data_8QT6 # _model_server_result.job_id 0T_YbxQVbIdfh8CulbLRXg _model_server_result.datetime_utc '2025-02-18 02:02:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qt6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 8QT6 # _exptl.entry_id 8QT6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QT6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QT6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 68 A HIS 69 1_555 D FE HEM . A HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc2 A NE2 HIS 82 A HIS 83 1_555 C FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc3 A NE2 HIS 128 A HIS 129 1_555 D FE HEM . A HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc4 A NE2 HIS 141 A HIS 142 1_555 C FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 220 n n CHA C4D HEM doub 221 n n CHA HHA HEM sing 222 n n CHB C4A HEM sing 223 n n CHB C1B HEM doub 224 n n CHB HHB HEM sing 225 n n CHC C4B HEM sing 226 n n CHC C1C HEM doub 227 n n CHC HHC HEM sing 228 n n CHD C4C HEM doub 229 n n CHD C1D HEM sing 230 n n CHD HHD HEM sing 231 n n C1A C2A HEM doub 232 n y C1A NA HEM sing 233 n y C2A C3A HEM sing 234 n y C2A CAA HEM sing 235 n n C3A C4A HEM doub 236 n y C3A CMA HEM sing 237 n n C4A NA HEM sing 238 n y CMA HMA HEM sing 239 n n CMA HMAA HEM sing 240 n n CMA HMAB HEM sing 241 n n CAA CBA HEM sing 242 n n CAA HAA HEM sing 243 n n CAA HAAA HEM sing 244 n n CBA CGA HEM sing 245 n n CBA HBA HEM sing 246 n n CBA HBAA HEM sing 247 n n CGA O1A HEM doub 248 n n CGA O2A HEM sing 249 n n C1B C2B HEM sing 250 n n C1B NB HEM sing 251 n n C2B C3B HEM doub 252 n n C2B CMB HEM sing 253 n n C3B C4B HEM sing 254 n n C3B CAB HEM sing 255 n n C4B NB HEM doub 256 n n CMB HMB HEM sing 257 n n CMB HMBA HEM sing 258 n n CMB HMBB HEM sing 259 n n CAB CBB HEM doub 260 n n CAB HAB HEM sing 261 n n CBB HBB HEM sing 262 n n CBB HBBA HEM sing 263 n n C1C C2C HEM sing 264 n y C1C NC HEM sing 265 n y C2C C3C HEM doub 266 n y C2C CMC HEM sing 267 n n C3C C4C HEM sing 268 n y C3C CAC HEM sing 269 n n C4C NC HEM sing 270 n y CMC HMC HEM sing 271 n n CMC HMCA HEM sing 272 n n CMC HMCB HEM sing 273 n n CAC CBC HEM doub 274 n n CAC HAC HEM sing 275 n n CBC HBC HEM sing 276 n n CBC HBCA HEM sing 277 n n C1D C2D HEM sing 278 n n C1D ND HEM doub 279 n n C2D C3D HEM doub 280 n n C2D CMD HEM sing 281 n n C3D C4D HEM sing 282 n n C3D CAD HEM sing 283 n n C4D ND HEM sing 284 n n CMD HMD HEM sing 285 n n CMD HMDA HEM sing 286 n n CMD HMDB HEM sing 287 n n CAD CBD HEM sing 288 n n CAD HAD HEM sing 289 n n CAD HADA HEM sing 290 n n CBD CGD HEM sing 291 n n CBD HBD HEM sing 292 n n CBD HBDA HEM sing 293 n n CGD O1D HEM doub 294 n n CGD O2D HEM sing 295 n n O2A H2A HEM sing 296 n n O2D H2D HEM sing 297 n n FE NA HEM sing 298 n n FE NB HEM sing 299 n n FE NC HEM sing 300 n n FE ND HEM sing 301 n n # _atom_sites.entry_id 8QT6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 501 506 FAD FAD . C 3 HEM A 1 502 507 HEM HEM . D 3 HEM A 1 503 508 HEM HEM . E 4 HOH A 1 601 4 HOH HOH . E 4 HOH A 2 602 42 HOH HOH . E 4 HOH A 3 603 9 HOH HOH . E 4 HOH A 4 604 10 HOH HOH . E 4 HOH A 5 605 31 HOH HOH . E 4 HOH A 6 606 49 HOH HOH . E 4 HOH A 7 607 48 HOH HOH . E 4 HOH A 8 608 39 HOH HOH . E 4 HOH A 9 609 52 HOH HOH . E 4 HOH A 10 610 47 HOH HOH . E 4 HOH A 11 611 51 HOH HOH . E 4 HOH A 12 612 38 HOH HOH . E 4 HOH A 13 613 15 HOH HOH . E 4 HOH A 14 614 59 HOH HOH . E 4 HOH A 15 615 36 HOH HOH . E 4 HOH A 16 616 22 HOH HOH . E 4 HOH A 17 617 3 HOH HOH . E 4 HOH A 18 618 46 HOH HOH . E 4 HOH A 19 619 44 HOH HOH . E 4 HOH A 20 620 37 HOH HOH . E 4 HOH A 21 621 33 HOH HOH . E 4 HOH A 22 622 11 HOH HOH . E 4 HOH A 23 623 6 HOH HOH . E 4 HOH A 24 624 28 HOH HOH . E 4 HOH A 25 625 60 HOH HOH . E 4 HOH A 26 626 40 HOH HOH . E 4 HOH A 27 627 63 HOH HOH . E 4 HOH A 28 628 5 HOH HOH . E 4 HOH A 29 629 57 HOH HOH . E 4 HOH A 30 630 23 HOH HOH . E 4 HOH A 31 631 19 HOH HOH . E 4 HOH A 32 632 7 HOH HOH . E 4 HOH A 33 633 8 HOH HOH . E 4 HOH A 34 634 16 HOH HOH . E 4 HOH A 35 635 17 HOH HOH . E 4 HOH A 36 636 35 HOH HOH . E 4 HOH A 37 637 58 HOH HOH . E 4 HOH A 38 638 43 HOH HOH . E 4 HOH A 39 639 21 HOH HOH . E 4 HOH A 40 640 45 HOH HOH . E 4 HOH A 41 641 61 HOH HOH . E 4 HOH A 42 642 20 HOH HOH . E 4 HOH A 43 643 12 HOH HOH . E 4 HOH A 44 644 34 HOH HOH . E 4 HOH A 45 645 56 HOH HOH . E 4 HOH A 46 646 62 HOH HOH . E 4 HOH A 47 647 24 HOH HOH . E 4 HOH A 48 648 18 HOH HOH . E 4 HOH A 49 649 41 HOH HOH . E 4 HOH A 50 650 14 HOH HOH . E 4 HOH A 51 651 1 HOH HOH . E 4 HOH A 52 652 30 HOH HOH . E 4 HOH A 53 653 26 HOH HOH . E 4 HOH A 54 654 27 HOH HOH . E 4 HOH A 55 655 32 HOH HOH . E 4 HOH A 56 656 29 HOH HOH . E 4 HOH A 57 657 54 HOH HOH . E 4 HOH A 58 658 13 HOH HOH . E 4 HOH A 59 659 55 HOH HOH . E 4 HOH A 60 660 2 HOH HOH . E 4 HOH A 61 661 50 HOH HOH . E 4 HOH A 62 662 53 HOH HOH . E 4 HOH A 63 663 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 135.848 131.119 105.489 1 20.47 ? CHA HEM 502 A 1 HETATM 2 C CHB HEM . . . C 3 132.728 127.395 105.578 1 20.18 ? CHB HEM 502 A 1 HETATM 3 C CHC HEM . . . C 3 132.049 128.132 110.322 1 15.87 ? CHC HEM 502 A 1 HETATM 4 C CHD HEM . . . C 3 134.84 132.087 110.138 1 14.09 ? CHD HEM 502 A 1 HETATM 5 C C1A HEM . . . C 3 135.041 130.075 105.088 1 20.07 ? C1A HEM 502 A 1 HETATM 6 C C2A HEM . . . C 3 134.874 129.593 103.733 1 22.92 ? C2A HEM 502 A 1 HETATM 7 C C3A HEM . . . C 3 134.016 128.572 103.754 1 17.41 ? C3A HEM 502 A 1 HETATM 8 C C4A HEM . . . C 3 133.606 128.357 105.126 1 17.27 ? C4A HEM 502 A 1 HETATM 9 C CMA HEM . . . C 3 133.55 127.763 102.526 