data_8QUJ # _model_server_result.job_id 5MTU8yqggxx00Ig90X352Q _model_server_result.datetime_utc '2024-11-26 23:06:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8quj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 8QUJ # _exptl.entry_id 8QUJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 174.199 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(phenylmethyl)-1~{H}-imidazol-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8QUJ _cell.length_a 90.685 _cell.length_b 90.685 _cell.length_c 56.763 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QUJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 y,-x+y,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 0 6 'crystal symmetry operation' 6_555 x-y,x,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 A SG CYS 45 A CYS 45 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? disulf ? disulf2 A SG CYS 198 A CYS 198 1_555 A SG CYS 218 A CYS 218 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.07 ? # _chem_comp.formula 'C10 H10 N2 O' _chem_comp.formula_weight 174.199 _chem_comp.id WWR _chem_comp.mon_nstd_flag . _chem_comp.name 3-(phenylmethyl)-1~{H}-imidazol-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 C08 WWR sing 385 n n C07 N06 WWR sing 386 n n C09 C08 WWR doub 387 n y C09 C10 WWR sing 388 n y C08 C13 WWR sing 389 n y C10 C11 WWR doub 390 n y C13 C12 WWR doub 391 n y N06 C02 WWR sing 392 n n N06 C05 WWR sing 393 n n O01 C02 WWR doub 394 n n C11 C12 WWR sing 395 n y C02 N03 WWR sing 396 n n C05 C04 WWR doub 397 n n N03 C04 WWR sing 398 n n C10 H1 WWR sing 399 n n C13 H2 WWR sing 400 n n N03 H3 WWR sing 401 n n C04 H4 WWR sing 402 n n C05 H5 WWR sing 403 n n C07 H6 WWR sing 404 n n C07 H7 WWR sing 405 n n C09 H8 WWR sing 406 n n C11 H9 WWR sing 407 n n C12 H10 WWR sing 408 n n # _atom_sites.entry_id 8QUJ _atom_sites.fract_transf_matrix[1][1] 0.011027 _atom_sites.fract_transf_matrix[1][2] 0.006367 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 401 EDO EDO . C 2 EDO A 1 402 501 EDO EDO . D 2 EDO A 1 403 701 EDO EDO . E 2 EDO A 1 404 901 EDO EDO . F 3 WWR A 1 405 1001 WWR LIG . G 4 HOH A 1 501 184 HOH HOH . G 4 HOH A 2 502 264 HOH HOH . G 4 HOH A 3 503 109 HOH HOH . G 4 HOH A 4 504 256 HOH HOH . G 4 HOH A 5 505 270 HOH HOH . G 4 HOH A 6 506 120 HOH HOH . G 4 HOH A 7 507 64 HOH HOH . G 4 HOH A 8 508 252 HOH HOH . G 4 HOH A 9 509 221 HOH HOH . G 4 HOH A 10 510 218 HOH HOH . G 4 HOH A 11 511 76 HOH HOH . G 4 HOH A 12 512 227 HOH HOH . G 4 HOH A 13 513 47 HOH HOH . G 4 HOH A 14 514 121 HOH HOH . G 4 HOH A 15 515 45 HOH HOH . G 4 HOH A 16 516 191 HOH HOH . G 4 HOH A 17 517 137 HOH HOH . G 4 HOH A 18 518 34 HOH HOH . G 4 HOH A 19 519 117 HOH HOH . G 4 HOH A 20 520 32 HOH HOH . G 4 HOH A 21 521 60 HOH HOH . G 4 HOH A 22 522 95 HOH HOH . G 4 HOH A 23 523 273 HOH HOH . G 4 HOH A 24 524 59 HOH HOH . G 4 HOH A 25 525 1 HOH HOH . G 4 HOH A 26 526 190 HOH HOH . G 4 HOH A 27 527 44 HOH HOH . G 4 HOH A 28 528 168 HOH HOH . G 4 HOH A 29 529 171 HOH HOH . G 4 HOH A 30 530 155 HOH HOH . G 4 HOH A 31 531 251 HOH HOH . G 4 HOH A 32 532 29 HOH HOH . G 4 HOH A 33 533 52 HOH HOH . G 4 HOH A 34 534 75 HOH HOH . G 4 HOH A 35 535 18 HOH HOH . G 4 HOH A 36 536 50 HOH HOH . G 4 HOH A 37 537 108 HOH HOH . G 4 HOH A 38 538 90 HOH HOH . G 4 HOH A 39 539 188 HOH HOH . G 4 HOH A 40 540 39 HOH HOH . G 4 HOH A 41 541 99 HOH HOH . G 4 HOH A 42 542 43 HOH HOH . G 4 HOH A 43 543 70 HOH HOH . G 4 HOH A 44 544 118 HOH HOH . G 4 HOH A 45 545 84 HOH HOH . G 4 HOH A 46 546 93 HOH HOH . G 4 HOH A 47 547 159 HOH HOH . G 4 HOH A 48 548 236 HOH HOH . G 4 HOH A 49 549 245 HOH HOH . G 4 HOH A 50 550 7 HOH HOH . G 4 HOH A 51 551 77 HOH HOH . G 4 HOH A 52 552 61 HOH HOH . G 4 HOH A 53 553 185 HOH HOH . G 4 HOH A 54 554 276 HOH HOH . G 4 HOH A 55 555 153 HOH HOH . G 4 HOH A 56 556 212 HOH HOH . G 4 HOH A 57 557 111 HOH HOH . G 4 HOH A 58 558 198 HOH HOH . G 4 HOH A 59 559 92 HOH HOH . G 4 HOH A 60 560 229 HOH HOH . G 4 HOH A 61 561 3 HOH HOH . G 4 HOH A 62 562 166 HOH HOH . G 4 HOH A 63 563 242 HOH HOH . G 4 HOH A 64 564 125 HOH HOH . G 4 HOH A 65 565 49 HOH HOH . G 4 HOH A 66 566 124 HOH HOH . G 4 HOH A 67 567 12 HOH HOH . G 4 HOH A 68 568 72 HOH HOH . G 4 HOH A 69 569 5 HOH HOH . G 4 HOH A 70 570 35 HOH HOH . G 4 HOH A 71 571 169 HOH HOH . G 4 HOH A 72 572 89 HOH HOH . G 4 HOH A 73 573 140 HOH HOH . G 4 HOH A 74 574 65 HOH HOH . G 4 HOH A 75 575 146 HOH HOH . G 4 HOH A 76 576 67 HOH HOH . G 4 HOH A 77 577 96 HOH HOH . G 4 HOH A 78 578 260 HOH HOH . G 4 HOH A 79 579 16 HOH HOH . G 4 HOH A 80 580 97 HOH HOH . G 4 HOH A 81 581 271 HOH HOH . G 4 HOH A 82 582 66 HOH HOH . G 4 HOH A 83 583 28 HOH HOH . G 4 HOH A 84 584 268 HOH HOH . G 4 HOH A 85 585 209 HOH HOH . G 4 HOH A 86 586 6 HOH HOH . G 4 HOH A 87 587 204 HOH HOH . G 4 HOH A 88 588 23 HOH HOH . G 4 HOH A 89 589 116 HOH HOH . G 4 HOH A 90 590 33 HOH HOH . G 4 HOH A 91 591 15 HOH HOH . G 4 HOH A 92 592 149 HOH HOH . G 4 HOH A 93 593 106 HOH HOH . G 4 HOH A 94 594 114 HOH HOH . G 4 HOH A 95 595 24 HOH HOH . G 4 HOH A 96 596 152 HOH HOH . G 4 HOH A 97 597 26 HOH HOH . G 4 HOH A 98 598 179 HOH HOH . G 4 HOH A 99 599 172 HOH HOH . G 4 HOH A 100 600 20 HOH HOH . G 4 HOH A 101 601 27 HOH HOH . G 4 HOH A 102 602 10 HOH HOH . G 4 HOH A 103 603 22 HOH HOH . G 4 HOH A 104 604 211 HOH HOH . G 4 HOH A 105 605 4 HOH HOH . G 4 HOH A 106 606 73 HOH HOH . G 4 HOH A 107 607 41 HOH HOH . G 4 HOH A 108 608 262 HOH HOH . G 4 HOH A 109 609 79 HOH HOH . G 4 HOH A 110 610 123 HOH HOH . G 4 HOH A 111 611 88 HOH HOH . G 4 HOH A 112 612 30 HOH HOH . G 4 HOH A 113 613 177 HOH HOH . G 4 HOH A 114 614 175 HOH HOH . G 4 HOH A 115 615 31 HOH HOH . G 4 HOH A 116 616 53 HOH HOH . G 4 HOH A 117 617 164 HOH HOH . G 4 HOH A 118 618 40 HOH HOH . G 4 HOH A 119 619 81 HOH HOH . G 4 HOH A 120 620 274 HOH HOH . G 4 HOH A 121 621 17 HOH HOH . G 4 HOH A 122 622 231 HOH HOH . G 4 HOH A 123 623 98 HOH HOH . G 4 HOH A 124 624 63 HOH HOH . G 4 HOH A 125 625 14 HOH HOH . G 4 HOH A 126 626 126 HOH HOH . G 4 HOH A 127 627 154 HOH HOH . G 4 HOH A 128 628 2 HOH HOH . G 4 HOH A 129 629 103 HOH HOH . G 4 HOH A 130 630 113 HOH HOH . G 4 HOH A 131 631 161 HOH HOH . G 4 HOH A 132 632 62 HOH HOH . G 4 HOH A 133 633 36 HOH HOH . G 4 HOH A 134 634 134 HOH HOH . G 4 HOH A 135 635 215 HOH HOH . G 4 HOH A 136 636 130 HOH HOH . G 4 HOH A 137 637 56 HOH HOH . G 4 HOH A 138 638 112 HOH HOH . G 4 HOH A 139 639 232 HOH HOH . G 4 HOH A 140 640 167 HOH HOH . G 4 HOH A 141 641 19 HOH HOH . G 4 HOH A 142 642 42 HOH HOH . G 4 HOH A 143 643 71 HOH HOH . G 4 HOH A 144 644 51 HOH HOH . G 4 HOH A 145 645 145 HOH HOH . G 4 HOH A 146 646 165 HOH HOH . G 4 HOH A 147 647 248 HOH HOH . G 4 HOH A 148 648 162 HOH HOH . G 4 HOH A 149 649 147 HOH HOH . G 4 HOH A 150 650 25 HOH HOH . G 4 HOH A 151 651 238 HOH HOH . G 4 HOH A 152 652 269 HOH HOH . G 4 HOH A 153 653 257 HOH HOH . G 4 HOH A 154 654 259 HOH HOH . G 4 HOH A 155 655 250 HOH HOH . G 4 HOH A 156 656 265 HOH HOH . G 4 HOH A 157 657 183 HOH HOH . G 4 HOH A 158 658 78 HOH HOH . G 4 HOH A 159 659 275 HOH HOH . G 4 HOH A 160 660 263 HOH HOH . G 4 HOH A 161 661 205 HOH HOH . G 4 HOH A 162 662 237 HOH HOH . G 4 HOH A 163 663 217 HOH HOH . G 4 HOH A 164 664 254 HOH HOH . G 4 HOH A 165 665 176 HOH HOH . G 4 HOH A 166 666 186 HOH HOH . G 4 HOH A 167 667 239 HOH HOH . G 4 HOH A 168 668 230 HOH HOH . G 4 HOH A 169 669 208 HOH HOH . G 4 HOH A 170 670 144 HOH HOH . G 4 HOH A 171 671 243 HOH HOH . G 4 HOH A 172 672 133 HOH HOH . G 4 HOH A 173 673 197 HOH HOH . G 4 HOH A 174 674 138 HOH HOH . G 4 HOH A 175 675 122 HOH HOH . G 4 HOH A 176 676 178 HOH HOH . G 4 HOH A 177 677 38 HOH HOH . G 4 HOH A 178 678 228 HOH HOH . G 4 HOH A 179 679 57 HOH HOH . G 4 HOH A 180 680 37 HOH HOH . G 4 HOH A 181 681 54 HOH HOH . G 4 HOH A 182 682 266 HOH HOH . G 4 HOH A 183 683 102 HOH HOH . G 4 HOH A 184 684 80 HOH HOH . G 4 HOH A 185 685 94 HOH HOH . G 4 HOH A 186 686 240 HOH HOH . G 4 HOH A 187 687 233 HOH HOH . G 4 HOH A 188 688 194 HOH HOH . G 4 HOH A 189 689 181 HOH HOH . G 4 HOH A 190 690 258 HOH HOH . G 4 HOH A 191 691 141 HOH HOH . G 4 HOH A 192 692 21 HOH HOH . G 4 HOH A 193 693 119 HOH HOH . G 4 HOH A 194 694 82 HOH HOH . G 4 HOH A 195 695 83 HOH HOH . G 4 HOH A 196 696 234 HOH HOH . G 4 HOH A 197 697 219 HOH HOH . G 4 HOH A 198 698 74 HOH HOH . G 4 HOH A 199 699 157 HOH HOH . G 4 HOH A 200 700 173 HOH HOH . G 4 HOH A 201 701 201 HOH HOH . G 4 HOH A 202 702 160 HOH HOH . G 4 HOH A 203 703 225 HOH HOH . G 4 HOH A 204 704 222 HOH HOH . G 4 HOH A 205 705 255 HOH HOH . G 4 HOH A 206 706 253 HOH HOH . G 4 HOH A 207 707 68 HOH HOH . G 4 HOH A 208 708 267 HOH HOH . G 4 HOH A 209 709 195 HOH HOH . G 4 HOH A 210 710 150 HOH HOH . G 4 HOH A 211 711 85 HOH HOH . G 4 HOH A 212 712 132 HOH HOH . G 4 HOH A 213 713 100 HOH HOH . G 4 HOH A 214 714 69 HOH HOH . G 4 HOH A 215 715 55 HOH HOH . G 4 HOH A 216 716 101 HOH HOH . G 4 HOH A 217 717 261 HOH HOH . G 4 HOH A 218 718 223 HOH HOH . G 4 HOH A 219 719 207 HOH HOH . G 4 HOH A 220 720 91 HOH HOH . G 4 HOH A 221 721 174 HOH HOH . G 4 HOH A 222 722 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 WWR . . . F 3 -21.728 -26.119 -2.639 1 49.92 ? C10 WWR 405 A 1 HETATM 2 C C13 WWR . . . F 3 -18.957 -26.293 -2.403 1 51.75 ? C13 WWR 405 A 1 HETATM 3 O O01 WWR . . . F 3 -16.012 -23.83 -2.139 1 57.1 ? O01 WWR 405 A 1 HETATM 4 C C02 WWR . . . F 3 -16.939 -23.296 -1.63 1 53.41 ? C02 WWR 405 A 1 HETATM 5 N N03 WWR . . . F 3 -16.968 -22.54 -0.373 1 53.76 ? N03 WWR 405 A 1 HETATM 6 C C04 WWR . . . F 3 -18.326 -22.119 -0.082 1 53.52 ? C04 WWR 405 A 1 HETATM 7 C C05 WWR . . . F 3 -19.147 -22.595 -1.214 1 48.35 ? C05 WWR 405 A 1 HETATM 8 N N06 WWR . . . F 3 -18.298 -23.302 -2.154 1 55.8 ? N06 WWR 405 A 1 HETATM 9 C C07 WWR . . . F 3 -18.713 -23.967 -3.381 1 55.23 ? C07 WWR 405 A 1 HETATM 10 C C08 WWR . . . F 3 -19.57 -25.152 -2.94 1 52.31 ? C08 WWR 405 A 1 HETATM 11 C C09 WWR . . . F 3 -20.942 -25.05 -3.046 1 49.45 ? C09 WWR 405 A 1 HETATM 12 C C11 WWR . . . F 3 -21.13 -27.272 -2.114 1 53.43 ? C11 WWR 405 A 1 HETATM 13 C C12 WWR . . . F 3 -19.743 -27.372 -2.005 1 50.73 ? C12 WWR 405 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #