data_8QU7 # _model_server_result.job_id i4l_RkgQsatI96SZ28SOWw _model_server_result.datetime_utc '2024-10-11 05:28:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qu7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 8QU7 # _exptl.entry_id 8QU7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.18 _cell.angle_gamma 90 _cell.entry_id 8QU7 _cell.length_a 71.651 _cell.length_b 38.462 _cell.length_c 227.355 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QU7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y (x,y,-x+z)' _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 73 E CYS 149 1_555 A SG CYS 226 E CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 141 E CYS 217 1_555 A SG CYS 171 E CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 244 E CYS 320 1_555 A SG CYS 342 E CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 261 E CYS 337 1_555 A SG CYS 333 E CYS 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 B SG CYS 22 A CYS 22 1_555 B SG CYS 76 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 31 A CYS 31 1_555 B SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8QU7 _atom_sites.fract_transf_matrix[1][1] 0.013957 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000044 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004398 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MPD E 1 501 503 MPD MPD . D 4 EPE E 1 502 504 EPE EPE . E 5 NA E 1 503 2 NA NA . F 6 HOH E 1 601 3 HOH HOH . F 6 HOH E 2 602 2 HOH HOH . F 6 HOH E 3 603 32 HOH HOH . F 6 HOH E 4 604 64 HOH HOH . F 6 HOH E 5 605 46 HOH HOH . F 6 HOH E 6 606 19 HOH HOH . F 6 HOH E 7 607 62 HOH HOH . F 6 HOH E 8 608 18 HOH HOH . F 6 HOH E 9 609 84 HOH HOH . F 6 HOH E 10 610 66 HOH HOH . F 6 HOH E 11 611 36 HOH HOH . F 6 HOH E 12 612 15 HOH HOH . F 6 HOH E 13 613 24 HOH HOH . F 6 HOH E 14 614 25 HOH HOH . F 6 HOH E 15 615 48 HOH HOH . F 6 HOH E 16 616 28 HOH HOH . F 6 HOH E 17 617 10 HOH HOH . F 6 HOH E 18 618 12 HOH HOH . F 6 HOH E 19 619 14 HOH HOH . F 6 HOH E 20 620 77 HOH HOH . F 6 HOH E 21 621 9 HOH HOH . F 6 HOH E 22 622 5 HOH HOH . F 6 HOH E 23 623 16 HOH HOH . F 6 HOH E 24 624 13 HOH HOH . F 6 HOH E 25 625 63 HOH HOH . F 6 HOH E 26 626 31 HOH HOH . F 6 HOH E 27 627 23 HOH HOH . F 6 HOH E 28 628 21 HOH HOH . F 6 HOH E 29 629 17 HOH HOH . F 6 HOH E 30 630 33 HOH HOH . F 6 HOH E 31 631 6 HOH HOH . F 6 HOH E 32 632 71 HOH HOH . F 6 HOH E 33 633 72 HOH HOH . F 6 HOH E 34 634 8 HOH HOH . F 6 HOH E 35 635 70 HOH HOH . F 6 HOH E 36 636 44 HOH HOH . F 6 HOH E 37 637 42 HOH HOH . F 6 HOH E 38 638 7 HOH HOH . F 6 HOH E 39 639 30 HOH HOH . F 6 HOH E 40 640 59 HOH HOH . F 6 HOH E 41 641 26 HOH HOH . F 6 HOH E 42 642 4 HOH HOH . F 6 HOH E 43 643 35 HOH HOH . F 6 HOH E 44 644 60 HOH HOH . F 6 HOH E 45 645 49 HOH HOH . F 6 HOH E 46 646 40 HOH HOH . F 6 HOH E 47 647 38 HOH HOH . F 6 HOH E 48 648 87 HOH HOH . F 6 HOH E 49 649 73 HOH HOH . F 6 HOH E 50 650 45 HOH HOH . F 6 HOH E 51 651 27 HOH HOH . F 6 HOH E 52 652 34 HOH HOH . F 6 HOH E 53 653 57 HOH HOH . F 6 HOH E 54 654 47 HOH HOH . F 6 HOH E 55 655 53 HOH HOH . F 6 HOH E 56 656 58 HOH HOH . F 6 HOH E 57 657 43 HOH HOH . F 6 HOH E 58 658 41 HOH HOH . F 6 HOH E 59 659 75 HOH HOH . F 6 HOH E 60 660 79 HOH HOH . F 6 HOH E 61 661 81 HOH HOH . F 6 HOH E 62 662 37 HOH HOH . F 6 HOH E 63 663 76 HOH HOH . F 6 HOH E 64 664 74 HOH HOH . F 6 HOH E 65 665 80 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x -38.802 _atom_site.Cartn_y -14.522 _atom_site.Cartn_z -73.075 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 503 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #