data_8QTN
#
_model_server_result.job_id            jPXh67diOGgMLvTQS4IlFA 
_model_server_result.datetime_utc      '2025-07-31 22:10:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8qtn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":402}' 
#
_entry.id    8QTN 
#
_exptl.entry_id    8QTN 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              825.059 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2S)-1-hexadecanoyloxy-3-[hydroxy-[(2S,3R,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy-phosphoryl]oxy-propan-2-yl] heptadecanoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8QTN 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8QTN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 J N N 
? 6 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 36 C CYS 53 1_555 C SG CYS 58 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 C SG CYS 85 C CYS 102 1_555 C SG CYS 125 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 D SG CYS 85 D CYS 102 1_555 D SG CYS 125 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
covale ? covale1 A NE2 HIS 181 A HIS 255 1_555 F C26 7PO . A 7PO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? 
covale ? covale2 B NE2 HIS 181 B HIS 255 1_555 I C26 7PO . B 7PO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? 
#
_chem_comp.formula           'C42 H81 O13 P' 
_chem_comp.formula_weight    825.059 
_chem_comp.id                PIJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2S)-1-hexadecanoyloxy-3-[hydroxy-[(2S,3R,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy-phosphoryl]oxy-propan-2-yl] heptadecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O11 PIJ doub 473 n n 
P1 O12 PIJ sing 474 n n 
P1 O13 PIJ sing 475 n n 
P1 OI1 PIJ sing 476 n n 
O12 C21 PIJ sing 477 n n 
C21 C24 PIJ sing 478 n n 
C24 C25 PIJ sing 479 n n 
C24 O29 PIJ sing 480 n n 
C25 O26 PIJ sing 481 n n 
O26 CO6 PIJ sing 482 n n 
O29 CO9 PIJ sing 483 n n 
OC6 CO6 PIJ doub 484 n n 
OC9 CO9 PIJ doub 485 n n 
CI1 OI1 PIJ sing 486 n n 
CI1 CI2 PIJ sing 487 n n 
CI1 CI6 PIJ sing 488 n n 
CI2 OI2 PIJ sing 489 n n 
CI2 CI3 PIJ sing 490 n n 
CI3 OI3 PIJ sing 491 n n 
CI3 CI4 PIJ sing 492 n n 
CI4 OI4 PIJ sing 493 n n 
CI4 CI5 PIJ sing 494 n n 
CI5 OI5 PIJ sing 495 n n 
CI5 CI6 PIJ sing 496 n n 
CI6 OI6 PIJ sing 497 n n 
CL1 CL2 PIJ sing 498 n n 
CL1 CO6 PIJ sing 499 n n 
CL2 CL3 PIJ sing 500 n n 
CL3 CL4 PIJ sing 501 n n 
CL4 CL5 PIJ sing 502 n n 
CL5 CL6 PIJ sing 503 n n 
CL6 CL7 PIJ sing 504 n n 
CL7 CL8 PIJ sing 505 n n 
CL8 CL9 PIJ sing 506 n n 
CL9 CLA PIJ sing 507 n n 
CLA CLB PIJ sing 508 n n 
CLB CLC PIJ sing 509 n n 
CLC CLD PIJ sing 510 n n 
CLD CLE PIJ sing 511 n n 
CLE CLF PIJ sing 512 n n 
CO9 CR1 PIJ sing 513 n n 
CR1 CR2 PIJ sing 514 n n 
CR2 CR3 PIJ sing 515 n n 
CR3 CR4 PIJ sing 516 n n 
CR4 CR5 PIJ sing 517 n n 
CR5 CR6 PIJ sing 518 n n 
CR6 CR7 PIJ sing 519 n n 
CR7 CR8 PIJ sing 520 n n 
CR8 CR9 PIJ sing 521 n n 
CR9 CRA PIJ sing 522 n n 
CRA CRB PIJ sing 523 n n 
CRB CRC PIJ sing 524 n n 
CRC CRD PIJ sing 525 n n 
CRD CRE PIJ sing 526 n n 
CRE CRF PIJ sing 527 n n 
CRF CRG PIJ sing 528 n n 
O13 HO13 PIJ sing 529 n n 
C21 H21 PIJ sing 530 n n 
C21 H21A PIJ sing 531 n n 
C24 H24 PIJ sing 532 n n 
C25 H25 PIJ sing 533 n n 
C25 H25A PIJ sing 534 n n 
CI1 HI1 PIJ sing 535 n n 
CI2 HI2 PIJ sing 536 n n 
OI2 HOI2 PIJ sing 537 n n 
CI3 HI3 PIJ sing 538 n n 
OI3 HOI3 PIJ sing 539 n n 
CI4 HI4 PIJ sing 540 n n 
OI4 HOI4 PIJ sing 541 n n 
CI5 HI5 PIJ sing 542 n n 
OI5 HOI5 PIJ sing 543 n n 
CI6 HI6 PIJ sing 544 n n 
OI6 HOI6 PIJ sing 545 n n 
CL1 HL1 PIJ sing 546 n n 
CL1 HL1A PIJ sing 547 n n 
CL2 HL2 PIJ sing 548 n n 
CL2 HL2A PIJ sing 549 n n 
CL3 HL3 PIJ sing 550 n n 
CL3 HL3A PIJ sing 551 n n 
CL4 HL4 PIJ sing 552 n n 
CL4 HL4A PIJ sing 553 n n 
CL5 HL5 PIJ sing 554 n n 
CL5 HL5A PIJ sing 555 n n 
CL6 HL6 PIJ sing 556 n n 
CL6 HL6A PIJ sing 557 n n 
CL7 HL7 PIJ sing 558 n n 
CL7 HL7A PIJ sing 559 n n 
CL8 HL8 PIJ sing 560 n n 
CL8 HL8A PIJ sing 561 n n 
CL9 HL9 PIJ sing 562 n n 
CL9 HL9A PIJ sing 563 n n 
CLA HLA PIJ sing 564 n n 
CLA HLAA PIJ sing 565 n n 
CLB HLB PIJ sing 566 n n 
CLB HLBA PIJ sing 567 n n 
CLC HLC PIJ sing 568 n n 
CLC HLCA PIJ sing 569 n n 
CLD HLD PIJ sing 570 n n 
CLD HLDA PIJ sing 571 n n 
CLE HLE PIJ sing 572 n n 
CLE HLEA PIJ sing 573 n n 
CLF HLF PIJ sing 574 n n 
CLF HLFA PIJ sing 575 n n 
CLF HLFB PIJ sing 576 n n 
CR1 HR1 PIJ sing 577 n n 
CR1 HR1A PIJ sing 578 n n 
CR2 HR2 PIJ sing 579 n n 
CR2 HR2A PIJ sing 580 n n 
CR3 HR3 PIJ sing 581 n n 
CR3 HR3A PIJ sing 582 n n 
CR4 HR4 PIJ sing 583 n n 
CR4 HR4A PIJ sing 584 n n 
CR5 HR5 PIJ sing 585 n n 
CR5 HR5A PIJ sing 586 n n 
CR6 HR6 PIJ sing 587 n n 
CR6 HR6A PIJ sing 588 n n 
CR7 HR7 PIJ sing 589 n n 
CR7 HR7A PIJ sing 590 n n 
CR8 HR8 PIJ sing 591 n n 
CR8 HR8A PIJ sing 592 n n 
CR9 HR9 PIJ sing 593 n n 
CR9 HR9A PIJ sing 594 n n 
CRA HRA PIJ sing 595 n n 
CRA HRAA PIJ sing 596 n n 
CRB HRB PIJ sing 597 n n 
CRB HRBA PIJ sing 598 n n 
CRC HRC PIJ sing 599 n n 
CRC HRCA PIJ sing 600 n n 
CRD HRD PIJ sing 601 n n 
CRD HRDA PIJ sing 602 n n 
CRE HRE PIJ sing 603 n n 
CRE HREA PIJ sing 604 n n 
CRF HRF PIJ sing 605 n n 
CRF HRFA PIJ sing 606 n n 
CRG HRG PIJ sing 607 n n 
CRG HRGA PIJ sing 608 n n 
CRG HRGB PIJ sing 609 n n 
#
_atom_sites.entry_id                     8QTN 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 3PE A 1 401 402 3PE 3PE . 
F 5 7PO A 1 402 403 7PO 26D . 
G 4 3PE B 1 401 401 3PE 3PE . 
H 4 3PE B 1 402 403 3PE 3PE . 
I 5 7PO B 1 403 404 7PO 26D . 
J 6 PIJ C 1 201 201 PIJ PIJ . 
K 7 NH4 C 1 202 202 NH4 NH4 . 
L 4 3PE D 1 401 401 3PE 3PE . 
M 6 PIJ D 1 402 402 PIJ PIJ . 
N 7 NH4 D 1 403 403 NH4 NH4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 PIJ . . . M 6 128.743 140.224 164.702 1 22 ? P1 PIJ 402 D 1 
HETATM 2 O O11 PIJ . . . M 6 128.409 141.05 165.923 1 26.52 ? O11 PIJ 402 D 1 
HETATM 3 O O12 PIJ . . . M 6 130.366 140.322 164.39 1 27.97 ? O12 PIJ 402 D 1 
HETATM 4 O O13 PIJ . . . M 6 127.974 140.742 163.506 1 16.75 ? O13 PIJ 402 D 1 
HETATM 5 C C21 PIJ . . . M 6 130.81 141.364 163.552 1 26.42 ? C21 PIJ 402 D 1 
HETATM 6 C C24 PIJ . . . M 6 131.873 140.779 162.589 1 29.23 ? C24 PIJ 402 D 1 
HETATM 7 C C25 PIJ . . . M 6 133.261 140.654 163.241 1 30.58 ? C25 PIJ 402 D 1 
HETATM 8 O O26 PIJ . . . M 6 133.786 141.954 163.356 1 30.81 ? O26 PIJ 402 D 1 
HETATM 9 O O29 PIJ . . . M 6 132.014 141.644 161.466 1 27.45 ? O29 PIJ 402 D 1 
HETATM 10 O OC6 PIJ . . . M 6 135.788 141.173 162.682 1 35.35 ? OC6 PIJ 402 D 1 
HETATM 11 O OC9 PIJ . . . M 6 131.319 140.071 160.02 1 41.35 ? OC9 PIJ 402 D 1 
HETATM 12 C CI1 PIJ . . . M 6 127.021 138.311 164.498 1 28.44 ? CI1 PIJ 402 D 1 
HETATM 13 O OI1 PIJ . . . M 6 128.292 138.666 164.952 1 35.27 ? OI1 PIJ 402 D 1 
HETATM 14 C CI2 PIJ . . . M 6 126.037 138.24 165.669 1 26.94 ? CI2 PIJ 402 D 1 
HETATM 15 O OI2 PIJ . . . M 6 126.737 138.04 166.864 1 31.52 ? OI2 PIJ 402 D 1 
HETATM 16 C CI3 PIJ . . . M 6 124.918 137.209 165.551 1 22.22 ? CI3 PIJ 402 D 1 
HETATM 17 O OI3 PIJ . . . M 6 125.228 136.098 166.342 1 31.34 ? OI3 PIJ 402 D 1 
HETATM 18 C CI4 PIJ . . . M 6 124.721 136.74 164.12 1 27.08 ? CI4 PIJ 402 D 1 
HETATM 19 O OI4 PIJ . . . M 6 123.71 135.774 164.101 1 35.26 ? OI4 PIJ 402 D 1 
HETATM 20 C CI5 PIJ . . . M 6 126.008 136.101 163.634 1 29.32 ? CI5 PIJ 402 D 1 
HETATM 21 O OI5 PIJ . . . M 6 125.786 135.521 162.379 1 38.91 ? OI5 PIJ 402 D 1 
HETATM 22 C CI6 PIJ . . . M 6 127.134 137.124 163.539 1 25.67 ? CI6 PIJ 402 D 1 
HETATM 23 O OI6 PIJ . . . M 6 127.198 137.623 162.236 1 27.95 ? OI6 PIJ 402 D 1 
HETATM 24 C CL1 PIJ . . . M 6 135.529 143.49 162.314 1 34.87 ? CL1 PIJ 402 D 1 
HETATM 25 C CL2 PIJ . . . M 6 137.039 143.684 162.476 1 28.88 ? CL2 PIJ 402 D 1 
HETATM 26 C CL3 PIJ . . . M 6 137.437 143.981 163.931 1 33.85 ? CL3 PIJ 402 D 1 
HETATM 27 C CL4 PIJ . . . M 6 138.949 144.12 164.08 1 34.06 ? CL4 PIJ 402 D 1 
HETATM 28 C CL5 PIJ . . . M 6 139.37 144.715 165.418 1 31.21 ? CL5 PIJ 402 D 1 
HETATM 29 C CL6 PIJ . . . M 6 140.691 145.451 165.306 1 33.9 ? CL6 PIJ 402 D 1 
HETATM 30 C CL7 PIJ . . . M 6 140.934 146.419 166.457 1 29.68 ? CL7 PIJ 402 D 1 
HETATM 31 C CL8 PIJ . . . M 6 141.229 147.831 165.97 1 32.79 ? CL8 PIJ 402 D 1 
HETATM 32 C CL9 PIJ . . . M 6 141.754 147.861 164.52 1 33.43 ? CL9 PIJ 402 D 1 
HETATM 33 C CLA PIJ . . . M 6 142.169 149.287 164.072 1 28.98 ? CLA PIJ 402 D 1 
HETATM 34 C CLB PIJ . . . M 6 143.381 149.269 163.117 1 29.46 ? CLB PIJ 402 D 1 
HETATM 35 C CLC PIJ . . . M 6 143.249 150.314 161.994 1 34.78 ? CLC PIJ 402 D 1 
HETATM 36 C CLD PIJ . . . M 6 142.902 149.667 160.645 1 30.96 ? CLD PIJ 402 D 1 
HETATM 37 C CLE PIJ . . . M 6 142.707 150.698 159.539 1 33.58 ? CLE PIJ 402 D 1 
HETATM 38 C CLF PIJ . . . M 6 141.476 150.421 158.7 1 30.22 ? CLF PIJ 402 D 1 
HETATM 39 C CO6 PIJ . . . M 6 135.069 142.106 162.79 1 35.51 ? CO6 PIJ 402 D 1 
HETATM 40 C CO9 PIJ . . . M 6 132.073 140.954 160.238 1 36 ? CO9 PIJ 402 D 1 
HETATM 41 C CR1 PIJ . . . M 6 133.139 141.335 159.179 1 33.64 ? CR1 PIJ 402 D 1 
HETATM 42 C CR2 PIJ . . . M 6 134.448 140.54 159.363 1 28.4 ? CR2 PIJ 402 D 1 
HETATM 43 C CR3 PIJ . . . M 6 135.569 141.009 158.411 1 28.18 ? CR3 PIJ 402 D 1 
HETATM 44 C CR4 PIJ . . . M 6 136.168 142.373 158.81 1 31.52 ? CR4 PIJ 402 D 1 
HETATM 45 C CR5 PIJ . . . M 6 137.024 142.978 157.685 1 32.75 ? CR5 PIJ 402 D 1 
HETATM 46 C CR6 PIJ . . . M 6 136.675 144.447 157.426 1 35.44 ? CR6 PIJ 402 D 1 
HETATM 47 C CR7 PIJ . . . M 6 136.491 144.76 155.939 1 34.95 ? CR7 PIJ 402 D 1 
HETATM 48 C CR8 PIJ . . . M 6 136.393 146.267 155.677 1 29.93 ? CR8 PIJ 402 D 1 
HETATM 49 C CR9 PIJ . . . M 6 134.939 146.719 155.481 1 33.15 ? CR9 PIJ 402 D 1 
HETATM 50 C CRA PIJ . . . M 6 134.783 147.724 154.328 1 35.89 ? CRA PIJ 402 D 1 
HETATM 51 C CRB PIJ . . . M 6 133.937 148.946 154.721 1 32.46 ? CRB PIJ 402 D 1 
HETATM 52 C CRC PIJ . . . M 6 133.942 149.194 156.234 1 30.55 ? CRC PIJ 402 D 1 
HETATM 53 C CRD PIJ . . . M 6 134.961 150.268 156.649 1 25.21 ? CRD PIJ 402 D 1 
HETATM 54 C CRE PIJ . . . M 6 135.804 149.816 157.847 1 31.77 ? CRE PIJ 402 D 1 
HETATM 55 C CRF PIJ . . . M 6 136.938 150.789 158.164 1 30.4 ? CRF PIJ 402 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           55 
#