data_8QV4 # _model_server_result.job_id LAi729xs1XXVfOzHsvTQZg _model_server_result.datetime_utc '2024-11-25 11:50:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qv4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 8QV4 # _exptl.entry_id 8QV4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 234.251 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl 2-(3-oxidanylidene-2,4-dihydroquinoxalin-1-yl)ethanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8QV4 _cell.length_a 90.399 _cell.length_b 90.399 _cell.length_c 56.654 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 y,-x+y,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 0 6 'crystal symmetry operation' 6_555 x-y,x,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 A SG CYS 45 A CYS 45 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? disulf ? disulf2 A SG CYS 198 A CYS 198 1_555 A SG CYS 218 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? # _chem_comp.formula 'C12 H14 N2 O3' _chem_comp.formula_weight 234.251 _chem_comp.id WZX _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl 2-(3-oxidanylidene-2,4-dihydroquinoxalin-1-yl)ethanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C13 WZX doub 385 n y C14 C15 WZX sing 386 n y C13 C12 WZX sing 387 n y C15 C16 WZX doub 388 n y C12 N11 WZX sing 389 n n C12 C17 WZX doub 390 n y C16 C17 WZX sing 391 n y N11 C09 WZX sing 392 n n C17 N07 WZX sing 393 n n C09 O10 WZX doub 394 n n C09 C08 WZX sing 395 n n O05 C04 WZX doub 396 n n N07 C08 WZX sing 397 n n N07 C06 WZX sing 398 n n C04 C06 WZX sing 399 n n C04 O03 WZX sing 400 n n O03 C02 WZX sing 401 n n C02 C01 WZX sing 402 n n C13 H1 WZX sing 403 n n C15 H2 WZX sing 404 n n C01 H3 WZX sing 405 n n C01 H4 WZX sing 406 n n C01 H5 WZX sing 407 n n C02 H6 WZX sing 408 n n C02 H7 WZX sing 409 n n C06 H8 WZX sing 410 n n C06 H9 WZX sing 411 n n C08 H10 WZX sing 412 n n C08 H11 WZX sing 413 n n N11 H12 WZX sing 414 n n C14 H13 WZX sing 415 n n C16 H14 WZX sing 416 n n # _atom_sites.entry_id 8QV4 _atom_sites.fract_transf_matrix[1][1] 0.011062 _atom_sites.fract_transf_matrix[1][2] 0.006387 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 301 EDO EDO . C 2 EDO A 1 302 401 EDO EDO . D 3 WZX A 1 303 1 WZX LIG . E 4 HOH A 1 401 74 HOH HOH . E 4 HOH A 2 402 63 HOH HOH . E 4 HOH A 3 403 23 HOH HOH . E 4 HOH A 4 404 14 HOH HOH . E 4 HOH A 5 405 34 HOH HOH . E 4 HOH A 6 406 35 HOH HOH . E 4 HOH A 7 407 19 HOH HOH . E 4 HOH A 8 408 17 HOH HOH . E 4 HOH A 9 409 32 HOH HOH . E 4 HOH A 10 410 72 HOH HOH . E 4 HOH A 11 411 43 HOH HOH . E 4 HOH A 12 412 9 HOH HOH . E 4 HOH A 13 413 73 HOH HOH . E 4 HOH A 14 414 44 HOH HOH . E 4 HOH A 15 415 77 HOH HOH . E 4 HOH A 16 416 16 HOH HOH . E 4 HOH A 17 417 15 HOH HOH . E 4 HOH A 18 418 53 HOH HOH . E 4 HOH A 19 419 2 HOH HOH . E 4 HOH A 20 420 54 HOH HOH . E 4 HOH A 21 421 5 HOH HOH . E 4 HOH A 22 422 20 HOH HOH . E 4 HOH A 23 423 1 HOH HOH . E 4 HOH A 24 424 30 HOH HOH . E 4 HOH A 25 425 50 HOH HOH . E 4 HOH A 26 426 31 HOH HOH . E 4 HOH A 27 427 11 HOH HOH . E 4 HOH A 28 428 36 HOH HOH . E 4 HOH A 29 429 4 HOH HOH . E 4 HOH A 30 430 13 HOH HOH . E 4 HOH A 31 431 41 HOH HOH . E 4 HOH A 32 432 8 HOH HOH . E 4 HOH A 33 433 27 HOH HOH . E 4 HOH A 34 434 25 HOH HOH . E 4 HOH A 35 435 6 HOH HOH . E 4 HOH A 36 436 59 HOH HOH . E 4 HOH A 37 437 45 HOH HOH . E 4 HOH A 38 438 24 HOH HOH . E 4 HOH A 39 439 26 HOH HOH . E 4 HOH A 40 440 38 HOH HOH . E 4 HOH A 41 441 67 HOH HOH . E 4 HOH A 42 442 56 HOH HOH . E 4 HOH A 43 443 60 HOH HOH . E 4 HOH A 44 444 3 HOH HOH . E 4 HOH A 45 445 64 HOH HOH . E 4 HOH A 46 446 79 HOH HOH . E 4 HOH A 47 447 65 HOH HOH . E 4 HOH A 48 448 69 HOH HOH . E 4 HOH A 49 449 71 HOH HOH . E 4 HOH A 50 450 28 HOH HOH . E 4 HOH A 51 451 57 HOH HOH . E 4 HOH A 52 452 46 HOH HOH . E 4 HOH A 53 453 76 HOH HOH . E 4 HOH A 54 454 39 HOH HOH . E 4 HOH A 55 455 18 HOH HOH . E 4 HOH A 56 456 10 HOH HOH . E 4 HOH A 57 457 58 HOH HOH . E 4 HOH A 58 458 66 HOH HOH . E 4 HOH A 59 459 78 HOH HOH . E 4 HOH A 60 460 49 HOH HOH . E 4 HOH A 61 461 55 HOH HOH . E 4 HOH A 62 462 68 HOH HOH . E 4 HOH A 63 463 61 HOH HOH . E 4 HOH A 64 464 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 WZX . . . D 3 -17.603 22.32 0.152 1 20.65 ? C13 WZX 303 A 1 HETATM 2 C C15 WZX . . . D 3 -19.959 22.166 0.397 1 20.46 ? C15 WZX 303 A 1 HETATM 3 C C17 WZX . . . D 3 -18.68 23.13 2.187 1 22.03 ? C17 WZX 303 A 1 HETATM 4 C C01 WZX . . . D 3 -23.092 26.979 6.203 1 31.53 ? C01 WZX 303 A 1 HETATM 5 C C02 WZX . . . D 3 -21.901 26.976 5.252 1 30.73 ? C02 WZX 303 A 1 HETATM 6 O O03 WZX . . . D 3 -21.337 25.659 5.22 1 28.2 ? O03 WZX 303 A 1 HETATM 7 C C04 WZX . . . D 3 -20.407 25.284 4.187 1 26.35 ? C04 WZX 303 A 1 HETATM 8 O O05 WZX . . . D 3 -20.234 25.972 3.207 1 27.14 ? O05 WZX 303 A 1 HETATM 9 C C06 WZX . . . D 3 -19.697 23.99 4.371 1 24.81 ? C06 WZX 303 A 1 HETATM 10 N N07 WZX . . . D 3 -18.573 23.76 3.459 1 23.33 ? N07 WZX 303 A 1 HETATM 11 C C08 WZX . . . D 3 -17.285 24.189 3.98 1 22 ? C08 WZX 303 A 1 HETATM 12 C C09 WZX . . . D 3 -16.18 23.859 3.031 1 21.4 ? C09 WZX 303 A 1 HETATM 13 O O10 WZX . . . D 3 -15.046 24.129 3.388 1 22.44 ? O10 WZX 303 A 1 HETATM 14 N N11 WZX . . . D 3 -16.333 23.275 1.856 1 20.85 ? N11 WZX 303 A 1 HETATM 15 C C12 WZX . . . D 3 -17.531 22.925 1.406 1 21.57 ? C12 WZX 303 A 1 HETATM 16 C C14 WZX . . . D 3 -18.83 21.949 -0.361 1 19.9 ? C14 WZX 303 A 1 HETATM 17 C C16 WZX . . . D 3 -19.9 22.736 1.665 1 20.84 ? C16 WZX 303 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #