data_8QTU # _model_server_result.job_id -Ip4533nDCyYODP-08m31g _model_server_result.datetime_utc '2024-12-16 04:05:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qtu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 8QTU # _exptl.entry_id 8QTU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.516 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-dodecylsulfanyl-3-methyl-butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.66 _cell.angle_gamma 90 _cell.entry_id 8QTU _cell.length_a 38.292 _cell.length_b 74.689 _cell.length_c 56.197 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QTU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LYS 6 B LYS 6 1_555 B N NIY 7 B NIY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale2 B NZ LYS 6 B LYS 6 1_555 F C11 WWE . B WWE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B C NIY 7 B NIY 7 1_555 B N GLY 8 B GLY 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A SG CYS 143 A CYS 195 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 A SG CYS 148 A CYS 200 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc3 A SG CYS 169 A CYS 221 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc4 A SG CYS 172 A CYS 224 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? # _chem_comp.formula 'C17 H34 O2 S' _chem_comp.formula_weight 302.516 _chem_comp.id WWE _chem_comp.mon_nstd_flag . _chem_comp.name '3-dodecylsulfanyl-3-methyl-butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C13 WWE sing 486 n n C21 C22 WWE sing 487 n n C21 C20 WWE sing 488 n n C22 C23 WWE sing 489 n n C19 C20 WWE sing 490 n n C19 C18 WWE sing 491 n n C17 C18 WWE sing 492 n n C17 S16 WWE sing 493 n n C13 S16 WWE sing 494 n n C13 C15 WWE sing 495 n n C13 C12 WWE sing 496 n n C23 C24 WWE sing 497 n n C24 C25 WWE sing 498 n n C11 C12 WWE sing 499 n n C11 O29 WWE doub 500 n n C26 C25 WWE sing 501 n n C26 C27 WWE sing 502 n n C27 C28 WWE sing 503 n n C12 H2 WWE sing 504 n n C12 H3 WWE sing 505 n n C21 H4 WWE sing 506 n n C21 H5 WWE sing 507 n n C14 H6 WWE sing 508 n n C14 H7 WWE sing 509 n n C14 H8 WWE sing 510 n n C17 H9 WWE sing 511 n n C17 H10 WWE sing 512 n n C18 H11 WWE sing 513 n n C18 H12 WWE sing 514 n n C19 H13 WWE sing 515 n n C19 H14 WWE sing 516 n n C20 H15 WWE sing 517 n n C20 H16 WWE sing 518 n n C15 H17 WWE sing 519 n n C15 H18 WWE sing 520 n n C15 H19 WWE sing 521 n n C22 H20 WWE sing 522 n n C22 H21 WWE sing 523 n n C23 H22 WWE sing 524 n n C23 H23 WWE sing 525 n n C24 H24 WWE sing 526 n n C24 H25 WWE sing 527 n n C25 H26 WWE sing 528 n n C25 H27 WWE sing 529 n n C26 H28 WWE sing 530 n n C26 H29 WWE sing 531 n n C27 H30 WWE sing 532 n n C27 H31 WWE sing 533 n n C28 H32 WWE sing 534 n n C28 H33 WWE sing 535 n n C28 H34 WWE sing 536 n n C11 O1 WWE sing 537 n n O1 H1 WWE sing 538 n n # _atom_sites.entry_id 8QTU _atom_sites.fract_transf_matrix[1][1] 0.026115 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003512 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 401 3 ZN ZN . D 4 NAD A 1 402 401 NAD NAD . E 5 EDO A 1 403 402 EDO EDO . F 6 WWE B 1 101 1 WWE TN3 . G 7 HOH A 1 501 187 HOH HOH . G 7 HOH A 2 502 196 HOH HOH . G 7 HOH A 3 503 132 HOH HOH . G 7 HOH A 4 504 85 HOH HOH . G 7 HOH A 5 505 38 HOH HOH . G 7 HOH A 6 506 74 HOH HOH . G 7 HOH A 7 507 37 HOH HOH . G 7 HOH A 8 508 197 HOH HOH . G 7 HOH A 9 509 192 HOH HOH . G 7 HOH A 10 510 8 HOH HOH . G 7 HOH A 11 511 191 HOH HOH . G 7 HOH A 12 512 40 HOH HOH . G 7 HOH A 13 513 36 HOH HOH . G 7 HOH A 14 514 83 HOH HOH . G 7 HOH A 15 515 66 HOH HOH . G 7 HOH A 16 516 135 HOH HOH . G 7 HOH A 17 517 55 HOH HOH . G 7 HOH A 18 518 54 HOH HOH . G 7 HOH A 19 519 163 HOH HOH . G 7 HOH A 20 520 41 HOH HOH . G 7 HOH A 21 521 82 HOH HOH . G 7 HOH A 22 522 113 HOH HOH . G 7 HOH A 23 523 86 HOH HOH . G 7 HOH A 24 524 53 HOH HOH . G 7 HOH A 25 525 63 HOH HOH . G 7 HOH A 26 526 157 HOH HOH . G 7 HOH A 27 527 115 HOH HOH . G 7 HOH A 28 528 199 HOH HOH . G 7 HOH A 29 529 125 HOH HOH . G 7 HOH A 30 530 59 HOH HOH . G 7 HOH A 31 531 16 HOH HOH . G 7 HOH A 32 532 185 HOH HOH . G 7 HOH A 33 533 65 HOH HOH . G 7 HOH A 34 534 103 HOH HOH . G 7 HOH A 35 535 32 HOH HOH . G 7 HOH A 36 536 13 HOH HOH . G 7 HOH A 37 537 78 HOH HOH . G 7 HOH A 38 538 49 HOH HOH . G 7 HOH A 39 539 12 HOH HOH . G 7 HOH A 40 540 198 HOH HOH . G 7 HOH A 41 541 68 HOH HOH . G 7 HOH A 42 542 5 HOH HOH . G 7 HOH A 43 543 17 HOH HOH . G 7 HOH A 44 544 171 HOH HOH . G 7 HOH A 45 545 31 HOH HOH . G 7 HOH A 46 546 47 HOH HOH . G 7 HOH A 47 547 158 HOH HOH . G 7 HOH A 48 548 7 HOH HOH . G 7 HOH A 49 549 11 HOH HOH . G 7 HOH A 50 550 6 HOH HOH . G 7 HOH A 51 551 9 HOH HOH . G 7 HOH A 52 552 151 HOH HOH . G 7 HOH A 53 553 3 HOH HOH . G 7 HOH A 54 554 136 HOH HOH . G 7 HOH A 55 555 64 HOH HOH . G 7 HOH A 56 556 72 HOH HOH . G 7 HOH A 57 557 42 HOH HOH . G 7 HOH A 58 558 1 HOH HOH . G 7 HOH A 59 559 169 HOH HOH . G 7 HOH A 60 560 134 HOH HOH . G 7 HOH A 61 561 19 HOH HOH . G 7 HOH A 62 562 120 HOH HOH . G 7 HOH A 63 563 155 HOH HOH . G 7 HOH A 64 564 188 HOH HOH . G 7 HOH A 65 565 23 HOH HOH . G 7 HOH A 66 566 20 HOH HOH . G 7 HOH A 67 567 172 HOH HOH . G 7 HOH A 68 568 98 HOH HOH . G 7 HOH A 69 569 24 HOH HOH . G 7 HOH A 70 570 93 HOH HOH . G 7 HOH A 71 571 34 HOH HOH . G 7 HOH A 72 572 15 HOH HOH . G 7 HOH A 73 573 10 HOH HOH . G 7 HOH A 74 574 14 HOH HOH . G 7 HOH A 75 575 46 HOH HOH . G 7 HOH A 76 576 51 HOH HOH . G 7 HOH A 77 577 27 HOH HOH . G 7 HOH A 78 578 101 HOH HOH . G 7 HOH A 79 579 45 HOH HOH . G 7 HOH A 80 580 39 HOH HOH . G 7 HOH A 81 581 70 HOH HOH . G 7 HOH A 82 582 76 HOH HOH . G 7 HOH A 83 583 21 HOH HOH . G 7 HOH A 84 584 131 HOH HOH . G 7 HOH A 85 585 200 HOH HOH . G 7 HOH A 86 586 146 HOH HOH . G 7 HOH A 87 587 178 HOH HOH . G 7 HOH A 88 588 89 HOH HOH . G 7 HOH A 89 589 22 HOH HOH . G 7 HOH A 90 590 69 HOH HOH . G 7 HOH A 91 591 30 HOH HOH . G 7 HOH A 92 592 50 HOH HOH . G 7 HOH A 93 593 77 HOH HOH . G 7 HOH A 94 594 133 HOH HOH . G 7 HOH A 95 595 87 HOH HOH . G 7 HOH A 96 596 25 HOH HOH . G 7 HOH A 97 597 99 HOH HOH . G 7 HOH A 98 598 118 HOH HOH . G 7 HOH A 99 599 18 HOH HOH . G 7 HOH A 100 600 33 HOH HOH . G 7 HOH A 101 601 79 HOH HOH . G 7 HOH A 102 602 92 HOH HOH . G 7 HOH A 103 603 108 HOH HOH . G 7 HOH A 104 604 26 HOH HOH . G 7 HOH A 105 605 116 HOH HOH . G 7 HOH A 106 606 43 HOH HOH . G 7 HOH A 107 607 100 HOH HOH . G 7 HOH A 108 608 159 HOH HOH . G 7 HOH A 109 609 110 HOH HOH . G 7 HOH A 110 610 112 HOH HOH . G 7 HOH A 111 611 56 HOH HOH . G 7 HOH A 112 612 62 HOH HOH . G 7 HOH A 113 613 122 HOH HOH . G 7 HOH A 114 614 173 HOH HOH . G 7 HOH A 115 615 52 HOH HOH . G 7 HOH A 116 616 71 HOH HOH . G 7 HOH A 117 617 57 HOH HOH . G 7 HOH A 118 618 96 HOH HOH . G 7 HOH A 119 619 156 HOH HOH . G 7 HOH A 120 620 141 HOH HOH . G 7 HOH A 121 621 58 HOH HOH . G 7 HOH A 122 622 73 HOH HOH . G 7 HOH A 123 623 60 HOH HOH . G 7 HOH A 124 624 48 HOH HOH . G 7 HOH A 125 625 190 HOH HOH . G 7 HOH A 126 626 126 HOH HOH . G 7 HOH A 127 627 94 HOH HOH . G 7 HOH A 128 628 44 HOH HOH . G 7 HOH A 129 629 138 HOH HOH . G 7 HOH A 130 630 91 HOH HOH . G 7 HOH A 131 631 168 HOH HOH . G 7 HOH A 132 632 176 HOH HOH . G 7 HOH A 133 633 114 HOH HOH . G 7 HOH A 134 634 84 HOH HOH . G 7 HOH A 135 635 88 HOH HOH . G 7 HOH A 136 636 97 HOH HOH . G 7 HOH A 137 637 35 HOH HOH . G 7 HOH A 138 638 106 HOH HOH . G 7 HOH A 139 639 117 HOH HOH . G 7 HOH A 140 640 189 HOH HOH . G 7 HOH A 141 641 186 HOH HOH . G 7 HOH A 142 642 144 HOH HOH . G 7 HOH A 143 643 183 HOH HOH . G 7 HOH A 144 644 105 HOH HOH . G 7 HOH A 145 645 90 HOH HOH . G 7 HOH A 146 646 165 HOH HOH . G 7 HOH A 147 647 147 HOH HOH . G 7 HOH A 148 648 166 HOH HOH . G 7 HOH A 149 649 75 HOH HOH . G 7 HOH A 150 650 143 HOH HOH . G 7 HOH A 151 651 175 HOH HOH . G 7 HOH A 152 652 150 HOH HOH . G 7 HOH A 153 653 67 HOH HOH . G 7 HOH A 154 654 154 HOH HOH . G 7 HOH A 155 655 179 HOH HOH . G 7 HOH A 156 656 80 HOH HOH . G 7 HOH A 157 657 160 HOH HOH . G 7 HOH A 158 658 177 HOH HOH . G 7 HOH A 159 659 164 HOH HOH . G 7 HOH A 160 660 109 HOH HOH . G 7 HOH A 161 661 202 HOH HOH . G 7 HOH A 162 662 121 HOH HOH . G 7 HOH A 163 663 104 HOH HOH . G 7 HOH A 164 664 148 HOH HOH . G 7 HOH A 165 665 194 HOH HOH . G 7 HOH A 166 666 180 HOH HOH . G 7 HOH A 167 667 170 HOH HOH . G 7 HOH A 168 668 182 HOH HOH . G 7 HOH A 169 669 161 HOH HOH . G 7 HOH A 170 670 174 HOH HOH . G 7 HOH A 171 671 162 HOH HOH . G 7 HOH A 172 672 152 HOH HOH . G 7 HOH A 173 673 181 HOH HOH . G 7 HOH A 174 674 184 HOH HOH . G 7 HOH A 175 675 201 HOH HOH . G 7 HOH A 176 676 167 HOH HOH . H 7 HOH B 1 201 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 WWE . . . F 6 11.477 10.776 16.52 1 38.2 ? C11 WWE 101 B 1 HETATM 2 C C12 WWE . . . F 6 11.558 12.23 16.936 1 34.65 ? C12 WWE 101 B 1 HETATM 3 C C13 WWE . . . F 6 12.747 12.562 17.873 1 41.86 ? C13 WWE 101 B 1 HETATM 4 C C21 WWE . . . F 6 15.553 18.987 17.124 1 54.09 ? C21 WWE 101 B 1 HETATM 5 C C14 WWE . . . F 6 14.032 11.87 17.424 1 40.19 ? C14 WWE 101 B 1 HETATM 6 C C17 WWE . . . F 6 14.634 14.407 16.786 1 42.31 ? C17 WWE 101 B 1 HETATM 7 C C18 WWE . . . F 6 15.245 15.795 16.63 1 45 ? C18 WWE 101 B 1 HETATM 8 C C19 WWE . . . F 6 15.293 16.564 17.953 1 51.8 ? C19 WWE 101 B 1 HETATM 9 C C20 WWE . . . F 6 16.145 17.826 17.918 1 55.6 ? C20 WWE 101 B 1 HETATM 10 C C15 WWE . . . F 6 12.422 12.212 19.324 1 40.12 ? C15 WWE 101 B 1 HETATM 11 C C22 WWE . . . F 6 16.462 20.208 17.103 1 53.89 ? C22 WWE 101 B 1 HETATM 12 C C23 WWE . . . F 6 15.72 21.523 17.204 1 49.97 ? C23 WWE 101 B 1 HETATM 13 C C24 WWE . . . F 6 14.662 21.693 16.139 1 46 ? C24 WWE 101 B 1 HETATM 14 C C25 WWE . . . F 6 13.765 22.893 16.37 1 43.52 ? C25 WWE 101 B 1 HETATM 15 C C26 WWE . . . F 6 12.528 22.898 15.488 1 39.42 ? C26 WWE 101 B 1 HETATM 16 C C27 WWE . . . F 6 11.553 24.018 15.798 1 39.94 ? C27 WWE 101 B 1 HETATM 17 C C28 WWE . . . F 6 10.361 24.019 14.851 1 37.78 ? C28 WWE 101 B 1 HETATM 18 O O29 WWE . . . F 6 12.001 10.37 15.489 1 42.69 ? O29 WWE 101 B 1 HETATM 19 S S16 WWE . . . F 6 13.079 14.342 17.723 1 50.67 ? S16 WWE 101 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #