data_8QTW # _model_server_result.job_id gplxmbjmlnbl-08F3nuvSQ _model_server_result.datetime_utc '2024-11-05 09:26:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qtw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":606}' # _entry.id 8QTW # _exptl.entry_id 8QTW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.051 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLYCOLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QTW _cell.length_a 154.231 _cell.length_b 154.231 _cell.length_c 127.979 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QTW _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 1 FUC NAG C1 O1 . O6 HO6 . sing 5 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 4 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 624 NAG 2 n B FUC 2 B 2 FUC A 625 FUC 3 n C NAG 1 C 1 NAG A 626 NAG 3 n C NAG 2 C 2 NAG A 627 NAG 3 n C BMA 3 C 3 BMA A 628 BMA 3 n C FUC 4 C 4 FUC A 629 FUC 4 n D NAG 1 D 1 NAG A 630 NAG 4 n D NAG 2 D 2 NAG A 631 NAG 4 n D FUC 3 D 3 FUC A 632 FUC 4 n E NAG 1 E 1 NAG A 634 NAG 4 n E NAG 2 E 2 NAG A 635 NAG 4 n E FUC 3 E 3 FUC A 636 FUC 2 n F NAG 1 F 1 NAG A 637 NAG 2 n F FUC 2 F 2 FUC A 638 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 252 A CYS 252 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 106 A ASN 106 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale3 A OG SER 198 A SER 198 1_555 O C24 WXR . A WXR 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale4 A ND2 ASN 241 A ASN 241 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale5 A ND2 ASN 256 A ASN 256 1_555 G C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale6 A ND2 ASN 341 A ASN 341 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale7 A ND2 ASN 485 A ASN 485 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale8 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale9 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale10 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale11 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale12 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale13 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale14 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale15 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale16 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C2 H4 O3' _chem_comp.formula_weight 76.051 _chem_comp.id GOA _chem_comp.mon_nstd_flag . _chem_comp.name 'GLYCOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HYDROXYACETIC ACID;HYDROXYETHANOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C CA GOA sing 176 n n C O GOA doub 177 n n C OXT GOA sing 178 n n CA O2 GOA sing 179 n n CA H22 GOA sing 180 n n CA H21 GOA sing 181 n n OXT HXT GOA sing 182 n n O2 H20 GOA sing 183 n n # _atom_sites.entry_id 8QTW _atom_sites.fract_transf_matrix[1][1] 0.006484 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 NAG A 1 601 633 NAG NAG . H 6 GOL A 1 602 639 GOL GOL . I 6 GOL A 1 603 640 GOL GOL . J 7 MES A 1 604 642 MES MES . K 6 GOL A 1 605 643 GOL GOL . L 8 GOA A 1 606 644 GOA GOA . M 6 GOL A 1 607 645 GOL GOL . N 9 SIA A 1 608 646 SIA SIA . O 10 WXR A 1 609 647 WXR XB8 . P 6 GOL A 1 610 648 GOL GOL . Q 11 SO4 A 1 611 1 SO4 SO4 . R 11 SO4 A 1 612 2 SO4 SO4 . S 11 SO4 A 1 613 3 SO4 SO4 . T 11 SO4 A 1 614 4 SO4 SO4 . U 12 HOH A 1 701 47 HOH HOH . U 12 HOH A 2 702 104 HOH HOH . U 12 HOH A 3 703 67 HOH HOH . U 12 HOH A 4 704 65 HOH HOH . U 12 HOH A 5 705 122 HOH HOH . U 12 HOH A 6 706 80 HOH HOH . U 12 HOH A 7 707 28 HOH HOH . U 12 HOH A 8 708 48 HOH HOH . U 12 HOH A 9 709 159 HOH HOH . U 12 HOH A 10 710 166 HOH HOH . U 12 HOH A 11 711 52 HOH HOH . U 12 HOH A 12 712 64 HOH HOH . U 12 HOH A 13 713 106 HOH HOH . U 12 HOH A 14 714 81 HOH HOH . U 12 HOH A 15 715 119 HOH HOH . U 12 HOH A 16 716 11 HOH HOH . U 12 HOH A 17 717 100 HOH HOH . U 12 HOH A 18 718 24 HOH HOH . U 12 HOH A 19 719 60 HOH HOH . U 12 HOH A 20 720 9 HOH HOH . U 12 HOH A 21 721 102 HOH HOH . U 12 HOH A 22 722 8 HOH HOH . U 12 HOH A 23 723 31 HOH HOH . U 12 HOH A 24 724 82 HOH HOH . U 12 HOH A 25 725 58 HOH HOH . U 12 HOH A 26 726 2 HOH HOH . U 12 HOH A 27 727 21 HOH HOH . U 12 HOH A 28 728 124 HOH HOH . U 12 HOH A 29 729 112 HOH HOH . U 12 HOH A 30 730 117 HOH HOH . U 12 HOH A 31 731 108 HOH HOH . U 12 HOH A 32 732 33 HOH HOH . U 12 HOH A 33 733 59 HOH HOH . U 12 HOH A 34 734 38 HOH HOH . U 12 HOH A 35 735 7 HOH HOH . U 12 HOH A 36 736 13 HOH HOH . U 12 HOH A 37 737 111 HOH HOH . U 12 HOH A 38 738 15 HOH HOH . U 12 HOH A 39 739 78 HOH HOH . U 12 HOH A 40 740 37 HOH HOH . U 12 HOH A 41 741 22 HOH HOH . U 12 HOH A 42 742 10 HOH HOH . U 12 HOH A 43 743 44 HOH HOH . U 12 HOH A 44 744 95 HOH HOH . U 12 HOH A 45 745 68 HOH HOH . U 12 HOH A 46 746 57 HOH HOH . U 12 HOH A 47 747 54 HOH HOH . U 12 HOH A 48 748 140 HOH HOH . U 12 HOH A 49 749 16 HOH HOH . U 12 HOH A 50 750 30 HOH HOH . U 12 HOH A 51 751 70 HOH HOH . U 12 HOH A 52 752 6 HOH HOH . U 12 HOH A 53 753 12 HOH HOH . U 12 HOH A 54 754 131 HOH HOH . U 12 HOH A 55 755 26 HOH HOH . U 12 HOH A 56 756 51 HOH HOH . U 12 HOH A 57 757 23 HOH HOH . U 12 HOH A 58 758 127 HOH HOH . U 12 HOH A 59 759 18 HOH HOH . U 12 HOH A 60 760 163 HOH HOH . U 12 HOH A 61 761 85 HOH HOH . U 12 HOH A 62 762 32 HOH HOH . U 12 HOH A 63 763 25 HOH HOH . U 12 HOH A 64 764 45 HOH HOH . U 12 HOH A 65 765 55 HOH HOH . U 12 HOH A 66 766 134 HOH HOH . U 12 HOH A 67 767 62 HOH HOH . U 12 HOH A 68 768 63 HOH HOH . U 12 HOH A 69 769 97 HOH HOH . U 12 HOH A 70 770 71 HOH HOH . U 12 HOH A 71 771 120 HOH HOH . U 12 HOH A 72 772 69 HOH HOH . U 12 HOH A 73 773 133 HOH HOH . U 12 HOH A 74 774 156 HOH HOH . U 12 HOH A 75 775 1 HOH HOH . U 12 HOH A 76 776 14 HOH HOH . U 12 HOH A 77 777 19 HOH HOH . U 12 HOH A 78 778 40 HOH HOH . U 12 HOH A 79 779 94 HOH HOH . U 12 HOH A 80 780 129 HOH HOH . U 12 HOH A 81 781 96 HOH HOH . U 12 HOH A 82 782 107 HOH HOH . U 12 HOH A 83 783 153 HOH HOH . U 12 HOH A 84 784 5 HOH HOH . U 12 HOH A 85 785 86 HOH HOH . U 12 HOH A 86 786 36 HOH HOH . U 12 HOH A 87 787 56 HOH HOH . U 12 HOH A 88 788 27 HOH HOH . U 12 HOH A 89 789 34 HOH HOH . U 12 HOH A 90 790 91 HOH HOH . U 12 HOH A 91 791 50 HOH HOH . U 12 HOH A 92 792 164 HOH HOH . U 12 HOH A 93 793 103 HOH HOH . U 12 HOH A 94 794 4 HOH HOH . U 12 HOH A 95 795 3 HOH HOH . U 12 HOH A 96 796 39 HOH HOH . U 12 HOH A 97 797 128 HOH HOH . U 12 HOH A 98 798 77 HOH HOH . U 12 HOH A 99 799 152 HOH HOH . U 12 HOH A 100 800 89 HOH HOH . U 12 HOH A 101 801 29 HOH HOH . U 12 HOH A 102 802 66 HOH HOH . U 12 HOH A 103 803 49 HOH HOH . U 12 HOH A 104 804 87 HOH HOH . U 12 HOH A 105 805 73 HOH HOH . U 12 HOH A 106 806 46 HOH HOH . U 12 HOH A 107 807 88 HOH HOH . U 12 HOH A 108 808 154 HOH HOH . U 12 HOH A 109 809 132 HOH HOH . U 12 HOH A 110 810 53 HOH HOH . U 12 HOH A 111 811 157 HOH HOH . U 12 HOH A 112 812 158 HOH HOH . U 12 HOH A 113 813 130 HOH HOH . U 12 HOH A 114 814 155 HOH HOH . U 12 HOH A 115 815 35 HOH HOH . U 12 HOH A 116 816 84 HOH HOH . U 12 HOH A 117 817 139 HOH HOH . U 12 HOH A 118 818 101 HOH HOH . U 12 HOH A 119 819 110 HOH HOH . U 12 HOH A 120 820 144 HOH HOH . U 12 HOH A 121 821 76 HOH HOH . U 12 HOH A 122 822 61 HOH HOH . U 12 HOH A 123 823 160 HOH HOH . U 12 HOH A 124 824 145 HOH HOH . U 12 HOH A 125 825 75 HOH HOH . U 12 HOH A 126 826 137 HOH HOH . U 12 HOH A 127 827 143 HOH HOH . U 12 HOH A 128 828 41 HOH HOH . U 12 HOH A 129 829 43 HOH HOH . U 12 HOH A 130 830 17 HOH HOH . U 12 HOH A 131 831 116 HOH HOH . U 12 HOH A 132 832 74 HOH HOH . U 12 HOH A 133 833 150 HOH HOH . U 12 HOH A 134 834 115 HOH HOH . U 12 HOH A 135 835 99 HOH HOH . U 12 HOH A 136 836 135 HOH HOH . U 12 HOH A 137 837 123 HOH HOH . U 12 HOH A 138 838 113 HOH HOH . U 12 HOH A 139 839 162 HOH HOH . U 12 HOH A 140 840 118 HOH HOH . U 12 HOH A 141 841 93 HOH HOH . U 12 HOH A 142 842 142 HOH HOH . U 12 HOH A 143 843 92 HOH HOH . U 12 HOH A 144 844 42 HOH HOH . U 12 HOH A 145 845 105 HOH HOH . U 12 HOH A 146 846 20 HOH HOH . U 12 HOH A 147 847 72 HOH HOH . U 12 HOH A 148 848 136 HOH HOH . U 12 HOH A 149 849 98 HOH HOH . U 12 HOH A 150 850 121 HOH HOH . U 12 HOH A 151 851 125 HOH HOH . U 12 HOH A 152 852 149 HOH HOH . U 12 HOH A 153 853 109 HOH HOH . U 12 HOH A 154 854 146 HOH HOH . U 12 HOH A 155 855 147 HOH HOH . U 12 HOH A 156 856 126 HOH HOH . U 12 HOH A 157 857 83 HOH HOH . U 12 HOH A 158 858 161 HOH HOH . U 12 HOH A 159 859 148 HOH HOH . U 12 HOH A 160 860 167 HOH HOH . U 12 HOH A 161 861 114 HOH HOH . U 12 HOH A 162 862 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C GOA . . . L 8 37.231 -21.1 39.345 1 76.26 ? C GOA 606 A 1 HETATM 2 C CA GOA . . . L 8 36.85 -20.728 40.795 1 67.13 ? CA GOA 606 A 1 HETATM 3 O O GOA . . . L 8 38.364 -21.606 39.114 1 66.23 ? O GOA 606 A 1 HETATM 4 O OXT GOA . . . L 8 36.304 -20.823 38.531 1 71.63 ? OXT GOA 606 A 1 HETATM 5 O O2 GOA . . . L 8 36.804 -19.318 40.973 1 48.89 ? O2 GOA 606 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #