data_8QV1 # _model_server_result.job_id '_DNweIGKeBF1bcyFWa4MGA' _model_server_result.datetime_utc '2024-10-27 06:26:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qv1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8QV1 # _exptl.entry_id 8QV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 217.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl 2-(2-oxidanylidene-1~{H}-quinolin-4-yl)ethanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8QV1 _cell.length_a 90.345 _cell.length_b 90.345 _cell.length_c 56.581 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'point symmetry operation' ? ? -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 0 0 0 5 'point symmetry operation' ? ? 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 0 6 'point symmetry operation' ? ? 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 A SG CYS 45 A CYS 45 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? disulf ? disulf2 A SG CYS 198 A CYS 198 1_555 A SG CYS 218 A CYS 218 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.046 ? # _chem_comp.formula 'C12 H11 N O3' _chem_comp.formula_weight 217.221 _chem_comp.id X0H _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl 2-(2-oxidanylidene-1~{H}-quinolin-4-yl)ethanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C12 X0H doub 376 n y C13 C14 X0H sing 377 n y C12 C11 X0H sing 378 n y C14 C15 X0H doub 379 n y C11 N10 X0H sing 380 n n C11 C16 X0H doub 381 n y C15 C16 X0H sing 382 n y N10 C08 X0H sing 383 n n C16 C06 X0H sing 384 n n O04 C03 X0H doub 385 n n C08 O09 X0H doub 386 n n C08 C07 X0H sing 387 n n C01 O02 X0H sing 388 n n C06 C07 X0H doub 389 n n C06 C05 X0H sing 390 n n C03 C05 X0H sing 391 n n C03 O02 X0H sing 392 n n C13 H1 X0H sing 393 n n C15 H2 X0H sing 394 n n C01 H3 X0H sing 395 n n C01 H4 X0H sing 396 n n C01 H5 X0H sing 397 n n C05 H6 X0H sing 398 n n C05 H7 X0H sing 399 n n C07 H8 X0H sing 400 n n N10 H9 X0H sing 401 n n C12 H10 X0H sing 402 n n C14 H11 X0H sing 403 n n # _atom_sites.entry_id 8QV1 _atom_sites.fract_transf_matrix[1][1] 0.011069 _atom_sites.fract_transf_matrix[1][2] 0.006391 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012781 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 X0H A 1 301 301 X0H X0H . C 3 HOH A 1 401 401 HOH HOH . C 3 HOH A 2 402 402 HOH HOH . C 3 HOH A 3 403 403 HOH HOH . C 3 HOH A 4 404 404 HOH HOH . C 3 HOH A 5 405 405 HOH HOH . C 3 HOH A 6 406 406 HOH HOH . C 3 HOH A 7 407 407 HOH HOH . C 3 HOH A 8 408 408 HOH HOH . C 3 HOH A 9 409 409 HOH HOH . C 3 HOH A 10 410 410 HOH HOH . C 3 HOH A 11 411 411 HOH HOH . C 3 HOH A 12 412 412 HOH HOH . C 3 HOH A 13 413 413 HOH HOH . C 3 HOH A 14 414 414 HOH HOH . C 3 HOH A 15 415 415 HOH HOH . C 3 HOH A 16 416 416 HOH HOH . C 3 HOH A 17 417 417 HOH HOH . C 3 HOH A 18 418 418 HOH HOH . C 3 HOH A 19 419 419 HOH HOH . C 3 HOH A 20 420 420 HOH HOH . C 3 HOH A 21 421 421 HOH HOH . C 3 HOH A 22 422 422 HOH HOH . C 3 HOH A 23 423 423 HOH HOH . C 3 HOH A 24 424 424 HOH HOH . C 3 HOH A 25 425 425 HOH HOH . C 3 HOH A 26 426 426 HOH HOH . C 3 HOH A 27 427 427 HOH HOH . C 3 HOH A 28 428 428 HOH HOH . C 3 HOH A 29 429 429 HOH HOH . C 3 HOH A 30 430 430 HOH HOH . C 3 HOH A 31 431 431 HOH HOH . C 3 HOH A 32 432 432 HOH HOH . C 3 HOH A 33 433 433 HOH HOH . C 3 HOH A 34 434 434 HOH HOH . C 3 HOH A 35 435 435 HOH HOH . C 3 HOH A 36 436 436 HOH HOH . C 3 HOH A 37 437 437 HOH HOH . C 3 HOH A 38 438 438 HOH HOH . C 3 HOH A 39 439 439 HOH HOH . C 3 HOH A 40 440 440 HOH HOH . C 3 HOH A 41 441 441 HOH HOH . C 3 HOH A 42 442 442 HOH HOH . C 3 HOH A 43 443 443 HOH HOH . C 3 HOH A 44 444 444 HOH HOH . C 3 HOH A 45 445 445 HOH HOH . C 3 HOH A 46 446 446 HOH HOH . C 3 HOH A 47 447 447 HOH HOH . C 3 HOH A 48 448 448 HOH HOH . C 3 HOH A 49 449 449 HOH HOH . C 3 HOH A 50 450 450 HOH HOH . C 3 HOH A 51 451 451 HOH HOH . C 3 HOH A 52 452 452 HOH HOH . C 3 HOH A 53 453 453 HOH HOH . C 3 HOH A 54 454 454 HOH HOH . C 3 HOH A 55 455 455 HOH HOH . C 3 HOH A 56 456 456 HOH HOH . C 3 HOH A 57 457 457 HOH HOH . C 3 HOH A 58 458 458 HOH HOH . C 3 HOH A 59 459 459 HOH HOH . C 3 HOH A 60 460 460 HOH HOH . C 3 HOH A 61 461 461 HOH HOH . C 3 HOH A 62 462 462 HOH HOH . C 3 HOH A 63 463 463 HOH HOH . C 3 HOH A 64 464 464 HOH HOH . C 3 HOH A 65 465 465 HOH HOH . C 3 HOH A 66 466 466 HOH HOH . C 3 HOH A 67 467 467 HOH HOH . C 3 HOH A 68 468 468 HOH HOH . C 3 HOH A 69 469 469 HOH HOH . C 3 HOH A 70 470 470 HOH HOH . C 3 HOH A 71 471 471 HOH HOH . C 3 HOH A 72 472 472 HOH HOH . C 3 HOH A 73 473 473 HOH HOH . C 3 HOH A 74 474 474 HOH HOH . C 3 HOH A 75 475 475 HOH HOH . C 3 HOH A 76 476 476 HOH HOH . C 3 HOH A 77 477 477 HOH HOH . C 3 HOH A 78 478 478 HOH HOH . C 3 HOH A 79 479 479 HOH HOH . C 3 HOH A 80 480 480 HOH HOH . C 3 HOH A 81 481 481 HOH HOH . C 3 HOH A 82 482 482 HOH HOH . C 3 HOH A 83 483 483 HOH HOH . C 3 HOH A 84 484 484 HOH HOH . C 3 HOH A 85 485 485 HOH HOH . C 3 HOH A 86 486 486 HOH HOH . C 3 HOH A 87 487 487 HOH HOH . C 3 HOH A 88 488 488 HOH HOH . C 3 HOH A 89 489 489 HOH HOH . C 3 HOH A 90 490 490 HOH HOH . C 3 HOH A 91 491 491 HOH HOH . C 3 HOH A 92 492 492 HOH HOH . C 3 HOH A 93 493 493 HOH HOH . C 3 HOH A 94 494 494 HOH HOH . C 3 HOH A 95 495 495 HOH HOH . C 3 HOH A 96 496 496 HOH HOH . C 3 HOH A 97 497 497 HOH HOH . C 3 HOH A 98 498 498 HOH HOH . C 3 HOH A 99 499 499 HOH HOH . C 3 HOH A 100 500 500 HOH HOH . C 3 HOH A 101 501 501 HOH HOH . C 3 HOH A 102 502 502 HOH HOH . C 3 HOH A 103 503 503 HOH HOH . C 3 HOH A 104 504 504 HOH HOH . C 3 HOH A 105 505 505 HOH HOH . C 3 HOH A 106 506 506 HOH HOH . C 3 HOH A 107 507 507 HOH HOH . C 3 HOH A 108 508 508 HOH HOH . C 3 HOH A 109 509 509 HOH HOH . C 3 HOH A 110 510 510 HOH HOH . C 3 HOH A 111 511 511 HOH HOH . C 3 HOH A 112 512 512 HOH HOH . C 3 HOH A 113 513 513 HOH HOH . C 3 HOH A 114 514 514 HOH HOH . C 3 HOH A 115 515 515 HOH HOH . C 3 HOH A 116 516 516 HOH HOH . C 3 HOH A 117 517 517 HOH HOH . C 3 HOH A 118 518 518 HOH HOH . C 3 HOH A 119 519 519 HOH HOH . C 3 HOH A 120 520 520 HOH HOH . C 3 HOH A 121 521 521 HOH HOH . C 3 HOH A 122 522 522 HOH HOH . C 3 HOH A 123 523 523 HOH HOH . C 3 HOH A 124 524 524 HOH HOH . C 3 HOH A 125 525 525 HOH HOH . C 3 HOH A 126 526 526 HOH HOH . C 3 HOH A 127 527 527 HOH HOH . C 3 HOH A 128 528 528 HOH HOH . C 3 HOH A 129 529 529 HOH HOH . C 3 HOH A 130 530 530 HOH HOH . C 3 HOH A 131 531 531 HOH HOH . C 3 HOH A 132 532 532 HOH HOH . C 3 HOH A 133 533 533 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 X0H . . . B 2 18.421 -21.784 -0.913 1 37.42 ? C13 X0H 301 A 1 HETATM 2 C C15 X0H . . . B 2 19.609 -22.621 1.073 1 40.67 ? C15 X0H 301 A 1 HETATM 3 C C01 X0H . . . B 2 22.601 -25.906 2.902 1 54.3 ? C01 X0H 301 A 1 HETATM 4 O O02 X0H . . . B 2 21.633 -25.554 3.838 1 51.19 ? O02 X0H 301 A 1 HETATM 5 C C03 X0H . . . B 2 20.384 -25.257 3.286 1 48.61 ? C03 X0H 301 A 1 HETATM 6 O O04 X0H . . . B 2 19.929 -25.938 2.405 1 47.68 ? O04 X0H 301 A 1 HETATM 7 C C05 X0H . . . B 2 19.631 -24.036 3.837 1 45.49 ? C05 X0H 301 A 1 HETATM 8 C C06 X0H . . . B 2 18.36 -23.764 3.017 1 43.5 ? C06 X0H 301 A 1 HETATM 9 C C07 X0H . . . B 2 17.07 -24.223 3.563 1 40.07 ? C07 X0H 301 A 1 HETATM 10 C C08 X0H . . . B 2 15.799 -24.011 2.834 1 41.38 ? C08 X0H 301 A 1 HETATM 11 O O09 X0H . . . B 2 14.72 -24.367 3.287 1 38.21 ? O09 X0H 301 A 1 HETATM 12 N N10 X0H . . . B 2 15.922 -23.331 1.547 1 39.85 ? N10 X0H 301 A 1 HETATM 13 C C11 X0H . . . B 2 17.231 -22.85 0.946 1 40.19 ? C11 X0H 301 A 1 HETATM 14 C C12 X0H . . . B 2 17.234 -22.206 -0.327 1 43.52 ? C12 X0H 301 A 1 HETATM 15 C C14 X0H . . . B 2 19.607 -21.997 -0.192 1 41.42 ? C14 X0H 301 A 1 HETATM 16 C C16 X0H . . . B 2 18.418 -23.064 1.649 1 41.51 ? C16 X0H 301 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #