data_8QVF # _model_server_result.job_id 33mekKUVpCcDqZS32Q2vAQ _model_server_result.datetime_utc '2024-10-27 22:25:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qvf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8QVF # _exptl.entry_id 8QVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 355.495 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(1-adamantyl)-3-(1-methylsulfonylpiperidin-4-yl)urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8QVF _cell.length_a 95.41 _cell.length_b 95.41 _cell.length_c 244.29 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -47.705 82.627484 -40.715 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H29 N3 O3 S' _chem_comp.formula_weight 355.495 _chem_comp.id XQ9 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(1-adamantyl)-3-(1-methylsulfonylpiperidin-4-yl)urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 S2 XQ9 sing 376 n n S2 O3 XQ9 doub 377 n n S2 O4 XQ9 doub 378 n n S2 N5 XQ9 sing 379 n n N5 C6 XQ9 sing 380 n n N5 C10 XQ9 sing 381 n n C6 C7 XQ9 sing 382 n n C7 C8 XQ9 sing 383 n n C8 C9 XQ9 sing 384 n n C8 N11 XQ9 sing 385 n n C9 C10 XQ9 sing 386 n n N11 C12 XQ9 sing 387 n n C12 O13 XQ9 doub 388 n n C12 N14 XQ9 sing 389 n n N14 C15 XQ9 sing 390 n n C15 C16 XQ9 sing 391 n n C15 C20 XQ9 sing 392 n n C15 C24 XQ9 sing 393 n n C16 C17 XQ9 sing 394 n n C17 C18 XQ9 sing 395 n n C17 C23 XQ9 sing 396 n n C18 C19 XQ9 sing 397 n n C19 C20 XQ9 sing 398 n n C19 C21 XQ9 sing 399 n n C21 C22 XQ9 sing 400 n n C22 C23 XQ9 sing 401 n n C22 C24 XQ9 sing 402 n n C1 H11C XQ9 sing 403 n n C1 H12C XQ9 sing 404 n n C1 H13C XQ9 sing 405 n n C6 H61C XQ9 sing 406 n n C6 H62C XQ9 sing 407 n n C10 H101 XQ9 sing 408 n n C10 H102 XQ9 sing 409 n n C7 H71C XQ9 sing 410 n n C7 H72C XQ9 sing 411 n n C8 H8 XQ9 sing 412 n n C9 H91C XQ9 sing 413 n n C9 H92C XQ9 sing 414 n n N11 H11 XQ9 sing 415 n n N14 H14 XQ9 sing 416 n n C16 H161 XQ9 sing 417 n n C16 H162 XQ9 sing 418 n n C20 H201 XQ9 sing 419 n n C20 H202 XQ9 sing 420 n n C24 H241 XQ9 sing 421 n n C24 H242 XQ9 sing 422 n n C17 H17 XQ9 sing 423 n n C18 H181 XQ9 sing 424 n n C18 H182 XQ9 sing 425 n n C23 H231 XQ9 sing 426 n n C23 H232 XQ9 sing 427 n n C19 H19 XQ9 sing 428 n n C21 H211 XQ9 sing 429 n n C21 H212 XQ9 sing 430 n n C22 H22 XQ9 sing 431 n n # _atom_sites.entry_id 8QVF _atom_sites.fract_transf_matrix[1][1] 0.010481 _atom_sites.fract_transf_matrix[1][2] 0.006051 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012103 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XQ9 A 1 601 601 XQ9 UNL . C 3 HOH A 1 701 45 HOH HOH . C 3 HOH A 2 702 57 HOH HOH . C 3 HOH A 3 703 97 HOH HOH . C 3 HOH A 4 704 16 HOH HOH . C 3 HOH A 5 705 6 HOH HOH . C 3 HOH A 6 706 14 HOH HOH . C 3 HOH A 7 707 64 HOH HOH . C 3 HOH A 8 708 98 HOH HOH . C 3 HOH A 9 709 49 HOH HOH . C 3 HOH A 10 710 74 HOH HOH . C 3 HOH A 11 711 15 HOH HOH . C 3 HOH A 12 712 3 HOH HOH . C 3 HOH A 13 713 11 HOH HOH . C 3 HOH A 14 714 4 HOH HOH . C 3 HOH A 15 715 46 HOH HOH . C 3 HOH A 16 716 10 HOH HOH . C 3 HOH A 17 717 8 HOH HOH . C 3 HOH A 18 718 5 HOH HOH . C 3 HOH A 19 719 7 HOH HOH . C 3 HOH A 20 720 96 HOH HOH . C 3 HOH A 21 721 13 HOH HOH . C 3 HOH A 22 722 87 HOH HOH . C 3 HOH A 23 723 83 HOH HOH . C 3 HOH A 24 724 32 HOH HOH . C 3 HOH A 25 725 69 HOH HOH . C 3 HOH A 26 726 30 HOH HOH . C 3 HOH A 27 727 71 HOH HOH . C 3 HOH A 28 728 61 HOH HOH . C 3 HOH A 29 729 9 HOH HOH . C 3 HOH A 30 730 47 HOH HOH . C 3 HOH A 31 731 37 HOH HOH . C 3 HOH A 32 732 70 HOH HOH . C 3 HOH A 33 733 21 HOH HOH . C 3 HOH A 34 734 35 HOH HOH . C 3 HOH A 35 735 27 HOH HOH . C 3 HOH A 36 736 31 HOH HOH . C 3 HOH A 37 737 2 HOH HOH . C 3 HOH A 38 738 1 HOH HOH . C 3 HOH A 39 739 19 HOH HOH . C 3 HOH A 40 740 65 HOH HOH . C 3 HOH A 41 741 26 HOH HOH . C 3 HOH A 42 742 79 HOH HOH . C 3 HOH A 43 743 22 HOH HOH . C 3 HOH A 44 744 52 HOH HOH . C 3 HOH A 45 745 54 HOH HOH . C 3 HOH A 46 746 81 HOH HOH . C 3 HOH A 47 747 56 HOH HOH . C 3 HOH A 48 748 53 HOH HOH . C 3 HOH A 49 749 73 HOH HOH . C 3 HOH A 50 750 62 HOH HOH . C 3 HOH A 51 751 85 HOH HOH . C 3 HOH A 52 752 44 HOH HOH . C 3 HOH A 53 753 24 HOH HOH . C 3 HOH A 54 754 82 HOH HOH . C 3 HOH A 55 755 86 HOH HOH . C 3 HOH A 56 756 58 HOH HOH . C 3 HOH A 57 757 20 HOH HOH . C 3 HOH A 58 758 72 HOH HOH . C 3 HOH A 59 759 90 HOH HOH . C 3 HOH A 60 760 92 HOH HOH . C 3 HOH A 61 761 60 HOH HOH . C 3 HOH A 62 762 34 HOH HOH . C 3 HOH A 63 763 23 HOH HOH . C 3 HOH A 64 764 66 HOH HOH . C 3 HOH A 65 765 88 HOH HOH . C 3 HOH A 66 766 29 HOH HOH . C 3 HOH A 67 767 67 HOH HOH . C 3 HOH A 68 768 25 HOH HOH . C 3 HOH A 69 769 68 HOH HOH . C 3 HOH A 70 770 40 HOH HOH . C 3 HOH A 71 771 80 HOH HOH . C 3 HOH A 72 772 17 HOH HOH . C 3 HOH A 73 773 33 HOH HOH . C 3 HOH A 74 774 50 HOH HOH . C 3 HOH A 75 775 77 HOH HOH . C 3 HOH A 76 776 59 HOH HOH . C 3 HOH A 77 777 41 HOH HOH . C 3 HOH A 78 778 38 HOH HOH . C 3 HOH A 79 779 28 HOH HOH . C 3 HOH A 80 780 84 HOH HOH . C 3 HOH A 81 781 36 HOH HOH . C 3 HOH A 82 782 18 HOH HOH . C 3 HOH A 83 783 89 HOH HOH . C 3 HOH A 84 784 12 HOH HOH . C 3 HOH A 85 785 55 HOH HOH . C 3 HOH A 86 786 76 HOH HOH . C 3 HOH A 87 787 39 HOH HOH . C 3 HOH A 88 788 94 HOH HOH . C 3 HOH A 89 789 42 HOH HOH . C 3 HOH A 90 790 75 HOH HOH . C 3 HOH A 91 791 63 HOH HOH . C 3 HOH A 92 792 48 HOH HOH . C 3 HOH A 93 793 51 HOH HOH . C 3 HOH A 94 794 93 HOH HOH . C 3 HOH A 95 795 78 HOH HOH . C 3 HOH A 96 796 95 HOH HOH . C 3 HOH A 97 797 43 HOH HOH . C 3 HOH A 98 798 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XQ9 . . . B 2 -13.179 12.056 -22.294 1 64.79 ? C1 XQ9 601 A 1 HETATM 2 S S2 XQ9 . . . B 2 -12.534 12.567 -20.724 1 65.05 ? S2 XQ9 601 A 1 HETATM 3 O O3 XQ9 . . . B 2 -11.512 11.616 -20.319 1 65.08 ? O3 XQ9 601 A 1 HETATM 4 O O4 XQ9 . . . B 2 -12.258 13.991 -20.775 1 65.67 ? O4 XQ9 601 A 1 HETATM 5 N N5 XQ9 . . . B 2 -13.948 12.361 -19.772 1 63.76 ? N5 XQ9 601 A 1 HETATM 6 C C6 XQ9 . . . B 2 -14.509 13.666 -19.27 1 62.83 ? C6 XQ9 601 A 1 HETATM 7 C C7 XQ9 . . . B 2 -15.782 13.46 -18.453 1 62.03 ? C7 XQ9 601 A 1 HETATM 8 C C8 XQ9 . . . B 2 -15.555 12.434 -17.338 1 61.36 ? C8 XQ9 601 A 1 HETATM 9 C C9 XQ9 . . . B 2 -15.115 11.094 -17.932 1 62.22 ? C9 XQ9 601 A 1 HETATM 10 C C10 XQ9 . . . B 2 -13.837 11.25 -18.762 1 62.99 ? C10 XQ9 601 A 1 HETATM 11 N N11 XQ9 . . . B 2 -16.742 12.399 -16.536 1 59.96 ? N11 XQ9 601 A 1 HETATM 12 C C12 XQ9 . . . B 2 -17.216 11.365 -15.801 1 58.8 ? C12 XQ9 601 A 1 HETATM 13 O O13 XQ9 . . . B 2 -17.439 10.278 -16.292 1 58.55 ? O13 XQ9 601 A 1 HETATM 14 N N14 XQ9 . . . B 2 -17.493 11.734 -14.51 1 58.53 ? N14 XQ9 601 A 1 HETATM 15 C C15 XQ9 . . . B 2 -18.225 10.919 -13.559 1 58.56 ? C15 XQ9 601 A 1 HETATM 16 C C16 XQ9 . . . B 2 -17.287 9.791 -13.006 1 58.47 ? C16 XQ9 601 A 1 HETATM 17 C C17 XQ9 . . . B 2 -18.018 8.973 -11.901 1 58.44 ? C17 XQ9 601 A 1 HETATM 18 C C18 XQ9 . . . B 2 -19.288 8.325 -12.535 1 58.66 ? C18 XQ9 601 A 1 HETATM 19 C C19 XQ9 . . . B 2 -20.263 9.411 -13.086 1 58.73 ? C19 XQ9 601 A 1 HETATM 20 C C20 XQ9 . . . B 2 -19.517 10.257 -14.161 1 58.79 ? C20 XQ9 601 A 1 HETATM 21 C C21 XQ9 . . . B 2 -20.661 10.38 -11.93 1 58.39 ? C21 XQ9 601 A 1 HETATM 22 C C22 XQ9 . . . B 2 -19.41 11.046 -11.291 1 58.17 ? C22 XQ9 601 A 1 HETATM 23 C C23 XQ9 . . . B 2 -18.446 9.948 -10.758 1 58.18 ? C23 XQ9 601 A 1 HETATM 24 C C24 XQ9 . . . B 2 -18.673 11.856 -12.392 1 58.23 ? C24 XQ9 601 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 24 #