data_8QV2 # _model_server_result.job_id ri2TupLATRu5PtehWikXEA _model_server_result.datetime_utc '2024-10-10 01:14:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qv2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"QC","auth_seq_id":501}' # _entry.id 8QV2 # _exptl.entry_id 8QV2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QV2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QV2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 90-meric _pdbx_struct_assembly.oligomeric_count 90 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 MC N N ? 8 NC N N ? 8 OC N N ? 8 PC N N ? 8 QC N N ? 8 RC N N ? 8 SC N N ? 8 TC N N ? 8 UC N N ? 8 VC N N ? 8 WC N N ? 8 XC N N ? 8 YC N N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 174 n n PG O2G GTP sing 175 n n PG O3G GTP sing 176 n n PG O3B GTP sing 177 n n O2G HOG2 GTP sing 178 n n O3G HOG3 GTP sing 179 n n O3B PB GTP sing 180 n n PB O1B GTP doub 181 n n PB O2B GTP sing 182 n n PB O3A GTP sing 183 n n O2B HOB2 GTP sing 184 n n O3A PA GTP sing 185 n n PA O1A GTP doub 186 n n PA O2A GTP sing 187 n n PA O5' GTP sing 188 n n O2A HOA2 GTP sing 189 n n O5' C5' GTP sing 190 n n C5' C4' GTP sing 191 n n C5' H5' GTP sing 192 n n C5' "H5''" GTP sing 193 n n C4' O4' GTP sing 194 n n C4' C3' GTP sing 195 n n C4' H4' GTP sing 196 n n O4' C1' GTP sing 197 n n C3' O3' GTP sing 198 n n C3' C2' GTP sing 199 n n C3' H3' GTP sing 200 n n O3' HO3' GTP sing 201 n n C2' O2' GTP sing 202 n n C2' C1' GTP sing 203 n n C2' H2' GTP sing 204 n n O2' HO2' GTP sing 205 n n C1' N9 GTP sing 206 n n C1' H1' GTP sing 207 n n N9 C8 GTP sing 208 n y N9 C4 GTP sing 209 n y C8 N7 GTP doub 210 n y C8 H8 GTP sing 211 n n N7 C5 GTP sing 212 n y C5 C6 GTP sing 213 n n C5 C4 GTP doub 214 n y C6 O6 GTP doub 215 n n C6 N1 GTP sing 216 n n N1 C2 GTP sing 217 n n N1 HN1 GTP sing 218 n n C2 N2 GTP sing 219 n n C2 N3 GTP doub 220 n n N2 HN21 GTP sing 221 n n N2 HN22 GTP sing 222 n n N3 C4 GTP sing 223 n n # _atom_sites.entry_id 8QV2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code MC 8 GTP b 1 501 501 GTP GTP . NC 8 GTP c 1 501 501 GTP GTP . OC 8 GTP d 1 501 501 GTP GTP . PC 8 GTP e 1 501 501 GTP GTP . QC 8 GTP f 1 501 501 GTP GTP . RC 8 GTP g 1 501 501 GTP GTP . SC 8 GTP h 1 501 501 GTP GTP . TC 8 GTP i 1 501 501 GTP GTP . UC 8 GTP j 1 501 501 GTP GTP . VC 8 GTP k 1 501 501 GTP GTP . WC 8 GTP l 1 501 501 GTP GTP . XC 8 GTP m 1 501 501 GTP GTP . YC 8 GTP n 1 501 501 GTP GTP . ZC 9 GDP a 1 501 501 GDP GDP . AD 10 HOH Ue 1 801 803 HOH HOH . BD 10 HOH Ui 1 801 803 HOH HOH . CD 10 HOH Um 1 801 803 HOH HOH . DD 10 HOH Ua 1 801 803 HOH HOH . ED 10 HOH Ug 1 801 803 HOH HOH . FD 10 HOH Uk 1 801 803 HOH HOH . GD 10 HOH Uc 1 801 803 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . QC 8 346.357 358.364 330.732 1 964.06 ? PG GTP 501 f 1 HETATM 2 O O1G GTP . . . QC 8 345.36 358.196 329.612 1 964.06 ? O1G GTP 501 f 1 HETATM 3 O O2G GTP . . . QC 8 346.178 357.264 331.752 1 964.06 ? O2G GTP 501 f 1 HETATM 4 O O3G GTP . . . QC 8 347.759 358.311 330.176 1 964.06 ? O3G GTP 501 f 1 HETATM 5 O O3B GTP . . . QC 8 346.106 359.794 331.429 1 964.06 ? O3B GTP 501 f 1 HETATM 6 P PB GTP . . . QC 8 345.847 361.11 330.535 1 964.06 ? PB GTP 501 f 1 HETATM 7 O O1B GTP . . . QC 8 345.894 362.334 331.417 1 964.06 ? O1B GTP 501 f 1 HETATM 8 O O2B GTP . . . QC 8 346.85 361.207 329.411 1 964.06 ? O2B GTP 501 f 1 HETATM 9 O O3A GTP . . . QC 8 344.353 360.908 329.967 1 964.06 ? O3A GTP 501 f 1 HETATM 10 P PA GTP . . . QC 8 343.094 361.052 330.96 1 964.06 ? PA GTP 501 f 1 HETATM 11 O O1A GTP . . . QC 8 341.954 360.2 330.46 1 964.06 ? O1A GTP 501 f 1 HETATM 12 O O2A GTP . . . QC 8 343.475 360.675 332.372 1 964.06 ? O2A GTP 501 f 1 HETATM 13 O O5' GTP . . . QC 8 342.69 362.61 330.87 1 964.06 ? O5' GTP 501 f 1 HETATM 14 C C5' GTP . . . QC 8 341.402 363.005 330.445 1 964.06 ? C5' GTP 501 f 1 HETATM 15 C C4' GTP . . . QC 8 341.367 363.226 328.939 1 964.06 ? C4' GTP 501 f 1 HETATM 16 O O4' GTP . . . QC 8 341.485 361.99 328.264 1 964.06 ? O4' GTP 501 f 1 HETATM 17 C C3' GTP . . . QC 8 340.046 363.833 328.501 1 964.06 ? C3' GTP 501 f 1 HETATM 18 O O3' GTP . . . QC 8 340.19 365.212 328.254 1 964.06 ? O3' GTP 501 f 1 HETATM 19 C C2' GTP . . . QC 8 339.689 363.105 327.223 1 964.06 ? C2' GTP 501 f 1 HETATM 20 O O2' GTP . . . QC 8 339.811 363.97 326.118 1 964.06 ? O2' GTP 501 f 1 HETATM 21 C C1' GTP . . . QC 8 340.671 361.946 327.106 1 964.06 ? C1' GTP 501 f 1 HETATM 22 N N9 GTP . . . QC 8 339.953 360.656 327.078 1 964.06 ? N9 GTP 501 f 1 HETATM 23 C C8 GTP . . . QC 8 340.326 359.534 327.772 1 964.06 ? C8 GTP 501 f 1 HETATM 24 N N7 GTP . . . QC 8 339.449 358.543 327.503 1 964.06 ? N7 GTP 501 f 1 HETATM 25 C C5 GTP . . . QC 8 338.524 359.008 326.636 1 964.06 ? C5 GTP 501 f 1 HETATM 26 C C6 GTP . . . QC 8 337.421 358.407 326.045 1 964.06 ? C6 GTP 501 f 1 HETATM 27 O O6 GTP . . . QC 8 337.151 357.233 326.293 1 964.06 ? O6 GTP 501 f 1 HETATM 28 N N1 GTP . . . QC 8 336.631 359.13 325.177 1 964.06 ? N1 GTP 501 f 1 HETATM 29 C C2 GTP . . . QC 8 336.94 360.446 324.904 1 964.06 ? C2 GTP 501 f 1 HETATM 30 N N2 GTP . . . QC 8 336.18 361.148 324.069 1 964.06 ? N2 GTP 501 f 1 HETATM 31 N N3 GTP . . . QC 8 338.041 361.036 325.496 1 964.06 ? N3 GTP 501 f 1 HETATM 32 C C4 GTP . . . QC 8 338.826 360.334 326.353 1 964.06 ? C4 GTP 501 f 1 # _model_server_stats.io_time_ms 99 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 679 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 32 #