data_8QU7 # _model_server_result.job_id Jfd0frgblnz8yUXF3DEqmQ _model_server_result.datetime_utc '2024-10-11 05:19:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qu7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 8QU7 # _exptl.entry_id 8QU7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.18 _cell.angle_gamma 90 _cell.entry_id 8QU7 _cell.length_a 71.651 _cell.length_b 38.462 _cell.length_c 227.355 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QU7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y (x,y,-x+z)' _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 73 E CYS 149 1_555 A SG CYS 226 E CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 141 E CYS 217 1_555 A SG CYS 171 E CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 244 E CYS 320 1_555 A SG CYS 342 E CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 261 E CYS 337 1_555 A SG CYS 333 E CYS 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 B SG CYS 22 A CYS 22 1_555 B SG CYS 76 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 31 A CYS 31 1_555 B SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 270 n n C1 H11 MPD sing 271 n n C1 H12 MPD sing 272 n n C1 H13 MPD sing 273 n n C2 O2 MPD sing 274 n n C2 CM MPD sing 275 n n C2 C3 MPD sing 276 n n O2 HO2 MPD sing 277 n n CM HM1 MPD sing 278 n n CM HM2 MPD sing 279 n n CM HM3 MPD sing 280 n n C3 C4 MPD sing 281 n n C3 H31 MPD sing 282 n n C3 H32 MPD sing 283 n n C4 O4 MPD sing 284 n n C4 C5 MPD sing 285 n n C4 H4 MPD sing 286 n n O4 HO4 MPD sing 287 n n C5 H51 MPD sing 288 n n C5 H52 MPD sing 289 n n C5 H53 MPD sing 290 n n # _atom_sites.entry_id 8QU7 _atom_sites.fract_transf_matrix[1][1] 0.013957 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000044 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004398 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MPD E 1 501 503 MPD MPD . D 4 EPE E 1 502 504 EPE EPE . E 5 NA E 1 503 2 NA NA . F 6 HOH E 1 601 3 HOH HOH . F 6 HOH E 2 602 2 HOH HOH . F 6 HOH E 3 603 32 HOH HOH . F 6 HOH E 4 604 64 HOH HOH . F 6 HOH E 5 605 46 HOH HOH . F 6 HOH E 6 606 19 HOH HOH . F 6 HOH E 7 607 62 HOH HOH . F 6 HOH E 8 608 18 HOH HOH . F 6 HOH E 9 609 84 HOH HOH . F 6 HOH E 10 610 66 HOH HOH . F 6 HOH E 11 611 36 HOH HOH . F 6 HOH E 12 612 15 HOH HOH . F 6 HOH E 13 613 24 HOH HOH . F 6 HOH E 14 614 25 HOH HOH . F 6 HOH E 15 615 48 HOH HOH . F 6 HOH E 16 616 28 HOH HOH . F 6 HOH E 17 617 10 HOH HOH . F 6 HOH E 18 618 12 HOH HOH . F 6 HOH E 19 619 14 HOH HOH . F 6 HOH E 20 620 77 HOH HOH . F 6 HOH E 21 621 9 HOH HOH . F 6 HOH E 22 622 5 HOH HOH . F 6 HOH E 23 623 16 HOH HOH . F 6 HOH E 24 624 13 HOH HOH . F 6 HOH E 25 625 63 HOH HOH . F 6 HOH E 26 626 31 HOH HOH . F 6 HOH E 27 627 23 HOH HOH . F 6 HOH E 28 628 21 HOH HOH . F 6 HOH E 29 629 17 HOH HOH . F 6 HOH E 30 630 33 HOH HOH . F 6 HOH E 31 631 6 HOH HOH . F 6 HOH E 32 632 71 HOH HOH . F 6 HOH E 33 633 72 HOH HOH . F 6 HOH E 34 634 8 HOH HOH . F 6 HOH E 35 635 70 HOH HOH . F 6 HOH E 36 636 44 HOH HOH . F 6 HOH E 37 637 42 HOH HOH . F 6 HOH E 38 638 7 HOH HOH . F 6 HOH E 39 639 30 HOH HOH . F 6 HOH E 40 640 59 HOH HOH . F 6 HOH E 41 641 26 HOH HOH . F 6 HOH E 42 642 4 HOH HOH . F 6 HOH E 43 643 35 HOH HOH . F 6 HOH E 44 644 60 HOH HOH . F 6 HOH E 45 645 49 HOH HOH . F 6 HOH E 46 646 40 HOH HOH . F 6 HOH E 47 647 38 HOH HOH . F 6 HOH E 48 648 87 HOH HOH . F 6 HOH E 49 649 73 HOH HOH . F 6 HOH E 50 650 45 HOH HOH . F 6 HOH E 51 651 27 HOH HOH . F 6 HOH E 52 652 34 HOH HOH . F 6 HOH E 53 653 57 HOH HOH . F 6 HOH E 54 654 47 HOH HOH . F 6 HOH E 55 655 53 HOH HOH . F 6 HOH E 56 656 58 HOH HOH . F 6 HOH E 57 657 43 HOH HOH . F 6 HOH E 58 658 41 HOH HOH . F 6 HOH E 59 659 75 HOH HOH . F 6 HOH E 60 660 79 HOH HOH . F 6 HOH E 61 661 81 HOH HOH . F 6 HOH E 62 662 37 HOH HOH . F 6 HOH E 63 663 76 HOH HOH . F 6 HOH E 64 664 74 HOH HOH . F 6 HOH E 65 665 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 -59.058 -14.801 -68.898 1 47.83 ? C1 MPD 501 E 1 HETATM 2 C C2 MPD . . . C 3 -59.128 -14.312 -67.456 1 45.9 ? C2 MPD 501 E 1 HETATM 3 O O2 MPD . . . C 3 -59.265 -15.458 -66.582 1 47.21 ? O2 MPD 501 E 1 HETATM 4 C CM MPD . . . C 3 -60.342 -13.406 -67.277 1 48.26 ? CM MPD 501 E 1 HETATM 5 C C3 MPD . . . C 3 -57.841 -13.567 -67.117 1 46.91 ? C3 MPD 501 E 1 HETATM 6 C C4 MPD . . . C 3 -57.884 -12.934 -65.731 1 43.39 ? C4 MPD 501 E 1 HETATM 7 O O4 MPD . . . C 3 -56.617 -13.134 -65.132 1 41.57 ? O4 MPD 501 E 1 HETATM 8 C C5 MPD . . . C 3 -58.209 -11.447 -65.76 1 46.5 ? C5 MPD 501 E 1 HETATM 9 H H11 MPD . . . C 3 -58.051 -14.648 -69.286 1 56.48 ? H11 MPD 501 E 1 HETATM 10 H H12 MPD . . . C 3 -59.771 -14.243 -69.506 1 56.48 ? H12 MPD 501 E 1 HETATM 11 H H13 MPD . . . C 3 -59.304 -15.863 -68.934 1 56.48 ? H13 MPD 501 E 1 HETATM 12 H HO2 MPD . . . C 3 -58.497 -15.499 -65.973 1 59.06 ? HO2 MPD 501 E 1 HETATM 13 H HM1 MPD . . . C 3 -60.058 -12.374 -67.483 1 62.3 ? HM1 MPD 501 E 1 HETATM 14 H HM2 MPD . . . C 3 -60.707 -13.485 -66.253 1 62.3 ? HM2 MPD 501 E 1 HETATM 15 H HM3 MPD . . . C 3 -61.128 -13.712 -67.968 1 62.3 ? HM3 MPD 501 E 1 HETATM 16 H H31 MPD . . . C 3 -57.674 -12.788 -67.86 1 62.21 ? H31 MPD 501 E 1 HETATM 17 H H32 MPD . . . C 3 -57.003 -14.263 -67.167 1 62.21 ? H32 MPD 501 E 1 HETATM 18 H H4 MPD . . . C 3 -58.679 -13.41 -65.157 1 53.3 ? H4 MPD 501 E 1 HETATM 19 H HO4 MPD . . . C 3 -55.944 -12.607 -65.616 1 49.82 ? HO4 MPD 501 E 1 HETATM 20 H H51 MPD . . . C 3 -57.389 -10.887 -65.31 1 66.48 ? H51 MPD 501 E 1 HETATM 21 H H52 MPD . . . C 3 -59.125 -11.264 -65.198 1 66.48 ? H52 MPD 501 E 1 HETATM 22 H H53 MPD . . . C 3 -58.346 -11.125 -66.792 1 66.48 ? H53 MPD 501 E 1 # _model_server_stats.io_time_ms 131 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #