data_8QT7
#
_model_server_result.job_id            2aoCXPXyNuB9lj9akDZ5tg 
_model_server_result.datetime_utc      '2024-10-10 10:26:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8qt7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    8QT7 
#
_exptl.entry_id    8QT7 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8QT7 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8QT7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 68 A HIS 69 1_555 E FE HEM . A HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc2 A NE2 HIS 82 A HIS 83 1_555 D FE HEM . A HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc3 A NE2 HIS 128 A HIS 129 1_555 E FE HEM . A HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc4 A NE2 HIS 141 A HIS 142 1_555 D FE HEM . A HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 220 n n 
CHA C4D HEM doub 221 n n 
CHA HHA HEM sing 222 n n 
CHB C4A HEM sing 223 n n 
CHB C1B HEM doub 224 n n 
CHB HHB HEM sing 225 n n 
CHC C4B HEM sing 226 n n 
CHC C1C HEM doub 227 n n 
CHC HHC HEM sing 228 n n 
CHD C4C HEM doub 229 n n 
CHD C1D HEM sing 230 n n 
CHD HHD HEM sing 231 n n 
C1A C2A HEM doub 232 n y 
C1A NA HEM sing 233 n y 
C2A C3A HEM sing 234 n y 
C2A CAA HEM sing 235 n n 
C3A C4A HEM doub 236 n y 
C3A CMA HEM sing 237 n n 
C4A NA HEM sing 238 n y 
CMA HMA HEM sing 239 n n 
CMA HMAA HEM sing 240 n n 
CMA HMAB HEM sing 241 n n 
CAA CBA HEM sing 242 n n 
CAA HAA HEM sing 243 n n 
CAA HAAA HEM sing 244 n n 
CBA CGA HEM sing 245 n n 
CBA HBA HEM sing 246 n n 
CBA HBAA HEM sing 247 n n 
CGA O1A HEM doub 248 n n 
CGA O2A HEM sing 249 n n 
C1B C2B HEM sing 250 n n 
C1B NB HEM sing 251 n n 
C2B C3B HEM doub 252 n n 
C2B CMB HEM sing 253 n n 
C3B C4B HEM sing 254 n n 
C3B CAB HEM sing 255 n n 
C4B NB HEM doub 256 n n 
CMB HMB HEM sing 257 n n 
CMB HMBA HEM sing 258 n n 
CMB HMBB HEM sing 259 n n 
CAB CBB HEM doub 260 n n 
CAB HAB HEM sing 261 n n 
CBB HBB HEM sing 262 n n 
CBB HBBA HEM sing 263 n n 
C1C C2C HEM sing 264 n y 
C1C NC HEM sing 265 n y 
C2C C3C HEM doub 266 n y 
C2C CMC HEM sing 267 n n 
C3C C4C HEM sing 268 n y 
C3C CAC HEM sing 269 n n 
C4C NC HEM sing 270 n y 
CMC HMC HEM sing 271 n n 
CMC HMCA HEM sing 272 n n 
CMC HMCB HEM sing 273 n n 
CAC CBC HEM doub 274 n n 
CAC HAC HEM sing 275 n n 
CBC HBC HEM sing 276 n n 
CBC HBCA HEM sing 277 n n 
C1D C2D HEM sing 278 n n 
C1D ND HEM doub 279 n n 
C2D C3D HEM doub 280 n n 
C2D CMD HEM sing 281 n n 
C3D C4D HEM sing 282 n n 
C3D CAD HEM sing 283 n n 
C4D ND HEM sing 284 n n 
CMD HMD HEM sing 285 n n 
CMD HMDA HEM sing 286 n n 
CMD HMDB HEM sing 287 n n 
CAD CBD HEM sing 288 n n 
CAD HAD HEM sing 289 n n 
CAD HADA HEM sing 290 n n 
CBD CGD HEM sing 291 n n 
CBD HBD HEM sing 292 n n 
CBD HBDA HEM sing 293 n n 
CGD O1D HEM doub 294 n n 
CGD O2D HEM sing 295 n n 
O2A H2A HEM sing 296 n n 
O2D H2D HEM sing 297 n n 
FE NA HEM sing 298 n n 
FE NB HEM sing 299 n n 
FE NC HEM sing 300 n n 
FE ND HEM sing 301 n n 
#
_atom_sites.entry_id                     8QT7 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP A 1 501 504 NDP NDP . 
C 3 FAD A 1 502 506 FAD FAD . 
D 4 HEM A 1 503 507 HEM HEM . 
E 4 HEM A 1 504 508 HEM HEM . 
F 5 HOH A 1 601 4 HOH HOH . 
F 5 HOH A 2 602 49 HOH HOH . 
F 5 HOH A 3 603 48 HOH HOH . 
F 5 HOH A 4 604 15 HOH HOH . 
F 5 HOH A 5 605 47 HOH HOH . 
F 5 HOH A 6 606 60 HOH HOH . 
F 5 HOH A 7 607 42 HOH HOH . 
F 5 HOH A 8 608 9 HOH HOH . 
F 5 HOH A 9 609 22 HOH HOH . 
F 5 HOH A 10 610 14 HOH HOH . 
F 5 HOH A 11 611 38 HOH HOH . 
F 5 HOH A 12 612 6 HOH HOH . 
F 5 HOH A 13 613 1 HOH HOH . 
F 5 HOH A 14 614 10 HOH HOH . 
F 5 HOH A 15 615 12 HOH HOH . 
F 5 HOH A 16 616 3 HOH HOH . 
F 5 HOH A 17 617 2 HOH HOH . 
F 5 HOH A 18 618 57 HOH HOH . 
F 5 HOH A 19 619 51 HOH HOH . 
F 5 HOH A 20 620 39 HOH HOH . 
F 5 HOH A 21 621 44 HOH HOH . 
F 5 HOH A 22 622 52 HOH HOH . 
F 5 HOH A 23 623 13 HOH HOH . 
F 5 HOH A 24 624 61 HOH HOH . 
F 5 HOH A 25 625 37 HOH HOH . 
F 5 HOH A 26 626 62 HOH HOH . 
F 5 HOH A 27 627 36 HOH HOH . 
F 5 HOH A 28 628 66 HOH HOH . 
F 5 HOH A 29 629 53 HOH HOH . 
F 5 HOH A 30 630 59 HOH HOH . 
F 5 HOH A 31 631 33 HOH HOH . 
F 5 HOH A 32 632 19 HOH HOH . 
F 5 HOH A 33 633 28 HOH HOH . 
F 5 HOH A 34 634 64 HOH HOH . 
F 5 HOH A 35 635 16 HOH HOH . 
F 5 HOH A 36 636 63 HOH HOH . 
F 5 HOH A 37 637 7 HOH HOH . 
F 5 HOH A 38 638 5 HOH HOH . 
F 5 HOH A 39 639 8 HOH HOH . 
F 5 HOH A 40 640 23 HOH HOH . 
F 5 HOH A 41 641 35 HOH HOH . 
F 5 HOH A 42 642 11 HOH HOH . 
F 5 HOH A 43 643 41 HOH HOH . 
F 5 HOH A 44 644 43 HOH HOH . 
F 5 HOH A 45 645 46 HOH HOH . 
F 5 HOH A 46 646 20 HOH HOH . 
F 5 HOH A 47 647 21 HOH HOH . 
F 5 HOH A 48 648 40 HOH HOH . 
F 5 HOH A 49 649 18 HOH HOH . 
F 5 HOH A 50 650 27 HOH HOH . 
F 5 HOH A 51 651 26 HOH HOH . 
F 5 HOH A 52 652 31 HOH HOH . 
F 5 HOH A 53 653 34 HOH HOH . 
F 5 HOH A 54 654 50 HOH HOH . 
F 5 HOH A 55 655 30 HOH HOH . 
F 5 HOH A 56 656 24 HOH HOH . 
F 5 HOH A 57 657 17 HOH HOH . 
F 5 HOH A 58 658 45 HOH HOH . 
F 5 HOH A 59 659 58 HOH HOH . 
F 5 HOH A 60 660 29 HOH HOH . 
F 5 HOH A 61 661 54 HOH HOH . 
F 5 HOH A 62 662 67 HOH HOH . 
F 5 HOH A 63 663 55 HOH HOH . 
F 5 HOH A 64 664 65 HOH HOH . 
F 5 HOH A 65 665 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . D 4 134.873 128.118 149.444 1 23.81 ? CHA HEM 503 A 1 
HETATM 2 C CHB HEM . . . D 4 131.506 131.539 149.37 1 28.91 ? CHB HEM 503 A 1 
HETATM 3 C CHC HEM . . . D 4 130.788 130.562 144.675 1 23.7 ? CHC HEM 503 A 1 
HETATM 4 C CHD HEM . . . D 4 133.815 126.846 144.958 1 17.66 ? CHD HEM 503 A 1 
HETATM 5 C C1A HEM . . . D 4 134.016 129.112 149.834 1 20.95 ? C1A HEM 503 A 1 
HETATM 6 C C2A HEM . . . D 4 133.963 129.69 151.095 1 26.64 ? C2A HEM 503 A 1 
HETATM 7 C C3A HEM . . . D 4 133.037 130.652 151.066 1 21.02 ? C3A HEM 503 A 1 
HETATM 8 C C4A HEM . . . D 4 132.485 130.689 149.802 1 22.45 ? C4A HEM 503 A 1 
HETATM 9 C CMA HEM . . . D 4 132.692 131.503 152.24 1 25.3 ? CMA HEM 503 A 1 
HETATM 10 C CAA HEM . . . D 4 134.793 129.369 152.309 1 30.86 ? CAA HEM 503 A 1 
HETATM 11 C CBA HEM . . . D 4 134.786 127.891 152.673 1 34.02 ? CBA HEM 503 A 1 
HETATM 12 C CGA HEM . . . D 4 133.979 127.578 153.886 1 43.81 ? CGA HEM 503 A 1 
HETATM 13 O O1A HEM . . . D 4 132.793 127.924 153.978 1 49.96 ? O1A HEM 503 A 1 
HETATM 14 O O2A HEM . . . D 4 134.511 126.932 154.801 1 47.59 ? O2A HEM 503 A 1 
HETATM 15 C C1B HEM . . . D 4 131.064 131.598 148.048 1 24.9 ? C1B HEM 503 A 1 
HETATM 16 C C2B HEM . . . D 4 130.129 132.535 147.586 1 28.48 ? C2B HEM 503 A 1 
HETATM 17 C C3B HEM . . . D 4 129.943 132.262 146.273 1 30.4 ? C3B HEM 503 A 1 
HETATM 18 C C4B HEM . . . D 4 130.767 131.12 145.941 1 24.75 ? C4B HEM 503 A 1 
HETATM 19 C CMB HEM . . . D 4 129.48 133.628 148.396 1 31.38 ? CMB HEM 503 A 1 
HETATM 20 C CAB HEM . . . D 4 129.076 132.898 145.289 1 32.39 ? CAB HEM 503 A 1 
HETATM 21 C CBB HEM . . . D 4 129.049 134.186 145.129 1 36.04 ? CBB HEM 503 A 1 
HETATM 22 C C1C HEM . . . D 4 131.433 129.391 144.355 1 20.96 ? C1C HEM 503 A 1 
HETATM 23 C C2C HEM . . . D 4 131.235 128.598 143.234 1 29.19 ? C2C HEM 503 A 1 
HETATM 24 C C3C HEM . . . D 4 132.129 127.528 143.333 1 29.08 ? C3C HEM 503 A 1 
HETATM 25 C C4C HEM . . . D 4 132.842 127.697 144.529 1 27.95 ? C4C HEM 503 A 1 
HETATM 26 C CMC HEM . . . D 4 130.237 128.933 142.15 1 19.75 ? CMC HEM 503 A 1 
HETATM 27 C CAC HEM . . . D 4 132.418 126.375 142.455 1 22.27 ? CAC HEM 503 A 1 
HETATM 28 C CBC HEM . . . D 4 131.783 126.07 141.345 1 36.84 ? CBC HEM 503 A 1 
HETATM 29 C C1D HEM . . . D 4 134.369 126.944 146.214 1 20.68 ? C1D HEM 503 A 1 
HETATM 30 C C2D HEM . . . D 4 135.425 126.053 146.641 1 30.19 ? C2D HEM 503 A 1 
HETATM 31 C C3D HEM . . . D 4 135.728 126.402 147.883 1 31.4 ? C3D HEM 503 A 1 
HETATM 32 C C4D HEM . . . D 4 134.855 127.514 148.208 1 24.38 ? C4D HEM 503 A 1 
HETATM 33 C CMD HEM . . . D 4 136.046 124.965 145.834 1 17.57 ? CMD HEM 503 A 1 
HETATM 34 C CAD HEM . . . D 4 136.76 125.775 148.779 1 24.3 ? CAD HEM 503 A 1 
HETATM 35 C CBD HEM . . . D 4 136.107 124.802 149.74 1 20.82 ? CBD HEM 503 A 1 
HETATM 36 C CGD HEM . . . D 4 137.053 124.486 150.845 1 28.96 ? CGD HEM 503 A 1 
HETATM 37 O O1D HEM . . . D 4 136.763 124.737 151.991 1 42.06 ? O1D HEM 503 A 1 
HETATM 38 O O2D HEM . . . D 4 138.148 123.964 150.69 1 41.05 ? O2D HEM 503 A 1 
HETATM 39 N NA HEM . . . D 4 133.086 129.732 149.07 1 29.96 ? NA HEM 503 A 1 
HETATM 40 N NB HEM . . . D 4 131.4 130.79 147.048 1 34.46 ? NB HEM 503 A 1 
HETATM 41 N NC HEM . . . D 4 132.384 128.832 145.128 1 33.87 ? NC HEM 503 A 1 
HETATM 42 N ND HEM . . . D 4 134.061 127.793 147.191 1 26.85 ? ND HEM 503 A 1 
HETATM 43 FE FE HEM . . . D 4 132.784 129.203 147.172 1 41.57 ? FE HEM 503 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#