data_8QU7 # _model_server_result.job_id 9QDR0T4GnPPkhMqRVuNuHg _model_server_result.datetime_utc '2024-10-11 05:26:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qu7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 8QU7 # _exptl.entry_id 8QU7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.18 _cell.angle_gamma 90 _cell.entry_id 8QU7 _cell.length_a 71.651 _cell.length_b 38.462 _cell.length_c 227.355 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QU7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y (x,y,-x+z)' _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 73 E CYS 149 1_555 A SG CYS 226 E CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 141 E CYS 217 1_555 A SG CYS 171 E CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 244 E CYS 320 1_555 A SG CYS 342 E CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 261 E CYS 337 1_555 A SG CYS 333 E CYS 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 B SG CYS 22 A CYS 22 1_555 B SG CYS 76 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 31 A CYS 31 1_555 B SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 8QU7 _atom_sites.fract_transf_matrix[1][1] 0.013957 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000044 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004398 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MPD E 1 501 503 MPD MPD . D 4 EPE E 1 502 504 EPE EPE . E 5 NA E 1 503 2 NA NA . F 6 HOH E 1 601 3 HOH HOH . F 6 HOH E 2 602 2 HOH HOH . F 6 HOH E 3 603 32 HOH HOH . F 6 HOH E 4 604 64 HOH HOH . F 6 HOH E 5 605 46 HOH HOH . F 6 HOH E 6 606 19 HOH HOH . F 6 HOH E 7 607 62 HOH HOH . F 6 HOH E 8 608 18 HOH HOH . F 6 HOH E 9 609 84 HOH HOH . F 6 HOH E 10 610 66 HOH HOH . F 6 HOH E 11 611 36 HOH HOH . F 6 HOH E 12 612 15 HOH HOH . F 6 HOH E 13 613 24 HOH HOH . F 6 HOH E 14 614 25 HOH HOH . F 6 HOH E 15 615 48 HOH HOH . F 6 HOH E 16 616 28 HOH HOH . F 6 HOH E 17 617 10 HOH HOH . F 6 HOH E 18 618 12 HOH HOH . F 6 HOH E 19 619 14 HOH HOH . F 6 HOH E 20 620 77 HOH HOH . F 6 HOH E 21 621 9 HOH HOH . F 6 HOH E 22 622 5 HOH HOH . F 6 HOH E 23 623 16 HOH HOH . F 6 HOH E 24 624 13 HOH HOH . F 6 HOH E 25 625 63 HOH HOH . F 6 HOH E 26 626 31 HOH HOH . F 6 HOH E 27 627 23 HOH HOH . F 6 HOH E 28 628 21 HOH HOH . F 6 HOH E 29 629 17 HOH HOH . F 6 HOH E 30 630 33 HOH HOH . F 6 HOH E 31 631 6 HOH HOH . F 6 HOH E 32 632 71 HOH HOH . F 6 HOH E 33 633 72 HOH HOH . F 6 HOH E 34 634 8 HOH HOH . F 6 HOH E 35 635 70 HOH HOH . F 6 HOH E 36 636 44 HOH HOH . F 6 HOH E 37 637 42 HOH HOH . F 6 HOH E 38 638 7 HOH HOH . F 6 HOH E 39 639 30 HOH HOH . F 6 HOH E 40 640 59 HOH HOH . F 6 HOH E 41 641 26 HOH HOH . F 6 HOH E 42 642 4 HOH HOH . F 6 HOH E 43 643 35 HOH HOH . F 6 HOH E 44 644 60 HOH HOH . F 6 HOH E 45 645 49 HOH HOH . F 6 HOH E 46 646 40 HOH HOH . F 6 HOH E 47 647 38 HOH HOH . F 6 HOH E 48 648 87 HOH HOH . F 6 HOH E 49 649 73 HOH HOH . F 6 HOH E 50 650 45 HOH HOH . F 6 HOH E 51 651 27 HOH HOH . F 6 HOH E 52 652 34 HOH HOH . F 6 HOH E 53 653 57 HOH HOH . F 6 HOH E 54 654 47 HOH HOH . F 6 HOH E 55 655 53 HOH HOH . F 6 HOH E 56 656 58 HOH HOH . F 6 HOH E 57 657 43 HOH HOH . F 6 HOH E 58 658 41 HOH HOH . F 6 HOH E 59 659 75 HOH HOH . F 6 HOH E 60 660 79 HOH HOH . F 6 HOH E 61 661 81 HOH HOH . F 6 HOH E 62 662 37 HOH HOH . F 6 HOH E 63 663 76 HOH HOH . F 6 HOH E 64 664 74 HOH HOH . F 6 HOH E 65 665 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . D 4 -36.226 11.283 -58.917 1 47.16 ? N1 EPE 502 E 1 HETATM 2 C C2 EPE . . . D 4 -36.405 10.733 -57.582 1 43.21 ? C2 EPE 502 E 1 HETATM 3 C C3 EPE . . . D 4 -37.395 11.534 -56.735 1 43.35 ? C3 EPE 502 E 1 HETATM 4 N N4 EPE . . . D 4 -38.222 12.391 -57.567 1 44.98 ? N4 EPE 502 E 1 HETATM 5 C C5 EPE . . . D 4 -37.427 13.371 -58.279 1 42.49 ? C5 EPE 502 E 1 HETATM 6 C C6 EPE . . . D 4 -36.252 12.734 -59.024 1 49.78 ? C6 EPE 502 E 1 HETATM 7 C C7 EPE . . . D 4 -39.337 13.051 -56.888 1 45.07 ? C7 EPE 502 E 1 HETATM 8 C C8 EPE . . . D 4 -39.336 12.935 -55.362 1 43.65 ? C8 EPE 502 E 1 HETATM 9 O O8 EPE . . . D 4 -39.774 11.664 -54.964 1 40.61 ? O8 EPE 502 E 1 HETATM 10 C C9 EPE . . . D 4 -35.16 10.602 -59.652 1 47.72 ? C9 EPE 502 E 1 HETATM 11 C C10 EPE . . . D 4 -34.026 11.505 -60.142 1 48.21 ? C10 EPE 502 E 1 HETATM 12 S S EPE . . . D 4 -32.817 10.472 -61.038 1 51.54 ? S EPE 502 E 1 HETATM 13 O O1S EPE . . . D 4 -32.001 9.594 -60.115 1 42.32 ? O1S EPE 502 E 1 HETATM 14 O O2S EPE . . . D 4 -31.718 11.3 -61.668 1 52.51 ? O2S EPE 502 E 1 HETATM 15 O O3S EPE . . . D 4 -33.545 9.64 -62.069 1 50.05 ? O3S EPE 502 E 1 HETATM 16 H H21 EPE . . . D 4 -36.769 9.715 -57.672 1 52.6 ? H21 EPE 502 E 1 HETATM 17 H H22 EPE . . . D 4 -35.444 10.725 -57.078 1 52.6 ? H22 EPE 502 E 1 HETATM 18 H H31 EPE . . . D 4 -38.033 10.846 -56.189 1 52.85 ? H31 EPE 502 E 1 HETATM 19 H H32 EPE . . . D 4 -36.844 12.147 -56.03 1 52.85 ? H32 EPE 502 E 1 HETATM 20 H H51 EPE . . . D 4 -37.04 14.093 -57.567 1 43.72 ? H51 EPE 502 E 1 HETATM 21 H H52 EPE . . . D 4 -38.061 13.882 -58.997 1 43.72 ? H52 EPE 502 E 1 HETATM 22 H H61 EPE . . . D 4 -36.32 13.002 -60.073 1 71.28 ? H61 EPE 502 E 1 HETATM 23 H H62 EPE . . . D 4 -35.328 13.127 -58.613 1 71.28 ? H62 EPE 502 E 1 HETATM 24 H H71 EPE . . . D 4 -39.308 14.105 -57.144 1 56.49 ? H71 EPE 502 E 1 HETATM 25 H H72 EPE . . . D 4 -40.26 12.615 -57.257 1 56.49 ? H72 EPE 502 E 1 HETATM 26 H H81 EPE . . . D 4 -39.999 13.687 -54.947 1 52.29 ? H81 EPE 502 E 1 HETATM 27 H H82 EPE . . . D 4 -38.329 13.098 -54.993 1 52.29 ? H82 EPE 502 E 1 HETATM 28 H HO8 EPE . . . D 4 -39.205 11.339 -54.283 1 44.22 ? HO8 EPE 502 E 1 HETATM 29 H H91 EPE . . . D 4 -34.731 9.849 -59 1 66.39 ? H91 EPE 502 E 1 HETATM 30 H H92 EPE . . . D 4 -35.604 10.121 -60.518 1 66.39 ? H92 EPE 502 E 1 HETATM 31 H H101 EPE . . . D 4 -33.545 11.983 -59.295 1 64.7 ? H101 EPE 502 E 1 HETATM 32 H H102 EPE . . . D 4 -34.423 12.265 -60.808 1 64.7 ? H102 EPE 502 E 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #