data_8QT9
#
_model_server_result.job_id            Z6RUNfpxkgD6xfpBBKNIDw 
_model_server_result.datetime_utc      '2024-10-10 12:13:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8qt9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":504}' 
#
_entry.id    8QT9 
#
_exptl.entry_id    8QT9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              665.441 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8QT9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8QT9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 68 A HIS 69 1_555 C FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc2 A NE2 HIS 82 A HIS 83 1_555 D FE HEM . A HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc3 A NE2 HIS 128 A HIS 129 1_555 C FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc4 A NE2 HIS 141 A HIS 142 1_555 D FE HEM . A HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
#
_chem_comp.formula           'C21 H29 N7 O14 P2' 
_chem_comp.formula_weight    665.441 
_chem_comp.id                NAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     NADH 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAI doub 410 n n 
PA O2A NAI sing 411 n n 
PA O5B NAI sing 412 n n 
PA O3 NAI sing 413 n n 
O2A HOA2 NAI sing 414 n n 
O5B C5B NAI sing 415 n n 
C5B C4B NAI sing 416 n n 
C5B H51A NAI sing 417 n n 
C5B H52A NAI sing 418 n n 
C4B O4B NAI sing 419 n n 
C4B C3B NAI sing 420 n n 
C4B H4B NAI sing 421 n n 
O4B C1B NAI sing 422 n n 
C3B O3B NAI sing 423 n n 
C3B C2B NAI sing 424 n n 
C3B H3B NAI sing 425 n n 
O3B HO3A NAI sing 426 n n 
C2B O2B NAI sing 427 n n 
C2B C1B NAI sing 428 n n 
C2B H2B NAI sing 429 n n 
O2B HO2A NAI sing 430 n n 
C1B N9A NAI sing 431 n n 
C1B H1B NAI sing 432 n n 
N9A C8A NAI sing 433 n y 
N9A C4A NAI sing 434 n y 
C8A N7A NAI doub 435 n y 
C8A H8A NAI sing 436 n n 
N7A C5A NAI sing 437 n y 
C5A C6A NAI sing 438 n y 
C5A C4A NAI doub 439 n y 
C6A N6A NAI sing 440 n n 
C6A N1A NAI doub 441 n y 
N6A H61A NAI sing 442 n n 
N6A H62A NAI sing 443 n n 
N1A C2A NAI sing 444 n y 
C2A N3A NAI doub 445 n y 
C2A H2A NAI sing 446 n n 
N3A C4A NAI sing 447 n y 
O3 PN NAI sing 448 n n 
PN O1N NAI sing 449 n n 
PN O2N NAI doub 450 n n 
PN O5D NAI sing 451 n n 
O1N HO1N NAI sing 452 n n 
O5D C5D NAI sing 453 n n 
C5D C4D NAI sing 454 n n 
C5D H51N NAI sing 455 n n 
C5D H52N NAI sing 456 n n 
C4D O4D NAI sing 457 n n 
C4D C3D NAI sing 458 n n 
C4D H4D NAI sing 459 n n 
O4D C1D NAI sing 460 n n 
C3D O3D NAI sing 461 n n 
C3D C2D NAI sing 462 n n 
C3D H3D NAI sing 463 n n 
O3D HO3N NAI sing 464 n n 
C2D O2D NAI sing 465 n n 
C2D C1D NAI sing 466 n n 
C2D H2D NAI sing 467 n n 
O2D HO2N NAI sing 468 n n 
C1D N1N NAI sing 469 n n 
C1D H1D NAI sing 470 n n 
N1N C2N NAI sing 471 n n 
N1N C6N NAI sing 472 n n 
C2N C3N NAI doub 473 n n 
C2N H2N NAI sing 474 n n 
C3N C7N NAI sing 475 n n 
C3N C4N NAI sing 476 n n 
C7N O7N NAI doub 477 n n 
C7N N7N NAI sing 478 n n 
N7N H71N NAI sing 479 n n 
N7N H72N NAI sing 480 n n 
C4N C5N NAI sing 481 n n 
C4N H4N NAI sing 482 n n 
C4N H42N NAI sing 483 n n 
C5N C6N NAI doub 484 n n 
C5N H5N NAI sing 485 n n 
C6N H6N NAI sing 486 n n 
#
_atom_sites.entry_id                     8QT9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 501 506 FAD FAD . 
C 3 HEM A 1 502 507 HEM HEM . 
D 3 HEM A 1 503 508 HEM HEM . 
E 4 NAI A 1 504 509 NAI NAI . 
F 5 HOH A 1 601 4 HOH HOH . 
F 5 HOH A 2 602 48 HOH HOH . 
F 5 HOH A 3 603 51 HOH HOH . 
F 5 HOH A 4 604 2 HOH HOH . 
F 5 HOH A 5 605 60 HOH HOH . 
F 5 HOH A 6 606 31 HOH HOH . 
F 5 HOH A 7 607 9 HOH HOH . 
F 5 HOH A 8 608 49 HOH HOH . 
F 5 HOH A 9 609 44 HOH HOH . 
F 5 HOH A 10 610 52 HOH HOH . 
F 5 HOH A 11 611 6 HOH HOH . 
F 5 HOH A 12 612 62 HOH HOH . 
F 5 HOH A 13 613 57 HOH HOH . 
F 5 HOH A 14 614 42 HOH HOH . 
F 5 HOH A 15 615 59 HOH HOH . 
F 5 HOH A 16 616 54 HOH HOH . 
F 5 HOH A 17 617 3 HOH HOH . 
F 5 HOH A 18 618 7 HOH HOH . 
F 5 HOH A 19 619 22 HOH HOH . 
F 5 HOH A 20 620 66 HOH HOH . 
F 5 HOH A 21 621 39 HOH HOH . 
F 5 HOH A 22 622 11 HOH HOH . 
F 5 HOH A 23 623 37 HOH HOH . 
F 5 HOH A 24 624 26 HOH HOH . 
F 5 HOH A 25 625 35 HOH HOH . 
F 5 HOH A 26 626 38 HOH HOH . 
F 5 HOH A 27 627 15 HOH HOH . 
F 5 HOH A 28 628 36 HOH HOH . 
F 5 HOH A 29 629 53 HOH HOH . 
F 5 HOH A 30 630 14 HOH HOH . 
F 5 HOH A 31 631 19 HOH HOH . 
F 5 HOH A 32 632 12 HOH HOH . 
F 5 HOH A 33 633 16 HOH HOH . 
F 5 HOH A 34 634 46 HOH HOH . 
F 5 HOH A 35 635 10 HOH HOH . 
F 5 HOH A 36 636 8 HOH HOH . 
F 5 HOH A 37 637 63 HOH HOH . 
F 5 HOH A 38 638 5 HOH HOH . 
F 5 HOH A 39 639 43 HOH HOH . 
F 5 HOH A 40 640 40 HOH HOH . 
F 5 HOH A 41 641 33 HOH HOH . 
F 5 HOH A 42 642 21 HOH HOH . 
F 5 HOH A 43 643 28 HOH HOH . 
F 5 HOH A 44 644 61 HOH HOH . 
F 5 HOH A 45 645 47 HOH HOH . 
F 5 HOH A 46 646 18 HOH HOH . 
F 5 HOH A 47 647 67 HOH HOH . 
F 5 HOH A 48 648 30 HOH HOH . 
F 5 HOH A 49 649 20 HOH HOH . 
F 5 HOH A 50 650 68 HOH HOH . 
F 5 HOH A 51 651 23 HOH HOH . 
F 5 HOH A 52 652 41 HOH HOH . 
F 5 HOH A 53 653 65 HOH HOH . 
F 5 HOH A 54 654 27 HOH HOH . 
F 5 HOH A 55 655 34 HOH HOH . 
F 5 HOH A 56 656 1 HOH HOH . 
F 5 HOH A 57 657 45 HOH HOH . 
F 5 HOH A 58 658 24 HOH HOH . 
F 5 HOH A 59 659 17 HOH HOH . 
F 5 HOH A 60 660 13 HOH HOH . 
F 5 HOH A 61 661 29 HOH HOH . 
F 5 HOH A 62 662 50 HOH HOH . 
F 5 HOH A 63 663 56 HOH HOH . 
F 5 HOH A 64 664 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAI . . . E 4 154.71 134.901 113.704 1 39.17 ? PA NAI 504 A 1 
HETATM 2 O O1A NAI . . . E 4 154.989 135.619 114.96 1 46.4 ? O1A NAI 504 A 1 
HETATM 3 O O2A NAI . . . E 4 155.68 133.769 113.39 1 44.62 ? O2A NAI 504 A 1 
HETATM 4 O O5B NAI . . . E 4 154.684 135.896 112.488 1 35.66 ? O5B NAI 504 A 1 
HETATM 5 C C5B NAI . . . E 4 154.745 137.324 112.69 1 36.43 ? C5B NAI 504 A 1 
HETATM 6 C C4B NAI . . . E 4 155.747 137.937 111.746 1 30 ? C4B NAI 504 A 1 
HETATM 7 O O4B NAI . . . E 4 156.724 138.691 112.5 1 35.1 ? O4B NAI 504 A 1 
HETATM 8 C C3B NAI . . . E 4 156.532 136.949 110.882 1 31.46 ? C3B NAI 504 A 1 
HETATM 9 O O3B NAI . . . E 4 156.65 137.412 109.543 1 32.67 ? O3B NAI 504 A 1 
HETATM 10 C C2B NAI . . . E 4 157.896 136.891 111.573 1 36.49 ? C2B NAI 504 A 1 
HETATM 11 O O2B NAI . . . E 4 158.945 136.599 110.659 1 44.63 ? O2B NAI 504 A 1 
HETATM 12 C C1B NAI . . . E 4 158.023 138.32 112.09 1 33.73 ? C1B NAI 504 A 1 
HETATM 13 N N9A NAI . . . E 4 158.93 138.461 113.224 1 37.67 ? N9A NAI 504 A 1 
HETATM 14 C C8A NAI . . . E 4 158.943 137.711 114.37 1 36.65 ? C8A NAI 504 A 1 
HETATM 15 N N7A NAI . . . E 4 159.878 138.051 115.222 1 41.95 ? N7A NAI 504 A 1 
HETATM 16 C C5A NAI . . . E 4 160.534 139.096 114.59 1 38.1 ? C5A NAI 504 A 1 
HETATM 17 C C6A NAI . . . E 4 161.626 139.9 114.968 1 42.18 ? C6A NAI 504 A 1 
HETATM 18 N N6A NAI . . . E 4 162.282 139.768 116.125 1 46.86 ? N6A NAI 504 A 1 
HETATM 19 N N1A NAI . . . E 4 162.03 140.858 114.105 1 42.93 ? N1A NAI 504 A 1 
HETATM 20 C C2A NAI . . . E 4 161.378 140.997 112.947 1 42.59 ? C2A NAI 504 A 1 
HETATM 21 N N3A NAI . . . E 4 160.339 140.299 112.484 1 43.8 ? N3A NAI 504 A 1 
HETATM 22 C C4A NAI . . . E 4 159.961 139.359 113.356 1 41.66 ? C4A NAI 504 A 1 
HETATM 23 O O3 NAI . . . E 4 153.247 134.275 113.702 1 37.84 ? O3 NAI 504 A 1 
HETATM 24 P PN NAI . . . E 4 151.828 134.64 114.322 1 41.73 ? PN NAI 504 A 1 
HETATM 25 O O1N NAI . . . E 4 150.773 134.061 113.382 1 42.72 ? O1N NAI 504 A 1 
HETATM 26 O O2N NAI . . . E 4 151.697 136.082 114.54 1 42.24 ? O2N NAI 504 A 1 
HETATM 27 O O5D NAI . . . E 4 151.781 133.841 115.688 1 38.65 ? O5D NAI 504 A 1 
HETATM 28 C C5D NAI . . . E 4 152.842 133.952 116.66 1 33.03 ? C5D NAI 504 A 1 
HETATM 29 C C4D NAI . . . E 4 152.276 134.287 118.02 1 34.47 ? C4D NAI 504 A 1 
HETATM 30 O O4D NAI . . . E 4 152.394 135.707 118.261 1 41.64 ? O4D NAI 504 A 1 
HETATM 31 C C3D NAI . . . E 4 150.807 133.921 118.241 1 34.67 ? C3D NAI 504 A 1 
HETATM 32 O O3D NAI . . . E 4 150.612 133.288 119.5 1 40.16 ? O3D NAI 504 A 1 
HETATM 33 C C2D NAI . . . E 4 150.09 135.273 118.171 1 38.49 ? C2D NAI 504 A 1 
HETATM 34 O O2D NAI . . . E 4 148.938 135.302 119.006 1 39.53 ? O2D NAI 504 A 1 
HETATM 35 C C1D NAI . . . E 4 151.158 136.221 118.71 1 36.33 ? C1D NAI 504 A 1 
HETATM 36 N N1N NAI . . . E 4 151.02 137.587 118.221 1 32.69 ? N1N NAI 504 A 1 
HETATM 37 C C2N NAI . . . E 4 150.94 138.614 119.095 1 27.14 ? C2N NAI 504 A 1 
HETATM 38 C C3N NAI . . . E 4 150.516 139.834 118.702 1 21.52 ? C3N NAI 504 A 1 
HETATM 39 C C7N NAI . . . E 4 150.566 140.907 119.691 1 23.75 ? C7N NAI 504 A 1 
HETATM 40 O O7N NAI . . . E 4 151.125 140.763 120.785 1 35.44 ? O7N NAI 504 A 1 
HETATM 41 N N7N NAI . . . E 4 149.978 142.052 119.37 1 29.24 ? N7N NAI 504 A 1 
HETATM 42 C C4N NAI . . . E 4 150.122 140.112 117.283 1 30.84 ? C4N NAI 504 A 1 
HETATM 43 C C5N NAI . . . E 4 150.513 138.975 116.414 1 31.16 ? C5N NAI 504 A 1 
HETATM 44 C C6N NAI . . . E 4 150.968 137.826 116.883 1 28.34 ? C6N NAI 504 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#