data_8QTN
#
_model_server_result.job_id            cGYHq0rZ7yoxmHv8YJAgWw 
_model_server_result.datetime_utc      '2025-08-01 05:57:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8qtn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":201}' 
#
_entry.id    8QTN 
#
_exptl.entry_id    8QTN 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              825.059 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2S)-1-hexadecanoyloxy-3-[hydroxy-[(2S,3R,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy-phosphoryl]oxy-propan-2-yl] heptadecanoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8QTN 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8QTN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 J N N 
? 6 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 36 C CYS 53 1_555 C SG CYS 58 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 C SG CYS 85 C CYS 102 1_555 C SG CYS 125 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 D SG CYS 85 D CYS 102 1_555 D SG CYS 125 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
covale ? covale1 A NE2 HIS 181 A HIS 255 1_555 F C26 7PO . A 7PO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? 
covale ? covale2 B NE2 HIS 181 B HIS 255 1_555 I C26 7PO . B 7PO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? 
#
_chem_comp.formula           'C42 H81 O13 P' 
_chem_comp.formula_weight    825.059 
_chem_comp.id                PIJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2S)-1-hexadecanoyloxy-3-[hydroxy-[(2S,3R,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy-phosphoryl]oxy-propan-2-yl] heptadecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O11 PIJ doub 473 n n 
P1 O12 PIJ sing 474 n n 
P1 O13 PIJ sing 475 n n 
P1 OI1 PIJ sing 476 n n 
O12 C21 PIJ sing 477 n n 
C21 C24 PIJ sing 478 n n 
C24 C25 PIJ sing 479 n n 
C24 O29 PIJ sing 480 n n 
C25 O26 PIJ sing 481 n n 
O26 CO6 PIJ sing 482 n n 
O29 CO9 PIJ sing 483 n n 
OC6 CO6 PIJ doub 484 n n 
OC9 CO9 PIJ doub 485 n n 
CI1 OI1 PIJ sing 486 n n 
CI1 CI2 PIJ sing 487 n n 
CI1 CI6 PIJ sing 488 n n 
CI2 OI2 PIJ sing 489 n n 
CI2 CI3 PIJ sing 490 n n 
CI3 OI3 PIJ sing 491 n n 
CI3 CI4 PIJ sing 492 n n 
CI4 OI4 PIJ sing 493 n n 
CI4 CI5 PIJ sing 494 n n 
CI5 OI5 PIJ sing 495 n n 
CI5 CI6 PIJ sing 496 n n 
CI6 OI6 PIJ sing 497 n n 
CL1 CL2 PIJ sing 498 n n 
CL1 CO6 PIJ sing 499 n n 
CL2 CL3 PIJ sing 500 n n 
CL3 CL4 PIJ sing 501 n n 
CL4 CL5 PIJ sing 502 n n 
CL5 CL6 PIJ sing 503 n n 
CL6 CL7 PIJ sing 504 n n 
CL7 CL8 PIJ sing 505 n n 
CL8 CL9 PIJ sing 506 n n 
CL9 CLA PIJ sing 507 n n 
CLA CLB PIJ sing 508 n n 
CLB CLC PIJ sing 509 n n 
CLC CLD PIJ sing 510 n n 
CLD CLE PIJ sing 511 n n 
CLE CLF PIJ sing 512 n n 
CO9 CR1 PIJ sing 513 n n 
CR1 CR2 PIJ sing 514 n n 
CR2 CR3 PIJ sing 515 n n 
CR3 CR4 PIJ sing 516 n n 
CR4 CR5 PIJ sing 517 n n 
CR5 CR6 PIJ sing 518 n n 
CR6 CR7 PIJ sing 519 n n 
CR7 CR8 PIJ sing 520 n n 
CR8 CR9 PIJ sing 521 n n 
CR9 CRA PIJ sing 522 n n 
CRA CRB PIJ sing 523 n n 
CRB CRC PIJ sing 524 n n 
CRC CRD PIJ sing 525 n n 
CRD CRE PIJ sing 526 n n 
CRE CRF PIJ sing 527 n n 
CRF CRG PIJ sing 528 n n 
O13 HO13 PIJ sing 529 n n 
C21 H21 PIJ sing 530 n n 
C21 H21A PIJ sing 531 n n 
C24 H24 PIJ sing 532 n n 
C25 H25 PIJ sing 533 n n 
C25 H25A PIJ sing 534 n n 
CI1 HI1 PIJ sing 535 n n 
CI2 HI2 PIJ sing 536 n n 
OI2 HOI2 PIJ sing 537 n n 
CI3 HI3 PIJ sing 538 n n 
OI3 HOI3 PIJ sing 539 n n 
CI4 HI4 PIJ sing 540 n n 
OI4 HOI4 PIJ sing 541 n n 
CI5 HI5 PIJ sing 542 n n 
OI5 HOI5 PIJ sing 543 n n 
CI6 HI6 PIJ sing 544 n n 
OI6 HOI6 PIJ sing 545 n n 
CL1 HL1 PIJ sing 546 n n 
CL1 HL1A PIJ sing 547 n n 
CL2 HL2 PIJ sing 548 n n 
CL2 HL2A PIJ sing 549 n n 
CL3 HL3 PIJ sing 550 n n 
CL3 HL3A PIJ sing 551 n n 
CL4 HL4 PIJ sing 552 n n 
CL4 HL4A PIJ sing 553 n n 
CL5 HL5 PIJ sing 554 n n 
CL5 HL5A PIJ sing 555 n n 
CL6 HL6 PIJ sing 556 n n 
CL6 HL6A PIJ sing 557 n n 
CL7 HL7 PIJ sing 558 n n 
CL7 HL7A PIJ sing 559 n n 
CL8 HL8 PIJ sing 560 n n 
CL8 HL8A PIJ sing 561 n n 
CL9 HL9 PIJ sing 562 n n 
CL9 HL9A PIJ sing 563 n n 
CLA HLA PIJ sing 564 n n 
CLA HLAA PIJ sing 565 n n 
CLB HLB PIJ sing 566 n n 
CLB HLBA PIJ sing 567 n n 
CLC HLC PIJ sing 568 n n 
CLC HLCA PIJ sing 569 n n 
CLD HLD PIJ sing 570 n n 
CLD HLDA PIJ sing 571 n n 
CLE HLE PIJ sing 572 n n 
CLE HLEA PIJ sing 573 n n 
CLF HLF PIJ sing 574 n n 
CLF HLFA PIJ sing 575 n n 
CLF HLFB PIJ sing 576 n n 
CR1 HR1 PIJ sing 577 n n 
CR1 HR1A PIJ sing 578 n n 
CR2 HR2 PIJ sing 579 n n 
CR2 HR2A PIJ sing 580 n n 
CR3 HR3 PIJ sing 581 n n 
CR3 HR3A PIJ sing 582 n n 
CR4 HR4 PIJ sing 583 n n 
CR4 HR4A PIJ sing 584 n n 
CR5 HR5 PIJ sing 585 n n 
CR5 HR5A PIJ sing 586 n n 
CR6 HR6 PIJ sing 587 n n 
CR6 HR6A PIJ sing 588 n n 
CR7 HR7 PIJ sing 589 n n 
CR7 HR7A PIJ sing 590 n n 
CR8 HR8 PIJ sing 591 n n 
CR8 HR8A PIJ sing 592 n n 
CR9 HR9 PIJ sing 593 n n 
CR9 HR9A PIJ sing 594 n n 
CRA HRA PIJ sing 595 n n 
CRA HRAA PIJ sing 596 n n 
CRB HRB PIJ sing 597 n n 
CRB HRBA PIJ sing 598 n n 
CRC HRC PIJ sing 599 n n 
CRC HRCA PIJ sing 600 n n 
CRD HRD PIJ sing 601 n n 
CRD HRDA PIJ sing 602 n n 
CRE HRE PIJ sing 603 n n 
CRE HREA PIJ sing 604 n n 
CRF HRF PIJ sing 605 n n 
CRF HRFA PIJ sing 606 n n 
CRG HRG PIJ sing 607 n n 
CRG HRGA PIJ sing 608 n n 
CRG HRGB PIJ sing 609 n n 
#
_atom_sites.entry_id                     8QTN 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 3PE A 1 401 402 3PE 3PE . 
F 5 7PO A 1 402 403 7PO 26D . 
G 4 3PE B 1 401 401 3PE 3PE . 
H 4 3PE B 1 402 403 3PE 3PE . 
I 5 7PO B 1 403 404 7PO 26D . 
J 6 PIJ C 1 201 201 PIJ PIJ . 
K 7 NH4 C 1 202 202 NH4 NH4 . 
L 4 3PE D 1 401 401 3PE 3PE . 
M 6 PIJ D 1 402 402 PIJ PIJ . 
N 7 NH4 D 1 403 403 NH4 NH4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 PIJ . . . J 6 129.14 166.328 138.237 1 37.56 ? P1 PIJ 201 C 1 
HETATM 2 O O11 PIJ . . . J 6 130.029 167.017 137.269 1 41.86 ? O11 PIJ 201 C 1 
HETATM 3 O O12 PIJ . . . J 6 130.074 165.938 139.516 1 28.67 ? O12 PIJ 201 C 1 
HETATM 4 O O13 PIJ . . . J 6 128.582 165.127 137.561 1 31.15 ? O13 PIJ 201 C 1 
HETATM 5 C C21 PIJ . . . J 6 131.287 166.635 139.601 1 27.57 ? C21 PIJ 201 C 1 
HETATM 6 C C24 PIJ . . . J 6 132.239 165.892 140.562 1 35.02 ? C24 PIJ 201 C 1 
HETATM 7 C C25 PIJ . . . J 6 132.353 166.511 141.962 1 33.48 ? C25 PIJ 201 C 1 
HETATM 8 O O26 PIJ . . . J 6 133.254 165.696 142.66 1 44.35 ? O26 PIJ 201 C 1 
HETATM 9 O O29 PIJ . . . J 6 133.544 165.869 140.008 1 37.03 ? O29 PIJ 201 C 1 
HETATM 10 O OC6 PIJ . . . J 6 132.616 165.725 144.81 1 44.48 ? OC6 PIJ 201 C 1 
HETATM 11 O OC9 PIJ . . . J 6 133.484 163.697 140.351 1 36.29 ? OC9 PIJ 201 C 1 
HETATM 12 C CI1 PIJ . . . J 6 128.076 168.686 138.649 1 32.38 ? CI1 PIJ 201 C 1 
HETATM 13 O OI1 PIJ . . . J 6 127.885 167.308 138.615 1 31.08 ? OI1 PIJ 201 C 1 
HETATM 14 C CI2 PIJ . . . J 6 127.543 169.328 139.912 1 31.75 ? CI2 PIJ 201 C 1 
HETATM 15 O OI2 PIJ . . . J 6 128.57 170.087 140.463 1 28.65 ? OI2 PIJ 201 C 1 
HETATM 16 C CI3 PIJ . . . J 6 126.409 170.283 139.634 1 39.14 ? CI3 PIJ 201 C 1 
HETATM 17 O OI3 PIJ . . . J 6 125.638 170.421 140.783 1 42.3 ? OI3 PIJ 201 C 1 
HETATM 18 C CI4 PIJ . . . J 6 125.461 169.755 138.605 1 31.82 ? CI4 PIJ 201 C 1 
HETATM 19 O OI4 PIJ . . . J 6 124.49 170.733 138.479 1 38.11 ? OI4 PIJ 201 C 1 
HETATM 20 C CI5 PIJ . . . J 6 126.132 169.607 137.276 1 31.5 ? CI5 PIJ 201 C 1 
HETATM 21 O OI5 PIJ . . . J 6 125.56 168.543 136.617 1 35.33 ? OI5 PIJ 201 C 1 
HETATM 22 C CI6 PIJ . . . J 6 127.618 169.385 137.388 1 33.61 ? CI6 PIJ 201 C 1 
HETATM 23 O OI6 PIJ . . . J 6 128.048 168.665 136.286 1 38.64 ? OI6 PIJ 201 C 1 
HETATM 24 C CL1 PIJ . . . J 6 134.756 166.662 144.462 1 36.57 ? CL1 PIJ 201 C 1 
HETATM 25 C CL2 PIJ . . . J 6 136.001 165.858 144.087 1 35.28 ? CL2 PIJ 201 C 1 
HETATM 26 C CL3 PIJ . . . J 6 136.606 165.188 145.321 1 39.36 ? CL3 PIJ 201 C 1 
HETATM 27 C CL4 PIJ . . . J 6 137.975 164.575 145.059 1 36.74 ? CL4 PIJ 201 C 1 
HETATM 28 C CL5 PIJ . . . J 6 138.053 163.797 143.753 1 36.87 ? CL5 PIJ 201 C 1 
HETATM 29 C CL6 PIJ . . . J 6 138.116 162.284 143.93 1 38.93 ? CL6 PIJ 201 C 1 
HETATM 30 C CL7 PIJ . . . J 6 138.027 161.806 145.378 1 38.98 ? CL7 PIJ 201 C 1 
HETATM 31 C CL8 PIJ . . . J 6 138.746 160.487 145.602 1 36.94 ? CL8 PIJ 201 C 1 
HETATM 32 C CL9 PIJ . . . J 6 138.833 159.621 144.331 1 33.94 ? CL9 PIJ 201 C 1 
HETATM 33 C CLA PIJ . . . J 6 139.229 158.155 144.656 1 36.48 ? CLA PIJ 201 C 1 
HETATM 34 C CLB PIJ . . . J 6 138.004 157.215 144.757 1 39.88 ? CLB PIJ 201 C 1 
HETATM 35 C CLC PIJ . . . J 6 138.257 155.919 145.548 1 35.25 ? CLC PIJ 201 C 1 
HETATM 36 C CLD PIJ . . . J 6 136.977 155.512 146.275 1 35.56 ? CLD PIJ 201 C 1 
HETATM 37 C CLE PIJ . . . J 6 135.892 156.555 146.067 1 36.9 ? CLE PIJ 201 C 1 
HETATM 38 C CLF PIJ . . . J 6 134.773 156.471 147.077 1 37.19 ? CLF PIJ 201 C 1 
HETATM 39 C CO6 PIJ . . . J 6 133.45 165.989 144.019 1 47.57 ? CO6 PIJ 201 C 1 
HETATM 40 C CO9 PIJ . . . J 6 134.165 164.627 140.199 1 34.25 ? CO9 PIJ 201 C 1 
HETATM 41 C CR1 PIJ . . . J 6 135.695 164.436 140.241 1 35.43 ? CR1 PIJ 201 C 1 
HETATM 42 C CR2 PIJ . . . J 6 136.106 163.272 139.33 1 30.59 ? CR2 PIJ 201 C 1 
HETATM 43 C CR3 PIJ . . . J 6 136.99 162.256 140.062 1 34.22 ? CR3 PIJ 201 C 1 
HETATM 44 C CR4 PIJ . . . J 6 138.451 162.711 140.115 1 36.8 ? CR4 PIJ 201 C 1 
HETATM 45 C CR5 PIJ . . . J 6 139.399 161.561 139.765 1 33.57 ? CR5 PIJ 201 C 1 
HETATM 46 C CR6 PIJ . . . J 6 140.386 161.922 138.657 1 33.55 ? CR6 PIJ 201 C 1 
HETATM 47 C CR7 PIJ . . . J 6 141.493 160.876 138.573 1 36.69 ? CR7 PIJ 201 C 1 
HETATM 48 C CR8 PIJ . . . J 6 141.007 159.66 137.789 1 35.78 ? CR8 PIJ 201 C 1 
HETATM 49 C CR9 PIJ . . . J 6 142.125 158.806 137.201 1 31.57 ? CR9 PIJ 201 C 1 
HETATM 50 C CRA PIJ . . . J 6 142.594 157.711 138.158 1 39.38 ? CRA PIJ 201 C 1 
HETATM 51 C CRB PIJ . . . J 6 143.73 156.932 137.492 1 37.2 ? CRB PIJ 201 C 1 
HETATM 52 C CRC PIJ . . . J 6 144.362 157.728 136.338 1 37.95 ? CRC PIJ 201 C 1 
HETATM 53 C CRD PIJ . . . J 6 145.339 156.886 135.504 1 39.78 ? CRD PIJ 201 C 1 
HETATM 54 C CRE PIJ . . . J 6 145.481 157.406 134.072 1 38.89 ? CRE PIJ 201 C 1 
HETATM 55 C CRF PIJ . . . J 6 146.63 156.711 133.346 1 38.16 ? CRF PIJ 201 C 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           55 
#