data_8QV7
#
_model_server_result.job_id            G-CDniJJf1sjlvwahCvWlA 
_model_server_result.datetime_utc      '2024-11-15 09:36:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8qv7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":402}' 
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_entry.id    8QV7 
#
_exptl.entry_id    8QV7 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          120.75 
_cell.angle_gamma         90 
_cell.entry_id            8QV7 
_cell.length_a            181.285 
_cell.length_b            90.756 
_cell.length_c            132.774 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 8QV7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
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_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8QV7 
_atom_sites.fract_transf_matrix[1][1]    0.005516 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003282 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011019 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008764 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZIQ A 1 401 1 ZIQ LI2 . 
F 3 GOL A 1 402 2 GOL GOL . 
G 2 ZIQ B 1 401 4 ZIQ LI2 . 
H 3 GOL B 1 402 3 GOL GOL . 
I 2 ZIQ C 1 401 3 ZIQ LI2 . 
J 2 ZIQ D 1 401 2 ZIQ LI2 . 
K 4 HOH A 1 501 40 HOH HOH . 
K 4 HOH A 2 502 64 HOH HOH . 
K 4 HOH A 3 503 7 HOH HOH . 
K 4 HOH A 4 504 84 HOH HOH . 
K 4 HOH A 5 505 25 HOH HOH . 
K 4 HOH A 6 506 30 HOH HOH . 
K 4 HOH A 7 507 48 HOH HOH . 
K 4 HOH A 8 508 16 HOH HOH . 
K 4 HOH A 9 509 19 HOH HOH . 
L 4 HOH B 1 501 26 HOH HOH . 
L 4 HOH B 2 502 13 HOH HOH . 
L 4 HOH B 3 503 33 HOH HOH . 
L 4 HOH B 4 504 61 HOH HOH . 
L 4 HOH B 5 505 27 HOH HOH . 
L 4 HOH B 6 506 23 HOH HOH . 
L 4 HOH B 7 507 28 HOH HOH . 
L 4 HOH B 8 508 77 HOH HOH . 
L 4 HOH B 9 509 63 HOH HOH . 
L 4 HOH B 10 510 5 HOH HOH . 
M 4 HOH C 1 501 45 HOH HOH . 
M 4 HOH C 2 502 50 HOH HOH . 
M 4 HOH C 3 503 75 HOH HOH . 
M 4 HOH C 4 504 20 HOH HOH . 
M 4 HOH C 5 505 73 HOH HOH . 
M 4 HOH C 6 506 14 HOH HOH . 
M 4 HOH C 7 507 17 HOH HOH . 
M 4 HOH C 8 508 81 HOH HOH . 
N 4 HOH D 1 501 15 HOH HOH . 
N 4 HOH D 2 502 70 HOH HOH . 
N 4 HOH D 3 503 38 HOH HOH . 
N 4 HOH D 4 504 83 HOH HOH . 
N 4 HOH D 5 505 80 HOH HOH . 
N 4 HOH D 6 506 12 HOH HOH . 
N 4 HOH D 7 507 85 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 3 -76.744 -12.674 19.942 1 17.6 ? C1 GOL 402 B 1 
HETATM 2 O O1 GOL . . . H 3 -77.509 -11.835 19.108 1 18.08 ? O1 GOL 402 B 1 
HETATM 3 C C2 GOL . . . H 3 -75.626 -11.875 20.537 1 17.63 ? C2 GOL 402 B 1 
HETATM 4 O O2 GOL . . . H 3 -76.031 -11.427 21.818 1 17.6 ? O2 GOL 402 B 1 
HETATM 5 C C3 GOL . . . H 3 -74.362 -12.674 20.666 1 18.6 ? C3 GOL 402 B 1 
HETATM 6 O O3 GOL . . . H 3 -73.906 -13.099 19.388 1 19.69 ? O3 GOL 402 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
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