data_8QT9 # _model_server_result.job_id Ya79oeYU19y87hP3dNi4Tw _model_server_result.datetime_utc '2024-10-10 12:18:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qt9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 8QT9 # _exptl.entry_id 8QT9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QT9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QT9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 68 A HIS 69 1_555 C FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc2 A NE2 HIS 82 A HIS 83 1_555 D FE HEM . A HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc3 A NE2 HIS 128 A HIS 129 1_555 C FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc4 A NE2 HIS 141 A HIS 142 1_555 D FE HEM . A HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 220 n n CHA C4D HEM doub 221 n n CHA HHA HEM sing 222 n n CHB C4A HEM sing 223 n n CHB C1B HEM doub 224 n n CHB HHB HEM sing 225 n n CHC C4B HEM sing 226 n n CHC C1C HEM doub 227 n n CHC HHC HEM sing 228 n n CHD C4C HEM doub 229 n n CHD C1D HEM sing 230 n n CHD HHD HEM sing 231 n n C1A C2A HEM doub 232 n y C1A NA HEM sing 233 n y C2A C3A HEM sing 234 n y C2A CAA HEM sing 235 n n C3A C4A HEM doub 236 n y C3A CMA HEM sing 237 n n C4A NA HEM sing 238 n y CMA HMA HEM sing 239 n n CMA HMAA HEM sing 240 n n CMA HMAB HEM sing 241 n n CAA CBA HEM sing 242 n n CAA HAA HEM sing 243 n n CAA HAAA HEM sing 244 n n CBA CGA HEM sing 245 n n CBA HBA HEM sing 246 n n CBA HBAA HEM sing 247 n n CGA O1A HEM doub 248 n n CGA O2A HEM sing 249 n n C1B C2B HEM sing 250 n n C1B NB HEM sing 251 n n C2B C3B HEM doub 252 n n C2B CMB HEM sing 253 n n C3B C4B HEM sing 254 n n C3B CAB HEM sing 255 n n C4B NB HEM doub 256 n n CMB HMB HEM sing 257 n n CMB HMBA HEM sing 258 n n CMB HMBB HEM sing 259 n n CAB CBB HEM doub 260 n n CAB HAB HEM sing 261 n n CBB HBB HEM sing 262 n n CBB HBBA HEM sing 263 n n C1C C2C HEM sing 264 n y C1C NC HEM sing 265 n y C2C C3C HEM doub 266 n y C2C CMC HEM sing 267 n n C3C C4C HEM sing 268 n y C3C CAC HEM sing 269 n n C4C NC HEM sing 270 n y CMC HMC HEM sing 271 n n CMC HMCA HEM sing 272 n n CMC HMCB HEM sing 273 n n CAC CBC HEM doub 274 n n CAC HAC HEM sing 275 n n CBC HBC HEM sing 276 n n CBC HBCA HEM sing 277 n n C1D C2D HEM sing 278 n n C1D ND HEM doub 279 n n C2D C3D HEM doub 280 n n C2D CMD HEM sing 281 n n C3D C4D HEM sing 282 n n C3D CAD HEM sing 283 n n C4D ND HEM sing 284 n n CMD HMD HEM sing 285 n n CMD HMDA HEM sing 286 n n CMD HMDB HEM sing 287 n n CAD CBD HEM sing 288 n n CAD HAD HEM sing 289 n n CAD HADA HEM sing 290 n n CBD CGD HEM sing 291 n n CBD HBD HEM sing 292 n n CBD HBDA HEM sing 293 n n CGD O1D HEM doub 294 n n CGD O2D HEM sing 295 n n O2A H2A HEM sing 296 n n O2D H2D HEM sing 297 n n FE NA HEM sing 298 n n FE NB HEM sing 299 n n FE NC HEM sing 300 n n FE ND HEM sing 301 n n # _atom_sites.entry_id 8QT9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 501 506 FAD FAD . C 3 HEM A 1 502 507 HEM HEM . D 3 HEM A 1 503 508 HEM HEM . E 4 NAI A 1 504 509 NAI NAI . F 5 HOH A 1 601 4 HOH HOH . F 5 HOH A 2 602 48 HOH HOH . F 5 HOH A 3 603 51 HOH HOH . F 5 HOH A 4 604 2 HOH HOH . F 5 HOH A 5 605 60 HOH HOH . F 5 HOH A 6 606 31 HOH HOH . F 5 HOH A 7 607 9 HOH HOH . F 5 HOH A 8 608 49 HOH HOH . F 5 HOH A 9 609 44 HOH HOH . F 5 HOH A 10 610 52 HOH HOH . F 5 HOH A 11 611 6 HOH HOH . F 5 HOH A 12 612 62 HOH HOH . F 5 HOH A 13 613 57 HOH HOH . F 5 HOH A 14 614 42 HOH HOH . F 5 HOH A 15 615 59 HOH HOH . F 5 HOH A 16 616 54 HOH HOH . F 5 HOH A 17 617 3 HOH HOH . F 5 HOH A 18 618 7 HOH HOH . F 5 HOH A 19 619 22 HOH HOH . F 5 HOH A 20 620 66 HOH HOH . F 5 HOH A 21 621 39 HOH HOH . F 5 HOH A 22 622 11 HOH HOH . F 5 HOH A 23 623 37 HOH HOH . F 5 HOH A 24 624 26 HOH HOH . F 5 HOH A 25 625 35 HOH HOH . F 5 HOH A 26 626 38 HOH HOH . F 5 HOH A 27 627 15 HOH HOH . F 5 HOH A 28 628 36 HOH HOH . F 5 HOH A 29 629 53 HOH HOH . F 5 HOH A 30 630 14 HOH HOH . F 5 HOH A 31 631 19 HOH HOH . F 5 HOH A 32 632 12 HOH HOH . F 5 HOH A 33 633 16 HOH HOH . F 5 HOH A 34 634 46 HOH HOH . F 5 HOH A 35 635 10 HOH HOH . F 5 HOH A 36 636 8 HOH HOH . F 5 HOH A 37 637 63 HOH HOH . F 5 HOH A 38 638 5 HOH HOH . F 5 HOH A 39 639 43 HOH HOH . F 5 HOH A 40 640 40 HOH HOH . F 5 HOH A 41 641 33 HOH HOH . F 5 HOH A 42 642 21 HOH HOH . F 5 HOH A 43 643 28 HOH HOH . F 5 HOH A 44 644 61 HOH HOH . F 5 HOH A 45 645 47 HOH HOH . F 5 HOH A 46 646 18 HOH HOH . F 5 HOH A 47 647 67 HOH HOH . F 5 HOH A 48 648 30 HOH HOH . F 5 HOH A 49 649 20 HOH HOH . F 5 HOH A 50 650 68 HOH HOH . F 5 HOH A 51 651 23 HOH HOH . F 5 HOH A 52 652 41 HOH HOH . F 5 HOH A 53 653 65 HOH HOH . F 5 HOH A 54 654 27 HOH HOH . F 5 HOH A 55 655 34 HOH HOH . F 5 HOH A 56 656 1 HOH HOH . F 5 HOH A 57 657 45 HOH HOH . F 5 HOH A 58 658 24 HOH HOH . F 5 HOH A 59 659 17 HOH HOH . F 5 HOH A 60 660 13 HOH HOH . F 5 HOH A 61 661 29 HOH HOH . F 5 HOH A 62 662 50 HOH HOH . F 5 HOH A 63 663 56 HOH HOH . F 5 HOH A 64 664 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 3 149.96 138.655 163.305 1 21.61 ? CHA HEM 503 A 1 HETATM 2 C CHB HEM . . . D 3 147.498 142.841 163.328 1 21.26 ? CHB HEM 503 A 1 HETATM 3 C CHC HEM . . . D 3 146.916 142.449 158.53 1 6.65 ? CHC HEM 503 A 1 HETATM 4 C CHD HEM . . . D 3 148.959 138.058 158.605 1 19.03 ? CHD HEM 503 A 1 HETATM 5 C C1A HEM . . . D 3 149.356 139.819 163.724 1 17.49 ? C1A HEM 503 A 1 HETATM 6 C C2A HEM . . . D 3 149.333 140.315 165.078 1 21.02 ? C2A HEM 503 A 1 HETATM 7 C C3A HEM . . . D 3 148.66 141.465 165.094 1 19.49 ? C3A HEM 503 A 1 HETATM 8 C C4A HEM . . . D 3 148.224 141.747 163.744 1 16.67 ? C4A HEM 503 A 1 HETATM 9 C CMA HEM . . . D 3 148.389 142.345 166.332 1 23.33 ? CMA HEM 503 A 1 HETATM 10 C CAA HEM . . . D 3 149.986 139.608 166.283 1 24.98 ? CAA HEM 503 A 1 HETATM 11 C CBA HEM . . . D 3 148.905 138.889 167.084 1 19.72 ? CBA HEM 503 A 1 HETATM 12 C CGA HEM . . . D 3 149.449 137.582 167.581 1 33.24 ? CGA HEM 503 A 1 HETATM 13 O O1A HEM . . . D 3 150.472 137.112 167.021 1 41.43 ? O1A HEM 503 A 1 HETATM 14 O O2A HEM . . . D 3 148.857 137.008 168.529 1 39.59 ? O2A HEM 503 A 1 HETATM 15 C C1B HEM . . . D 3 147.19 143.148 162.021 1 20.55 ? C1B HEM 503 A 1 HETATM 16 C C2B HEM . . . D 3 146.667 144.405 161.537 1 25.38 ? C2B HEM 503 A 1 HETATM 17 C C3B HEM . . . D 3 146.504 144.314 160.217 1 19.07 ? C3B HEM 503 A 1 HETATM 18 C C4B HEM . . . D 3 146.92 142.981 159.804 1 11.56 ? C4B HEM 503 A 1 HETATM 19 C CMB HEM . . . D 3 146.35 145.648 162.394 1 22.82 ? CMB HEM 503 A 1 HETATM 20 C CAB HEM . . . D 3 145.96 145.471 159.348 1 20.41 ? CAB HEM 503 A 1 HETATM 21 C CBB HEM . . . D 3 145.828 145.38 158.023 1 27.9 ? CBB HEM 503 A 1 HETATM 22 C C1C HEM . . . D 3 147.303 141.181 158.161 1 16.41 ? C1C HEM 503 A 1 HETATM 23 C C2C HEM . . . D 3 146.977 140.514 156.915 1 26.38 ? C2C HEM 503 A 1 HETATM 24 C C3C HEM . . . D 3 147.542 139.291 156.941 1 23.72 ? C3C HEM 503 A 1 HETATM 25 C C4C HEM . . . D 3 148.243 139.16 158.198 1 11.07 ? C4C HEM 503 A 1 HETATM 26 C CMC HEM . . . D 3 146.115 141.161 155.806 1 19.29 ? CMC HEM 503 A 1 HETATM 27 C CAC HEM . . . D 3 147.535 138.153 155.888 1 19.04 ? CAC HEM 503 A 1 HETATM 28 C CBC HEM . . . D 3 147.013 138.251 154.663 1 31.2 ? CBC HEM 503 A 1 HETATM 29 C C1D HEM . . . D 3 149.471 137.855 159.865 1 23 ? C1D HEM 503 A 1 HETATM 30 C C2D HEM . . . D 3 150.323 136.765 160.285 1 17.54 ? C2D HEM 503 A 1 HETATM 31 C C3D HEM . . . D 3 150.598 136.927 161.578 1 27.34 ? C3D HEM 503 A 1 HETATM 32 C C4D HEM . . . D 3 149.935 138.132 162.032 1 17.89 ? C4D HEM 503 A 1 HETATM 33 C CMD HEM . . . D 3 150.823 135.61 159.394 1 15.46 ? CMD HEM 503 A 1 HETATM 34 C CAD HEM . . . D 3 151.473 135.987 162.435 1 22.97 ? CAD HEM 503 A 1 HETATM 35 C CBD HEM . . . D 3 150.566 135.285 163.439 1 17.27 ? CBD HEM 503 A 1 HETATM 36 C CGD HEM . . . D 3 151.365 134.429 164.38 1 22 ? CGD HEM 503 A 1 HETATM 37 O O1D HEM . . . D 3 150.903 134.222 165.527 1 39.47 ? O1D HEM 503 A 1 HETATM 38 O O2D HEM . . . D 3 152.463 133.96 163.997 1 32.72 ? O2D HEM 503 A 1 HETATM 39 N NA HEM . . . D 3 148.669 140.718 162.935 1 18.28 ? NA HEM 503 A 1 HETATM 40 N NB HEM . . . D 3 147.33 142.305 160.937 1 19.42 ? NB HEM 503 A 1 HETATM 41 N NC HEM . . . D 3 148.075 140.325 158.916 1 18.7 ? NC HEM 503 A 1 HETATM 42 N ND HEM . . . D 3 149.256 138.67 160.959 1 26.45 ? ND HEM 503 A 1 HETATM 43 FE FE HEM . . . D 3 148.279 140.473 160.949 1 39.38 ? FE HEM 503 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 43 #