1 23.33 ? CMA HEM 502 A 1 HETATM 10 C CAA HEM . . . C 3 135.558 130.174 102.477 1 23.17 ? CAA HEM 502 A 1 HETATM 11 C CBA HEM . . . C 3 134.921 131.525 102.167 1 21.16 ? CBA HEM 502 A 1 HETATM 12 C CGA HEM . . . C 3 135.712 132.243 101.107 1 37.4 ? CGA HEM 502 A 1 HETATM 13 O O1A HEM . . . C 3 135.371 133.413 100.796 1 42.32 ? O1A HEM 502 A 1 HETATM 14 O O2A HEM . . . C 3 136.684 131.648 100.575 1 42.01 ? O2A HEM 502 A 1 HETATM 15 C C1B HEM . . . C 3 132.305 127.238 106.88 1 17.83 ? C1B HEM 502 A 1 HETATM 16 C C2B HEM . . . C 3 131.478 126.16 107.383 1 20.39 ? C2B HEM 502 A 1 HETATM 17 C C3B HEM . . . C 3 131.291 126.361 108.702 1 15.75 ? C3B HEM 502 A 1 HETATM 18 C C4B HEM . . . C 3 131.994 127.574 109.063 1 13.23 ? C4B HEM 502 A 1 HETATM 19 C CMB HEM . . . C 3 130.95 125.015 106.488 1 16.35 ? CMB HEM 502 A 1 HETATM 20 C CAB HEM . . . C 3 130.494 125.528 109.74 1 23.18 ? CAB HEM 502 A 1 HETATM 21 C CBB HEM . . . C 3 129.822 124.406 109.471 1 24.25 ? CBB HEM 502 A 1 HETATM 22 C C1C HEM . . . C 3 132.648 129.326 110.66 1 19.86 ? C1C HEM 502 A 1 HETATM 23 C C2C HEM . . . C 3 132.423 130.086 111.873 1 17.02 ? C2C HEM 502 A 1 HETATM 24 C C3C HEM . . . C 3 133.198 131.188 111.821 1 24.26 ? C3C HEM 502 A 1 HETATM 25 C C4C HEM . . . C 3 133.934 131.145 110.574 1 19.08 ? C4C HEM 502 A 1 HETATM 26 C CMC HEM . . . C 3 131.443 129.639 112.983 1 16.92 ? CMC HEM 502 A 1 HETATM 27 C CAC HEM . . . C 3 133.366 132.347 112.84 1 20 ? CAC HEM 502 A 1 HETATM 28 C CBC HEM . . . C 3 132.778 132.403 114.038 1 22.73 ? CBC HEM 502 A 1 HETATM 29 C C1D HEM . . . C 3 135.4 132.149 108.88 1 19.75 ? C1D HEM 502 A 1 HETATM 30 C C2D HEM . . . C 3 136.408 133.086 108.438 1 19.59 ? C2D HEM 502 A 1 HETATM 31 C C3D HEM . . . C 3 136.688 132.831 107.158 1 21.68 ? C3D HEM 502 A 1 HETATM 32 C C4D HEM . . . C 3 135.871 131.709 106.736 1 22.89 ? C4D HEM 502 A 1 HETATM 33 C CMD HEM . . . C 3 137.041 134.196 109.3 1 13.08 ? CMD HEM 502 A 1 HETATM 34 C CAD HEM . . . C 3 137.719 133.604 106.303 1 18.73 ? CAD HEM 502 A 1 HETATM 35 C CBD HEM . . . C 3 137.039 134.238 105.094 1 19.84 ? CBD HEM 502 A 1 HETATM 36 C CGD HEM . . . C 3 138.033 135.028 104.287 1 24.89 ? CGD HEM 502 A 1 HETATM 37 O O1D HEM . . . C 3 138.092 134.825 103.049 1 37.61 ? O1D HEM 502 A 1 HETATM 38 O O2D HEM . . . C 3 138.772 135.851 104.879 1 26.62 ? O2D HEM 502 A 1 HETATM 39 N NA HEM . . . C 3 134.254 129.293 105.91 1 22.59 ? NA HEM 502 A 1 HETATM 40 N NB HEM . . . C 3 132.599 128.08 107.932 1 21.78 ? NB HEM 502 A 1 HETATM 41 N NC HEM . . . C 3 133.574 130.001 109.894 1 25.81 ? NC HEM 502 A 1 HETATM 42 N ND HEM . . . C 3 135.098 131.324 107.815 1 21.85 ? ND HEM 502 A 1 HETATM 43 FE FE HEM . . . C 3 133.862 129.687 107.881 1 32.59 ? FE HEM 502 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #