data_8QV9 # _model_server_result.job_id dY61ToDQ-GaMYcGdGg1Mvw _model_server_result.datetime_utc '2024-10-19 01:52:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qv9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 8QV9 # _exptl.entry_id 8QV9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8QV9 _cell.length_a 90.327 _cell.length_b 90.327 _cell.length_c 56.509 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QV9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 y,-x+y,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 0 6 'crystal symmetry operation' 6_555 x-y,x,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 A SG CYS 45 A CYS 45 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? disulf ? disulf2 A SG CYS 198 A CYS 198 1_555 A SG CYS 218 A CYS 218 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.098 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8QV9 _atom_sites.fract_transf_matrix[1][1] 0.011071 _atom_sites.fract_transf_matrix[1][2] 0.006392 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WZL A 1 301 1 WZL LIG . C 3 EDO A 1 302 1 EDO EDO . D 3 EDO A 1 303 2 EDO EDO . E 3 EDO A 1 304 3 EDO EDO . F 4 HOH A 1 401 144 HOH HOH . F 4 HOH A 2 402 209 HOH HOH . F 4 HOH A 3 403 243 HOH HOH . F 4 HOH A 4 404 168 HOH HOH . F 4 HOH A 5 405 164 HOH HOH . F 4 HOH A 6 406 146 HOH HOH . F 4 HOH A 7 407 142 HOH HOH . F 4 HOH A 8 408 156 HOH HOH . F 4 HOH A 9 409 92 HOH HOH . F 4 HOH A 10 410 145 HOH HOH . F 4 HOH A 11 411 187 HOH HOH . F 4 HOH A 12 412 94 HOH HOH . F 4 HOH A 13 413 64 HOH HOH . F 4 HOH A 14 414 167 HOH HOH . F 4 HOH A 15 415 157 HOH HOH . F 4 HOH A 16 416 150 HOH HOH . F 4 HOH A 17 417 6 HOH HOH . F 4 HOH A 18 418 99 HOH HOH . F 4 HOH A 19 419 152 HOH HOH . F 4 HOH A 20 420 72 HOH HOH . F 4 HOH A 21 421 179 HOH HOH . F 4 HOH A 22 422 97 HOH HOH . F 4 HOH A 23 423 174 HOH HOH . F 4 HOH A 24 424 70 HOH HOH . F 4 HOH A 25 425 52 HOH HOH . F 4 HOH A 26 426 227 HOH HOH . F 4 HOH A 27 427 140 HOH HOH . F 4 HOH A 28 428 56 HOH HOH . F 4 HOH A 29 429 162 HOH HOH . F 4 HOH A 30 430 13 HOH HOH . F 4 HOH A 31 431 95 HOH HOH . F 4 HOH A 32 432 28 HOH HOH . F 4 HOH A 33 433 53 HOH HOH . F 4 HOH A 34 434 96 HOH HOH . F 4 HOH A 35 435 29 HOH HOH . F 4 HOH A 36 436 80 HOH HOH . F 4 HOH A 37 437 37 HOH HOH . F 4 HOH A 38 438 82 HOH HOH . F 4 HOH A 39 439 154 HOH HOH . F 4 HOH A 40 440 215 HOH HOH . F 4 HOH A 41 441 234 HOH HOH . F 4 HOH A 42 442 23 HOH HOH . F 4 HOH A 43 443 173 HOH HOH . F 4 HOH A 44 444 93 HOH HOH . F 4 HOH A 45 445 77 HOH HOH . F 4 HOH A 46 446 58 HOH HOH . F 4 HOH A 47 447 205 HOH HOH . F 4 HOH A 48 448 116 HOH HOH . F 4 HOH A 49 449 25 HOH HOH . F 4 HOH A 50 450 17 HOH HOH . F 4 HOH A 51 451 221 HOH HOH . F 4 HOH A 52 452 175 HOH HOH . F 4 HOH A 53 453 118 HOH HOH . F 4 HOH A 54 454 12 HOH HOH . F 4 HOH A 55 455 235 HOH HOH . F 4 HOH A 56 456 21 HOH HOH . F 4 HOH A 57 457 3 HOH HOH . F 4 HOH A 58 458 65 HOH HOH . F 4 HOH A 59 459 59 HOH HOH . F 4 HOH A 60 460 210 HOH HOH . F 4 HOH A 61 461 87 HOH HOH . F 4 HOH A 62 462 39 HOH HOH . F 4 HOH A 63 463 32 HOH HOH . F 4 HOH A 64 464 184 HOH HOH . F 4 HOH A 65 465 75 HOH HOH . F 4 HOH A 66 466 5 HOH HOH . F 4 HOH A 67 467 125 HOH HOH . F 4 HOH A 68 468 2 HOH HOH . F 4 HOH A 69 469 22 HOH HOH . F 4 HOH A 70 470 138 HOH HOH . F 4 HOH A 71 471 55 HOH HOH . F 4 HOH A 72 472 108 HOH HOH . F 4 HOH A 73 473 15 HOH HOH . F 4 HOH A 74 474 14 HOH HOH . F 4 HOH A 75 475 196 HOH HOH . F 4 HOH A 76 476 47 HOH HOH . F 4 HOH A 77 477 44 HOH HOH . F 4 HOH A 78 478 20 HOH HOH . F 4 HOH A 79 479 85 HOH HOH . F 4 HOH A 80 480 110 HOH HOH . F 4 HOH A 81 481 90 HOH HOH . F 4 HOH A 82 482 63 HOH HOH . F 4 HOH A 83 483 178 HOH HOH . F 4 HOH A 84 484 69 HOH HOH . F 4 HOH A 85 485 51 HOH HOH . F 4 HOH A 86 486 106 HOH HOH . F 4 HOH A 87 487 16 HOH HOH . F 4 HOH A 88 488 115 HOH HOH . F 4 HOH A 89 489 67 HOH HOH . F 4 HOH A 90 490 10 HOH HOH . F 4 HOH A 91 491 126 HOH HOH . F 4 HOH A 92 492 49 HOH HOH . F 4 HOH A 93 493 129 HOH HOH . F 4 HOH A 94 494 74 HOH HOH . F 4 HOH A 95 495 86 HOH HOH . F 4 HOH A 96 496 57 HOH HOH . F 4 HOH A 97 497 27 HOH HOH . F 4 HOH A 98 498 79 HOH HOH . F 4 HOH A 99 499 8 HOH HOH . F 4 HOH A 100 500 191 HOH HOH . F 4 HOH A 101 501 35 HOH HOH . F 4 HOH A 102 502 136 HOH HOH . F 4 HOH A 103 503 26 HOH HOH . F 4 HOH A 104 504 169 HOH HOH . F 4 HOH A 105 505 232 HOH HOH . F 4 HOH A 106 506 244 HOH HOH . F 4 HOH A 107 507 41 HOH HOH . F 4 HOH A 108 508 62 HOH HOH . F 4 HOH A 109 509 9 HOH HOH . F 4 HOH A 110 510 224 HOH HOH . F 4 HOH A 111 511 216 HOH HOH . F 4 HOH A 112 512 84 HOH HOH . F 4 HOH A 113 513 68 HOH HOH . F 4 HOH A 114 514 128 HOH HOH . F 4 HOH A 115 515 42 HOH HOH . F 4 HOH A 116 516 31 HOH HOH . F 4 HOH A 117 517 24 HOH HOH . F 4 HOH A 118 518 163 HOH HOH . F 4 HOH A 119 519 46 HOH HOH . F 4 HOH A 120 520 242 HOH HOH . F 4 HOH A 121 521 81 HOH HOH . F 4 HOH A 122 522 4 HOH HOH . F 4 HOH A 123 523 183 HOH HOH . F 4 HOH A 124 524 139 HOH HOH . F 4 HOH A 125 525 7 HOH HOH . F 4 HOH A 126 526 66 HOH HOH . F 4 HOH A 127 527 40 HOH HOH . F 4 HOH A 128 528 149 HOH HOH . F 4 HOH A 129 529 54 HOH HOH . F 4 HOH A 130 530 117 HOH HOH . F 4 HOH A 131 531 34 HOH HOH . F 4 HOH A 132 532 43 HOH HOH . F 4 HOH A 133 533 204 HOH HOH . F 4 HOH A 134 534 19 HOH HOH . F 4 HOH A 135 535 89 HOH HOH . F 4 HOH A 136 536 71 HOH HOH . F 4 HOH A 137 537 18 HOH HOH . F 4 HOH A 138 538 1 HOH HOH . F 4 HOH A 139 539 143 HOH HOH . F 4 HOH A 140 540 135 HOH HOH . F 4 HOH A 141 541 206 HOH HOH . F 4 HOH A 142 542 130 HOH HOH . F 4 HOH A 143 543 120 HOH HOH . F 4 HOH A 144 544 60 HOH HOH . F 4 HOH A 145 545 76 HOH HOH . F 4 HOH A 146 546 213 HOH HOH . F 4 HOH A 147 547 45 HOH HOH . F 4 HOH A 148 548 124 HOH HOH . F 4 HOH A 149 549 137 HOH HOH . F 4 HOH A 150 550 33 HOH HOH . F 4 HOH A 151 551 180 HOH HOH . F 4 HOH A 152 552 11 HOH HOH . F 4 HOH A 153 553 207 HOH HOH . F 4 HOH A 154 554 201 HOH HOH . F 4 HOH A 155 555 241 HOH HOH . F 4 HOH A 156 556 229 HOH HOH . F 4 HOH A 157 557 158 HOH HOH . F 4 HOH A 158 558 225 HOH HOH . F 4 HOH A 159 559 203 HOH HOH . F 4 HOH A 160 560 245 HOH HOH . F 4 HOH A 161 561 202 HOH HOH . F 4 HOH A 162 562 182 HOH HOH . F 4 HOH A 163 563 123 HOH HOH . F 4 HOH A 164 564 113 HOH HOH . F 4 HOH A 165 565 214 HOH HOH . F 4 HOH A 166 566 218 HOH HOH . F 4 HOH A 167 567 177 HOH HOH . F 4 HOH A 168 568 220 HOH HOH . F 4 HOH A 169 569 73 HOH HOH . F 4 HOH A 170 570 155 HOH HOH . F 4 HOH A 171 571 148 HOH HOH . F 4 HOH A 172 572 101 HOH HOH . F 4 HOH A 173 573 141 HOH HOH . F 4 HOH A 174 574 226 HOH HOH . F 4 HOH A 175 575 133 HOH HOH . F 4 HOH A 176 576 171 HOH HOH . F 4 HOH A 177 577 107 HOH HOH . F 4 HOH A 178 578 103 HOH HOH . F 4 HOH A 179 579 100 HOH HOH . F 4 HOH A 180 580 111 HOH HOH . F 4 HOH A 181 581 198 HOH HOH . F 4 HOH A 182 582 61 HOH HOH . F 4 HOH A 183 583 104 HOH HOH . F 4 HOH A 184 584 91 HOH HOH . F 4 HOH A 185 585 170 HOH HOH . F 4 HOH A 186 586 147 HOH HOH . F 4 HOH A 187 587 98 HOH HOH . F 4 HOH A 188 588 102 HOH HOH . F 4 HOH A 189 589 228 HOH HOH . F 4 HOH A 190 590 30 HOH HOH . F 4 HOH A 191 591 36 HOH HOH . F 4 HOH A 192 592 131 HOH HOH . F 4 HOH A 193 593 50 HOH HOH . F 4 HOH A 194 594 165 HOH HOH . F 4 HOH A 195 595 230 HOH HOH . F 4 HOH A 196 596 208 HOH HOH . F 4 HOH A 197 597 88 HOH HOH . F 4 HOH A 198 598 134 HOH HOH . F 4 HOH A 199 599 121 HOH HOH . F 4 HOH A 200 600 237 HOH HOH . F 4 HOH A 201 601 219 HOH HOH . F 4 HOH A 202 602 199 HOH HOH . F 4 HOH A 203 603 122 HOH HOH . F 4 HOH A 204 604 192 HOH HOH . F 4 HOH A 205 605 197 HOH HOH . F 4 HOH A 206 606 233 HOH HOH . F 4 HOH A 207 607 190 HOH HOH . F 4 HOH A 208 608 112 HOH HOH . F 4 HOH A 209 609 48 HOH HOH . F 4 HOH A 210 610 161 HOH HOH . F 4 HOH A 211 611 114 HOH HOH . F 4 HOH A 212 612 153 HOH HOH . F 4 HOH A 213 613 78 HOH HOH . F 4 HOH A 214 614 160 HOH HOH . F 4 HOH A 215 615 181 HOH HOH . F 4 HOH A 216 616 109 HOH HOH . F 4 HOH A 217 617 105 HOH HOH . F 4 HOH A 218 618 38 HOH HOH . F 4 HOH A 219 619 193 HOH HOH . F 4 HOH A 220 620 127 HOH HOH . F 4 HOH A 221 621 166 HOH HOH . F 4 HOH A 222 622 83 HOH HOH . F 4 HOH A 223 623 132 HOH HOH . F 4 HOH A 224 624 185 HOH HOH . F 4 HOH A 225 625 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 -33.13 -17.372 11.547 1 31.62 ? C1 EDO 303 A 1 HETATM 2 O O1 EDO . . . D 3 -31.84 -16.774 11.482 1 34.74 ? O1 EDO 303 A 1 HETATM 3 C C2 EDO . . . D 3 -33.362 -17.477 10.085 1 33.11 ? C2 EDO 303 A 1 HETATM 4 O O2 EDO . . . D 3 -32.216 -18.076 9.422 1 38.57 ? O2 EDO 303 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #