data_8QT6 # _model_server_result.job_id wb3a0JQ-mTLia7mfGyJ1RA _model_server_result.datetime_utc '2024-11-25 05:33:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qt6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8QT6 # _exptl.entry_id 8QT6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QT6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QT6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 68 A HIS 69 1_555 D FE HEM . A HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc2 A NE2 HIS 82 A HIS 83 1_555 C FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc3 A NE2 HIS 128 A HIS 129 1_555 D FE HEM . A HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc4 A NE2 HIS 141 A HIS 142 1_555 C FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 8QT6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 501 506 FAD FAD . C 3 HEM A 1 502 507 HEM HEM . D 3 HEM A 1 503 508 HEM HEM . E 4 HOH A 1 601 4 HOH HOH . E 4 HOH A 2 602 42 HOH HOH . E 4 HOH A 3 603 9 HOH HOH . E 4 HOH A 4 604 10 HOH HOH . E 4 HOH A 5 605 31 HOH HOH . E 4 HOH A 6 606 49 HOH HOH . E 4 HOH A 7 607 48 HOH HOH . E 4 HOH A 8 608 39 HOH HOH . E 4 HOH A 9 609 52 HOH HOH . E 4 HOH A 10 610 47 HOH HOH . E 4 HOH A 11 611 51 HOH HOH . E 4 HOH A 12 612 38 HOH HOH . E 4 HOH A 13 613 15 HOH HOH . E 4 HOH A 14 614 59 HOH HOH . E 4 HOH A 15 615 36 HOH HOH . E 4 HOH A 16 616 22 HOH HOH . E 4 HOH A 17 617 3 HOH HOH . E 4 HOH A 18 618 46 HOH HOH . E 4 HOH A 19 619 44 HOH HOH . E 4 HOH A 20 620 37 HOH HOH . E 4 HOH A 21 621 33 HOH HOH . E 4 HOH A 22 622 11 HOH HOH . E 4 HOH A 23 623 6 HOH HOH . E 4 HOH A 24 624 28 HOH HOH . E 4 HOH A 25 625 60 HOH HOH . E 4 HOH A 26 626 40 HOH HOH . E 4 HOH A 27 627 63 HOH HOH . E 4 HOH A 28 628 5 HOH HOH . E 4 HOH A 29 629 57 HOH HOH . E 4 HOH A 30 630 23 HOH HOH . E 4 HOH A 31 631 19 HOH HOH . E 4 HOH A 32 632 7 HOH HOH . E 4 HOH A 33 633 8 HOH HOH . E 4 HOH A 34 634 16 HOH HOH . E 4 HOH A 35 635 17 HOH HOH . E 4 HOH A 36 636 35 HOH HOH . E 4 HOH A 37 637 58 HOH HOH . E 4 HOH A 38 638 43 HOH HOH . E 4 HOH A 39 639 21 HOH HOH . E 4 HOH A 40 640 45 HOH HOH . E 4 HOH A 41 641 61 HOH HOH . E 4 HOH A 42 642 20 HOH HOH . E 4 HOH A 43 643 12 HOH HOH . E 4 HOH A 44 644 34 HOH HOH . E 4 HOH A 45 645 56 HOH HOH . E 4 HOH A 46 646 62 HOH HOH . E 4 HOH A 47 647 24 HOH HOH . E 4 HOH A 48 648 18 HOH HOH . E 4 HOH A 49 649 41 HOH HOH . E 4 HOH A 50 650 14 HOH HOH . E 4 HOH A 51 651 1 HOH HOH . E 4 HOH A 52 652 30 HOH HOH . E 4 HOH A 53 653 26 HOH HOH . E 4 HOH A 54 654 27 HOH HOH . E 4 HOH A 55 655 32 HOH HOH . E 4 HOH A 56 656 29 HOH HOH . E 4 HOH A 57 657 54 HOH HOH . E 4 HOH A 58 658 13 HOH HOH . E 4 HOH A 59 659 55 HOH HOH . E 4 HOH A 60 660 2 HOH HOH . E 4 HOH A 61 661 50 HOH HOH . E 4 HOH A 62 662 53 HOH HOH . E 4 HOH A 63 663 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 133.213 143.222 143.619 1 32.73 ? PA FAD 501 A 1 HETATM 2 O O1A FAD . . . B 2 134.183 144.189 144.18 1 29.56 ? O1A FAD 501 A 1 HETATM 3 O O2A FAD . . . B 2 132.371 143.722 142.446 1 25.25 ? O2A FAD 501 A 1 HETATM 4 O O5B FAD . . . B 2 133.934 141.909 143.171 1 26.18 ? O5B FAD 501 A 1 HETATM 5 C C5B FAD . . . B 2 134.716 141.129 144.099 1 20.98 ? C5B FAD 501 A 1 HETATM 6 C C4B FAD . . . B 2 134.674 139.675 143.696 1 26.88 ? C4B FAD 501 A 1 HETATM 7 O O4B FAD . . . B 2 133.3 139.246 143.551 1 32.23 ? O4B FAD 501 A 1 HETATM 8 C C3B FAD . . . B 2 135.366 139.334 142.378 1 27.23 ? C3B FAD 501 A 1 HETATM 9 O O3B FAD . . . B 2 136.018 138.071 142.454 1 38.47 ? O3B FAD 501 A 1 HETATM 10 C C2B FAD . . . B 2 134.209 139.319 141.377 1 23.46 ? C2B FAD 501 A 1 HETATM 11 O O2B FAD . . . B 2 134.466 138.447 140.283 1 38.16 ? O2B FAD 501 A 1 HETATM 12 C C1B FAD . . . B 2 133.07 138.775 142.238 1 22.35 ? C1B FAD 501 A 1 HETATM 13 N N9A FAD . . . B 2 131.744 139.222 141.817 1 25.44 ? N9A FAD 501 A 1 HETATM 14 C C8A FAD . . . B 2 131.306 140.514 141.711 1 15.47 ? C8A FAD 501 A 1 HETATM 15 N N7A FAD . . . B 2 130.063 140.627 141.31 1 21.98 ? N7A FAD 501 A 1 HETATM 16 C C5A FAD . . . B 2 129.655 139.314 141.135 1 10.08 ? C5A FAD 501 A 1 HETATM 17 C C6A FAD . . . B 2 128.436 138.746 140.716 1 13.93 ? C6A FAD 501 A 1 HETATM 18 N N6A FAD . . . B 2 127.357 139.461 140.385 1 6.92 ? N6A FAD 501 A 1 HETATM 19 N N1A FAD . . . B 2 128.363 137.399 140.649 1 22.69 ? N1A FAD 501 A 1 HETATM 20 C C2A FAD . . . B 2 129.437 136.679 140.979 1 18.39 ? C2A FAD 501 A 1 HETATM 21 N N3A FAD . . . B 2 130.635 137.101 141.387 1 19.18 ? N3A FAD 501 A 1 HETATM 22 C C4A FAD . . . B 2 130.681 138.437 141.441 1 17.95 ? C4A FAD 501 A 1 HETATM 23 N N1 FAD . . . B 2 129.522 136.405 149.97 1 25.16 ? N1 FAD 501 A 1 HETATM 24 C C2 FAD . . . B 2 129.078 136.635 151.239 1 21.54 ? C2 FAD 501 A 1 HETATM 25 O O2 FAD . . . B 2 129.316 137.694 151.826 1 24.85 ? O2 FAD 501 A 1 HETATM 26 N N3 FAD . . . B 2 128.342 135.664 151.892 1 22.56 ? N3 FAD 501 A 1 HETATM 27 C C4 FAD . . . B 2 127.99 134.432 151.384 1 24.78 ? C4 FAD 501 A 1 HETATM 28 O O4 FAD . . . B 2 127.331 133.649 152.064 1 30.26 ? O4 FAD 501 A 1 HETATM 29 C C4X FAD . . . B 2 128.465 134.199 150.035 1 17.51 ? C4X FAD 501 A 1 HETATM 30 N N5 FAD . . . B 2 128.18 133.058 149.474 1 17.59 ? N5 FAD 501 A 1 HETATM 31 C C5X FAD . . . B 2 128.634 132.836 148.185 1 16.53 ? C5X FAD 501 A 1 HETATM 32 C C6 FAD . . . B 2 128.338 131.622 147.568 1 17.83 ? C6 FAD 501 A 1 HETATM 33 C C7 FAD . . . B 2 128.773 131.353 146.274 1 22.27 ? C7 FAD 501 A 1 HETATM 34 C C7M FAD . . . B 2 128.436 130.031 145.638 1 20.33 ? C7M FAD 501 A 1 HETATM 35 C C8 FAD . . . B 2 129.522 132.317 145.579 1 22.47 ? C8 FAD 501 A 1 HETATM 36 C C8M FAD . . . B 2 130.008 132.057 144.178 1 19.54 ? C8M FAD 501 A 1 HETATM 37 C C9 FAD . . . B 2 129.82 133.529 146.193 1 19.12 ? C9 FAD 501 A 1 HETATM 38 C C9A FAD . . . B 2 129.383 133.793 147.485 1 21.86 ? C9A FAD 501 A 1 HETATM 39 N N10 FAD . . . B 2 129.666 135.013 148.131 1 19.98 ? N10 FAD 501 A 1 HETATM 40 C C10 FAD . . . B 2 129.226 135.247 149.41 1 18.76 ? C10 FAD 501 A 1 HETATM 41 C C1' FAD . . . B 2 130.45 136.054 147.456 1 17.7 ? C1' FAD 501 A 1 HETATM 42 C C2' FAD . . . B 2 129.589 137.15 146.84 1 25.8 ? C2' FAD 501 A 1 HETATM 43 O O2' FAD . . . B 2 128.859 136.643 145.722 1 30.91 ? O2' FAD 501 A 1 HETATM 44 C C3' FAD . . . B 2 130.493 138.293 146.378 1 25.49 ? C3' FAD 501 A 1 HETATM 45 O O3' FAD . . . B 2 131.205 138.8 147.501 1 30.37 ? O3' FAD 501 A 1 HETATM 46 C C4' FAD . . . B 2 129.754 139.446 145.7 1 21.55 ? C4' FAD 501 A 1 HETATM 47 O O4' FAD . . . B 2 128.933 138.929 144.652 1 25.72 ? O4' FAD 501 A 1 HETATM 48 C C5' FAD . . . B 2 130.7 140.496 145.16 1 14.84 ? C5' FAD 501 A 1 HETATM 49 O O5' FAD . . . B 2 129.992 141.746 145.031 1 19.69 ? O5' FAD 501 A 1 HETATM 50 P P FAD . . . B 2 130.751 143.121 145.089 1 22.43 ? P FAD 501 A 1 HETATM 51 O O1P FAD . . . B 2 130.245 144.054 143.986 1 36.09 ? O1P FAD 501 A 1 HETATM 52 O O2P FAD . . . B 2 130.67 143.66 146.452 1 19.8 ? O2P FAD 501 A 1 HETATM 53 O O3P FAD . . . B 2 132.245 142.696 144.76 1 33.5 ? O3P FAD 501 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #