45 HOH HOH . I 7 HOH A 32 532 62 HOH HOH . I 7 HOH A 33 533 135 HOH HOH . I 7 HOH A 34 534 79 HOH HOH . I 7 HOH A 35 535 23 HOH HOH . I 7 HOH A 36 536 134 HOH HOH . I 7 HOH A 37 537 205 HOH HOH . I 7 HOH A 38 538 148 HOH HOH . I 7 HOH A 39 539 57 HOH HOH . I 7 HOH A 40 540 19 HOH HOH . I 7 HOH A 41 541 113 HOH HOH . I 7 HOH A 42 542 233 HOH HOH . I 7 HOH A 43 543 121 HOH HOH . I 7 HOH A 44 544 14 HOH HOH . I 7 HOH A 45 545 54 HOH HOH . I 7 HOH A 46 546 124 HOH HOH . I 7 HOH A 47 547 61 HOH HOH . I 7 HOH A 48 548 217 HOH HOH . I 7 HOH A 49 549 39 HOH HOH . I 7 HOH A 50 550 30 HOH HOH . I 7 HOH A 51 551 246 HOH HOH . I 7 HOH A 52 552 41 HOH HOH . I 7 HOH A 53 553 114 HOH HOH . I 7 HOH A 54 554 207 HOH HOH . I 7 HOH A 55 555 92 HOH HOH . I 7 HOH A 56 556 21 HOH HOH . I 7 HOH A 57 557 156 HOH HOH . I 7 HOH A 58 558 4 HOH HOH . I 7 HOH A 59 559 188 HOH HOH . I 7 HOH A 60 560 118 HOH HOH . I 7 HOH A 61 561 181 HOH HOH . I 7 HOH A 62 562 165 HOH HOH . I 7 HOH A 63 563 7 HOH HOH . I 7 HOH A 64 564 94 HOH HOH . I 7 HOH A 65 565 44 HOH HOH . I 7 HOH A 66 566 139 HOH HOH . I 7 HOH A 67 567 27 HOH HOH . I 7 HOH A 68 568 73 HOH HOH . I 7 HOH A 69 569 5 HOH HOH . I 7 HOH A 70 570 22 HOH HOH . I 7 HOH A 71 571 140 HOH HOH . I 7 HOH A 72 572 32 HOH HOH . I 7 HOH A 73 573 72 HOH HOH . I 7 HOH A 74 574 17 HOH HOH . I 7 HOH A 75 575 82 HOH HOH . I 7 HOH A 76 576 50 HOH HOH . I 7 HOH A 77 577 244 HOH HOH . I 7 HOH A 78 578 24 HOH HOH . I 7 HOH A 79 579 138 HOH HOH . I 7 HOH A 80 580 84 HOH HOH . I 7 HOH A 81 581 186 HOH HOH . I 7 HOH A 82 582 31 HOH HOH . I 7 HOH A 83 583 66 HOH HOH . I 7 HOH A 84 584 58 HOH HOH . I 7 HOH A 85 585 78 HOH HOH . I 7 HOH A 86 586 218 HOH HOH . I 7 HOH A 87 587 104 HOH HOH . I 7 HOH A 88 588 98 HOH HOH . I 7 HOH A 89 589 53 HOH HOH . I 7 HOH A 90 590 187 HOH HOH . I 7 HOH A 91 591 65 HOH HOH . I 7 HOH A 92 592 149 HOH HOH . I 7 HOH A 93 593 81 HOH HOH . I 7 HOH A 94 594 100 HOH HOH . I 7 HOH A 95 595 164 HOH HOH . I 7 HOH A 96 596 214 HOH HOH . I 7 HOH A 97 597 160 HOH HOH . I 7 HOH A 98 598 150 HOH HOH . I 7 HOH A 99 599 110 HOH HOH . I 7 HOH A 100 600 228 HOH HOH . I 7 HOH A 101 601 60 HOH HOH . I 7 HOH A 102 602 183 HOH HOH . I 7 HOH A 103 603 9 HOH HOH . I 7 HOH A 104 604 93 HOH HOH . I 7 HOH A 105 605 116 HOH HOH . I 7 HOH A 106 606 108 HOH HOH . I 7 HOH A 107 607 178 HOH HOH . I 7 HOH A 108 608 153 HOH HOH . I 7 HOH A 109 609 18 HOH HOH . I 7 HOH A 110 610 6 HOH HOH . I 7 HOH A 111 611 16 HOH HOH . I 7 HOH A 112 612 112 HOH HOH . I 7 HOH A 113 613 75 HOH HOH . I 7 HOH A 114 614 63 HOH HOH . I 7 HOH A 115 615 74 HOH HOH . I 7 HOH A 116 616 59 HOH HOH . I 7 HOH A 117 617 184 HOH HOH . I 7 HOH A 118 618 51 HOH HOH . I 7 HOH A 119 619 189 HOH HOH . I 7 HOH A 120 620 105 HOH HOH . I 7 HOH A 121 621 196 HOH HOH . I 7 HOH A 122 622 172 HOH HOH . I 7 HOH A 123 623 36 HOH HOH . I 7 HOH A 124 624 69 HOH HOH . I 7 HOH A 125 625 222 HOH HOH . I 7 HOH A 126 626 71 HOH HOH . I 7 HOH A 127 627 33 HOH HOH . I 7 HOH A 128 628 191 HOH HOH . I 7 HOH A 129 629 213 HOH HOH . I 7 HOH A 130 630 96 HOH HOH . I 7 HOH A 131 631 151 HOH HOH . I 7 HOH A 132 632 76 HOH HOH . I 7 HOH A 133 633 8 HOH HOH . I 7 HOH A 134 634 48 HOH HOH . I 7 HOH A 135 635 200 HOH HOH . I 7 HOH A 136 636 12 HOH HOH . I 7 HOH A 137 637 11 HOH HOH . I 7 HOH A 138 638 158 HOH HOH . I 7 HOH A 139 639 86 HOH HOH . I 7 HOH A 140 640 127 HOH HOH . I 7 HOH A 141 641 220 HOH HOH . I 7 HOH A 142 642 123 HOH HOH . I 7 HOH A 143 643 34 HOH HOH . I 7 HOH A 144 644 77 HOH HOH . I 7 HOH A 145 645 20 HOH HOH . I 7 HOH A 146 646 223 HOH HOH . I 7 HOH A 147 647 147 HOH HOH . I 7 HOH A 148 648 167 HOH HOH . I 7 HOH A 149 649 177 HOH HOH . I 7 HOH A 150 650 46 HOH HOH . I 7 HOH A 151 651 249 HOH HOH . I 7 HOH A 152 652 144 HOH HOH . I 7 HOH A 153 653 97 HOH HOH . I 7 HOH A 154 654 204 HOH HOH . I 7 HOH A 155 655 208 HOH HOH . I 7 HOH A 156 656 161 HOH HOH . I 7 HOH A 157 657 106 HOH HOH . I 7 HOH A 158 658 168 HOH HOH . I 7 HOH A 159 659 70 HOH HOH . I 7 HOH A 160 660 42 HOH HOH . I 7 HOH A 161 661 49 HOH HOH . I 7 HOH A 162 662 235 HOH HOH . I 7 HOH A 163 663 6 HOH HOH . I 7 HOH A 164 664 206 HOH HOH . I 7 HOH A 165 665 89 HOH HOH . I 7 HOH A 166 666 55 HOH HOH . I 7 HOH A 167 667 146 HOH HOH . I 7 HOH A 168 668 4 HOH HOH . I 7 HOH A 169 669 193 HOH HOH . I 7 HOH A 170 670 226 HOH HOH . I 7 HOH A 171 671 240 HOH HOH . I 7 HOH A 172 672 210 HOH HOH . I 7 HOH A 173 673 203 HOH HOH . I 7 HOH A 174 674 224 HOH HOH . I 7 HOH A 175 675 130 HOH HOH . I 7 HOH A 176 676 212 HOH HOH . I 7 HOH A 177 677 194 HOH HOH . I 7 HOH A 178 678 243 HOH HOH . I 7 HOH A 179 679 67 HOH HOH . I 7 HOH A 180 680 237 HOH HOH . I 7 HOH A 181 681 95 HOH HOH . I 7 HOH A 182 682 88 HOH HOH . I 7 HOH A 183 683 152 HOH HOH . I 7 HOH A 184 684 238 HOH HOH . I 7 HOH A 185 685 215 HOH HOH . I 7 HOH A 186 686 252 HOH HOH . I 7 HOH A 187 687 13 HOH HOH . I 7 HOH A 188 688 230 HOH HOH . I 7 HOH A 189 689 129 HOH HOH . I 7 HOH A 190 690 209 HOH HOH . I 7 HOH A 191 691 29 HOH HOH . I 7 HOH A 192 692 101 HOH HOH . I 7 HOH A 193 693 52 HOH HOH . I 7 HOH A 194 694 155 HOH HOH . I 7 HOH A 195 695 201 HOH HOH . I 7 HOH A 196 696 132 HOH HOH . I 7 HOH A 197 697 198 HOH HOH . I 7 HOH A 198 698 87 HOH HOH . I 7 HOH A 199 699 8 HOH HOH . I 7 HOH A 200 700 239 HOH HOH . I 7 HOH A 201 701 137 HOH HOH . I 7 HOH A 202 702 47 HOH HOH . I 7 HOH A 203 703 202 HOH HOH . I 7 HOH A 204 704 216 HOH HOH . I 7 HOH A 205 705 211 HOH HOH . I 7 HOH A 206 706 109 HOH HOH . I 7 HOH A 207 707 90 HOH HOH . I 7 HOH A 208 708 232 HOH HOH . I 7 HOH A 209 709 7 HOH HOH . I 7 HOH A 210 710 170 HOH HOH . I 7 HOH A 211 711 136 HOH HOH . I 7 HOH A 212 712 115 HOH HOH . I 7 HOH A 213 713 1 HOH HOH . J 7 HOH B 1 201 234 HOH HOH . J 7 HOH B 2 202 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 5 -0.631 15.989 41.293 1 35.75 ? C1 EDO 404 A 1 HETATM 2 O O1 EDO . . . F 5 -1.705 15.049 41.383 1 48.16 ? O1 EDO 404 A 1 HETATM 3 C C2 EDO . . . F 5 0.544 15.447 42.082 1 35.19 ? C2 EDO 404 A 1 HETATM 4 O O2 EDO . . . F 5 0.983 14.201 41.528 1 34.21 ? O2 EDO 404 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #