data_8QTM # _model_server_result.job_id TN7oMPxq-FBex_FLAyHIFw _model_server_result.datetime_utc '2024-11-30 02:54:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qtm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1001}' # _entry.id 8QTM # _exptl.entry_id 8QTM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-hydroxybutanedioic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QTM _cell.length_a 242.871 _cell.length_b 242.871 _cell.length_c 396.113 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QTM _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall 'I 4bw 2bw' _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,I,J,K,L,Y,Z 1 1 A,B,D,E,F,G,H,I,J,K,L,Y,Z 1 3 C,M,N,O,P,Q,R,S,T,U,V,W,X,AA 2 1 C,M,N,O,P,Q,R,S,T,U,V,W,X,AA 2 2 C,M,N,O,P,Q,R,S,T,U,V,W,X,AA 2 3 C,M,N,O,P,Q,R,S,T,U,V,W,X,AA 2 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 242.871 242.871 396.113 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 242.871 242.871 0 4 'crystal symmetry operation' 15_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 396.113 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 H N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 J O4 PEG . B PEG 1003 1_555 K C1 PEG . B PEG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale2 R O4 PEG . C PEG 1006 1_555 S C1 PEG . C PEG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale3 T O4 PEG . C PEG 1008 1_555 U C1 PEG . C PEG 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale4 W O4 PEG . C PEG 1011 1_555 X C1 PEG . C PEG 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id LMR _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-hydroxybutanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms L-Malate # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A LMR doub 194 n n C1 O1B LMR sing 195 n n C1 C2 LMR sing 196 n n C2 O2 LMR sing 197 n n C2 C3 LMR sing 198 n n C3 C4 LMR sing 199 n n C4 O4A LMR sing 200 n n C4 O4B LMR doub 201 n n C2 H2 LMR sing 202 n n O2 HO2 LMR sing 203 n n C3 H3 LMR sing 204 n n C3 H3A LMR sing 205 n n O1B H4 LMR sing 206 n n O4A H5 LMR sing 207 n n # _atom_sites.entry_id 8QTM _atom_sites.fract_transf_matrix[1][1] 0.004117 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004117 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 LMR A 1 1001 1001 LMR LMR . E 3 CL A 1 1002 2 CL CL . F 4 PEG A 1 1003 9 PEG PEG . G 4 PEG A 1 1004 18 PEG PEG . H 2 LMR B 1 1001 1002 LMR LMR . I 3 CL B 1 1002 1 CL CL . J 4 PEG B 1 1003 10 PEG PEG . K 4 PEG B 1 1004 11 PEG PEG . L 4 PEG B 1 1005 12 PEG PEG . M 2 LMR C 1 1001 1003 LMR LMR . N 3 CL C 1 1002 3 CL CL . O 3 CL C 1 1003 4 CL CL . P 3 CL C 1 1004 5 CL CL . Q 3 CL C 1 1005 6 CL CL . R 4 PEG C 1 1006 7 PEG PEG . S 4 PEG C 1 1007 8 PEG PEG . T 4 PEG C 1 1008 13 PEG PEG . U 4 PEG C 1 1009 14 PEG PEG . V 4 PEG C 1 1010 15 PEG PEG . W 4 PEG C 1 1011 16 PEG PEG . X 4 PEG C 1 1012 17 PEG PEG . Y 5 HOH A 1 1101 35 HOH HOH . Y 5 HOH A 2 1102 71 HOH HOH . Y 5 HOH A 3 1103 125 HOH HOH . Y 5 HOH A 4 1104 21 HOH HOH . Y 5 HOH A 5 1105 31 HOH HOH . Y 5 HOH A 6 1106 33 HOH HOH . Y 5 HOH A 7 1107 32 HOH HOH . Y 5 HOH A 8 1108 139 HOH HOH . Y 5 HOH A 9 1109 117 HOH HOH . Y 5 HOH A 10 1110 38 HOH HOH . Y 5 HOH A 11 1111 123 HOH HOH . Y 5 HOH A 12 1112 120 HOH HOH . Y 5 HOH A 13 1113 36 HOH HOH . Y 5 HOH A 14 1114 124 HOH HOH . Y 5 HOH A 15 1115 114 HOH HOH . Y 5 HOH A 16 1116 23 HOH HOH . Y 5 HOH A 17 1117 119 HOH HOH . Y 5 HOH A 18 1118 26 HOH HOH . Y 5 HOH A 19 1119 118 HOH HOH . Y 5 HOH A 20 1120 113 HOH HOH . Y 5 HOH A 21 1121 24 HOH HOH . Y 5 HOH A 22 1122 20 HOH HOH . Y 5 HOH A 23 1123 25 HOH HOH . Y 5 HOH A 24 1124 122 HOH HOH . Y 5 HOH A 25 1125 115 HOH HOH . Y 5 HOH A 26 1126 74 HOH HOH . Y 5 HOH A 27 1127 37 HOH HOH . Y 5 HOH A 28 1128 121 HOH HOH . Y 5 HOH A 29 1129 140 HOH HOH . Y 5 HOH A 30 1130 29 HOH HOH . Y 5 HOH A 31 1131 34 HOH HOH . Y 5 HOH A 32 1132 50 HOH HOH . Y 5 HOH A 33 1133 30 HOH HOH . Y 5 HOH A 34 1134 111 HOH HOH . Y 5 HOH A 35 1135 73 HOH HOH . Y 5 HOH A 36 1136 19 HOH HOH . Y 5 HOH A 37 1137 138 HOH HOH . Y 5 HOH A 38 1138 79 HOH HOH . Y 5 HOH A 39 1139 112 HOH HOH . Z 5 HOH B 1 1101 144 HOH HOH . Z 5 HOH B 2 1102 132 HOH HOH . Z 5 HOH B 3 1103 43 HOH HOH . Z 5 HOH B 4 1104 45 HOH HOH . Z 5 HOH B 5 1105 42 HOH HOH . Z 5 HOH B 6 1106 39 HOH HOH . Z 5 HOH B 7 1107 133 HOH HOH . Z 5 HOH B 8 1108 22 HOH HOH . Z 5 HOH B 9 1109 143 HOH HOH . Z 5 HOH B 10 1110 142 HOH HOH . Z 5 HOH B 11 1111 135 HOH HOH . Z 5 HOH B 12 1112 137 HOH HOH . Z 5 HOH B 13 1113 136 HOH HOH . Z 5 HOH B 14 1114 40 HOH HOH . Z 5 HOH B 15 1115 27 HOH HOH . Z 5 HOH B 16 1116 116 HOH HOH . Z 5 HOH B 17 1117 128 HOH HOH . Z 5 HOH B 18 1118 130 HOH HOH . Z 5 HOH B 19 1119 141 HOH HOH . Z 5 HOH B 20 1120 134 HOH HOH . Z 5 HOH B 21 1121 129 HOH HOH . Z 5 HOH B 22 1122 127 HOH HOH . Z 5 HOH B 23 1123 131 HOH HOH . AA 5 HOH C 1 1101 78 HOH HOH . AA 5 HOH C 2 1102 108 HOH HOH . AA 5 HOH C 3 1103 62 HOH HOH . AA 5 HOH C 4 1104 64 HOH HOH . AA 5 HOH C 5 1105 41 HOH HOH . AA 5 HOH C 6 1106 60 HOH HOH . AA 5 HOH C 7 1107 110 HOH HOH . AA 5 HOH C 8 1108 63 HOH HOH . AA 5 HOH C 9 1109 82 HOH HOH . AA 5 HOH C 10 1110 76 HOH HOH . AA 5 HOH C 11 1111 88 HOH HOH . AA 5 HOH C 12 1112 80 HOH HOH . AA 5 HOH C 13 1113 47 HOH HOH . AA 5 HOH C 14 1114 102 HOH HOH . AA 5 HOH C 15 1115 77 HOH HOH . AA 5 HOH C 16 1116 55 HOH HOH . AA 5 HOH C 17 1117 106 HOH HOH . AA 5 HOH C 18 1118 54 HOH HOH . AA 5 HOH C 19 1119 65 HOH HOH . AA 5 HOH C 20 1120 48 HOH HOH . AA 5 HOH C 21 1121 83 HOH HOH . AA 5 HOH C 22 1122 95 HOH HOH . AA 5 HOH C 23 1123 44 HOH HOH . AA 5 HOH C 24 1124 86 HOH HOH . AA 5 HOH C 25 1125 104 HOH HOH . AA 5 HOH C 26 1126 81 HOH HOH . AA 5 HOH C 27 1127 96 HOH HOH . AA 5 HOH C 28 1128 107 HOH HOH . AA 5 HOH C 29 1129 85 HOH HOH . AA 5 HOH C 30 1130 146 HOH HOH . AA 5 HOH C 31 1131 97 HOH HOH . AA 5 HOH C 32 1132 93 HOH HOH . AA 5 HOH C 33 1133 67 HOH HOH . AA 5 HOH C 34 1134 68 HOH HOH . AA 5 HOH C 35 1135 75 HOH HOH . AA 5 HOH C 36 1136 90 HOH HOH . AA 5 HOH C 37 1137 100 HOH HOH . AA 5 HOH C 38 1138 57 HOH HOH . AA 5 HOH C 39 1139 99 HOH HOH . AA 5 HOH C 40 1140 101 HOH HOH . AA 5 HOH C 41 1141 59 HOH HOH . AA 5 HOH C 42 1142 49 HOH HOH . AA 5 HOH C 43 1143 53 HOH HOH . AA 5 HOH C 44 1144 70 HOH HOH . AA 5 HOH C 45 1145 89 HOH HOH . AA 5 HOH C 46 1146 28 HOH HOH . AA 5 HOH C 47 1147 72 HOH HOH . AA 5 HOH C 48 1148 103 HOH HOH . AA 5 HOH C 49 1149 87 HOH HOH . AA 5 HOH C 50 1150 91 HOH HOH . AA 5 HOH C 51 1151 52 HOH HOH . AA 5 HOH C 52 1152 109 HOH HOH . AA 5 HOH C 53 1153 94 HOH HOH . AA 5 HOH C 54 1154 84 HOH HOH . AA 5 HOH C 55 1155 145 HOH HOH . AA 5 HOH C 56 1156 98 HOH HOH . AA 5 HOH C 57 1157 51 HOH HOH . AA 5 HOH C 58 1158 61 HOH HOH . AA 5 HOH C 59 1159 69 HOH HOH . AA 5 HOH C 60 1160 46 HOH HOH . AA 5 HOH C 61 1161 56 HOH HOH . AA 5 HOH C 62 1162 92 HOH HOH . AA 5 HOH C 63 1163 66 HOH HOH . AA 5 HOH C 64 1164 105 HOH HOH . AA 5 HOH C 65 1165 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMR . . . M 2 146.614 164.943 223.893 1 48.74 ? C1 LMR 1001 C 1 HETATM 2 O O1A LMR . . . M 2 146.063 164.449 224.926 1 44.49 ? O1A LMR 1001 C 1 HETATM 3 O O1B LMR . . . M 2 147.84 165.283 223.871 1 27.11 ? O1B LMR 1001 C 1 HETATM 4 C C2 LMR . . . M 2 145.788 165.116 222.688 1 51.68 ? C2 LMR 1001 C 1 HETATM 5 O O2 LMR . . . M 2 144.937 163.963 222.548 1 61.3 ? O2 LMR 1001 C 1 HETATM 6 C C3 LMR . . . M 2 144.93 166.36 222.872 1 49.55 ? C3 LMR 1001 C 1 HETATM 7 C C4 LMR . . . M 2 144.35 166.757 221.534 1 47.72 ? C4 LMR 1001 C 1 HETATM 8 O O4A LMR . . . M 2 143.146 167.158 221.46 1 51.51 ? O4A LMR 1001 C 1 HETATM 9 O O4B LMR . . . M 2 145.058 166.695 220.499 1 57.14 ? O4B LMR 1001 C 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #