data_8QVG # _model_server_result.job_id ustK1kecfbSoHfkOYJATeA _model_server_result.datetime_utc '2024-11-25 03:40:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qvg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8QVG # _exptl.entry_id 8QVG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 304.386 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3,3-DIPHENYLPROPYL)PYRROLIDINE-1-CARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8QVG _cell.length_a 93.87 _cell.length_b 93.87 _cell.length_c 246.37 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QVG _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 46.935 -81.293805 -41.061667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H20 N2 O' _chem_comp.formula_weight 304.386 _chem_comp.id 6N8 _chem_comp.mon_nstd_flag . _chem_comp.name N-(3,3-DIPHENYLPROPYL)PYRROLIDINE-1-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 6N8 sing 1 n y C1 C6 6N8 doub 2 n y C21 C20 6N8 sing 3 n y C21 C22 6N8 doub 4 n y C2 C3 6N8 doub 5 n y C6 C5 6N8 sing 6 n y C20 C19 6N8 doub 7 n y C22 C23 6N8 sing 8 n y C3 C4 6N8 sing 9 n y C5 C4 6N8 doub 10 n y C19 C18 6N8 sing 11 n y C23 C18 6N8 doub 12 n y C4 C7 6N8 sing 13 n n C18 C7 6N8 sing 14 n n C11 N13 6N8 sing 15 n n C11 N10 6N8 sing 16 n n C11 O12 6N8 doub 17 n n C15 C16 6N8 sing 18 n y C15 C14 6N8 doub 19 n y C16 C17 6N8 doub 20 n y C14 N13 6N8 sing 21 n y C17 N13 6N8 sing 22 n y C8 C9 6N8 sing 23 n n C8 C7 6N8 sing 24 n n C9 N10 6N8 sing 25 n n C1 H1 6N8 sing 26 n n C2 H2 6N8 sing 27 n n C6 H6 6N8 sing 28 n n C21 H21 6N8 sing 29 n n C20 H20 6N8 sing 30 n n C22 H22 6N8 sing 31 n n C3 H3 6N8 sing 32 n n C5 H5 6N8 sing 33 n n C19 H19 6N8 sing 34 n n C23 H23 6N8 sing 35 n n C7 H7 6N8 sing 36 n n N10 H10 6N8 sing 37 n n C15 H15 6N8 sing 38 n n C16 H16 6N8 sing 39 n n C14 H14 6N8 sing 40 n n C17 H17 6N8 sing 41 n n C8 H81C 6N8 sing 42 n n C8 H82C 6N8 sing 43 n n C9 H91C 6N8 sing 44 n n C9 H92C 6N8 sing 45 n n # _atom_sites.entry_id 8QVG _atom_sites.fract_transf_matrix[1][1] 0.010653 _atom_sites.fract_transf_matrix[1][2] 0.006151 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012301 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004059 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6N8 A 1 601 601 6N8 UNL . C 3 HOH A 1 701 88 HOH HOH . C 3 HOH A 2 702 143 HOH HOH . C 3 HOH A 3 703 188 HOH HOH . C 3 HOH A 4 704 3 HOH HOH . C 3 HOH A 5 705 156 HOH HOH . C 3 HOH A 6 706 27 HOH HOH . C 3 HOH A 7 707 155 HOH HOH . C 3 HOH A 8 708 10 HOH HOH . C 3 HOH A 9 709 139 HOH HOH . C 3 HOH A 10 710 43 HOH HOH . C 3 HOH A 11 711 79 HOH HOH . C 3 HOH A 12 712 14 HOH HOH . C 3 HOH A 13 713 163 HOH HOH . C 3 HOH A 14 714 157 HOH HOH . C 3 HOH A 15 715 99 HOH HOH . C 3 HOH A 16 716 42 HOH HOH . C 3 HOH A 17 717 2 HOH HOH . C 3 HOH A 18 718 140 HOH HOH . C 3 HOH A 19 719 123 HOH HOH . C 3 HOH A 20 720 160 HOH HOH . C 3 HOH A 21 721 64 HOH HOH . C 3 HOH A 22 722 130 HOH HOH . C 3 HOH A 23 723 65 HOH HOH . C 3 HOH A 24 724 15 HOH HOH . C 3 HOH A 25 725 106 HOH HOH . C 3 HOH A 26 726 194 HOH HOH . C 3 HOH A 27 727 26 HOH HOH . C 3 HOH A 28 728 159 HOH HOH . C 3 HOH A 29 729 138 HOH HOH . C 3 HOH A 30 730 29 HOH HOH . C 3 HOH A 31 731 110 HOH HOH . C 3 HOH A 32 732 45 HOH HOH . C 3 HOH A 33 733 187 HOH HOH . C 3 HOH A 34 734 180 HOH HOH . C 3 HOH A 35 735 192 HOH HOH . C 3 HOH A 36 736 195 HOH HOH . C 3 HOH A 37 737 152 HOH HOH . C 3 HOH A 38 738 149 HOH HOH . C 3 HOH A 39 739 104 HOH HOH . C 3 HOH A 40 740 5 HOH HOH . C 3 HOH A 41 741 107 HOH HOH . C 3 HOH A 42 742 21 HOH HOH . C 3 HOH A 43 743 89 HOH HOH . C 3 HOH A 44 744 189 HOH HOH . C 3 HOH A 45 745 57 HOH HOH . C 3 HOH A 46 746 61 HOH HOH . C 3 HOH A 47 747 125 HOH HOH . C 3 HOH A 48 748 84 HOH HOH . C 3 HOH A 49 749 13 HOH HOH . C 3 HOH A 50 750 178 HOH HOH . C 3 HOH A 51 751 1 HOH HOH . C 3 HOH A 52 752 11 HOH HOH . C 3 HOH A 53 753 176 HOH HOH . C 3 HOH A 54 754 190 HOH HOH . C 3 HOH A 55 755 151 HOH HOH . C 3 HOH A 56 756 37 HOH HOH . C 3 HOH A 57 757 164 HOH HOH . C 3 HOH A 58 758 52 HOH HOH . C 3 HOH A 59 759 82 HOH HOH . C 3 HOH A 60 760 196 HOH HOH . C 3 HOH A 61 761 83 HOH HOH . C 3 HOH A 62 762 78 HOH HOH . C 3 HOH A 63 763 19 HOH HOH . C 3 HOH A 64 764 112 HOH HOH . C 3 HOH A 65 765 46 HOH HOH . C 3 HOH A 66 766 131 HOH HOH . C 3 HOH A 67 767 50 HOH HOH . C 3 HOH A 68 768 86 HOH HOH . C 3 HOH A 69 769 167 HOH HOH . C 3 HOH A 70 770 186 HOH HOH . C 3 HOH A 71 771 90 HOH HOH . C 3 HOH A 72 772 69 HOH HOH . C 3 HOH A 73 773 41 HOH HOH . C 3 HOH A 74 774 8 HOH HOH . C 3 HOH A 75 775 16 HOH HOH . C 3 HOH A 76 776 39 HOH HOH . C 3 HOH A 77 777 141 HOH HOH . C 3 HOH A 78 778 185 HOH HOH . C 3 HOH A 79 779 47 HOH HOH . C 3 HOH A 80 780 134 HOH HOH . C 3 HOH A 81 781 51 HOH HOH . C 3 HOH A 82 782 118 HOH HOH . C 3 HOH A 83 783 60 HOH HOH . C 3 HOH A 84 784 184 HOH HOH . C 3 HOH A 85 785 177 HOH HOH . C 3 HOH A 86 786 38 HOH HOH . C 3 HOH A 87 787 17 HOH HOH . C 3 HOH A 88 788 162 HOH HOH . C 3 HOH A 89 789 76 HOH HOH . C 3 HOH A 90 790 12 HOH HOH . C 3 HOH A 91 791 150 HOH HOH . C 3 HOH A 92 792 122 HOH HOH . C 3 HOH A 93 793 22 HOH HOH . C 3 HOH A 94 794 147 HOH HOH . C 3 HOH A 95 795 59 HOH HOH . C 3 HOH A 96 796 25 HOH HOH . C 3 HOH A 97 797 146 HOH HOH . C 3 HOH A 98 798 119 HOH HOH . C 3 HOH A 99 799 80 HOH HOH . C 3 HOH A 100 800 56 HOH HOH . C 3 HOH A 101 801 117 HOH HOH . C 3 HOH A 102 802 7 HOH HOH . C 3 HOH A 103 803 48 HOH HOH . C 3 HOH A 104 804 75 HOH HOH . C 3 HOH A 105 805 121 HOH HOH . C 3 HOH A 106 806 183 HOH HOH . C 3 HOH A 107 807 181 HOH HOH . C 3 HOH A 108 808 197 HOH HOH . C 3 HOH A 109 809 129 HOH HOH . C 3 HOH A 110 810 165 HOH HOH . C 3 HOH A 111 811 101 HOH HOH . C 3 HOH A 112 812 24 HOH HOH . C 3 HOH A 113 813 135 HOH HOH . C 3 HOH A 114 814 132 HOH HOH . C 3 HOH A 115 815 111 HOH HOH . C 3 HOH A 116 816 18 HOH HOH . C 3 HOH A 117 817 72 HOH HOH . C 3 HOH A 118 818 23 HOH HOH . C 3 HOH A 119 819 35 HOH HOH . C 3 HOH A 120 820 31 HOH HOH . C 3 HOH A 121 821 40 HOH HOH . C 3 HOH A 122 822 44 HOH HOH . C 3 HOH A 123 823 128 HOH HOH . C 3 HOH A 124 824 55 HOH HOH . C 3 HOH A 125 825 33 HOH HOH . C 3 HOH A 126 826 68 HOH HOH . C 3 HOH A 127 827 94 HOH HOH . C 3 HOH A 128 828 9 HOH HOH . C 3 HOH A 129 829 28 HOH HOH . C 3 HOH A 130 830 36 HOH HOH . C 3 HOH A 131 831 30 HOH HOH . C 3 HOH A 132 832 63 HOH HOH . C 3 HOH A 133 833 71 HOH HOH . C 3 HOH A 134 834 113 HOH HOH . C 3 HOH A 135 835 4 HOH HOH . C 3 HOH A 136 836 105 HOH HOH . C 3 HOH A 137 837 77 HOH HOH . C 3 HOH A 138 838 120 HOH HOH . C 3 HOH A 139 839 34 HOH HOH . C 3 HOH A 140 840 73 HOH HOH . C 3 HOH A 141 841 103 HOH HOH . C 3 HOH A 142 842 166 HOH HOH . C 3 HOH A 143 843 20 HOH HOH . C 3 HOH A 144 844 54 HOH HOH . C 3 HOH A 145 845 53 HOH HOH . C 3 HOH A 146 846 136 HOH HOH . C 3 HOH A 147 847 92 HOH HOH . C 3 HOH A 148 848 182 HOH HOH . C 3 HOH A 149 849 145 HOH HOH . C 3 HOH A 150 850 6 HOH HOH . C 3 HOH A 151 851 108 HOH HOH . C 3 HOH A 152 852 153 HOH HOH . C 3 HOH A 153 853 179 HOH HOH . C 3 HOH A 154 854 115 HOH HOH . C 3 HOH A 155 855 161 HOH HOH . C 3 HOH A 156 856 148 HOH HOH . C 3 HOH A 157 857 109 HOH HOH . C 3 HOH A 158 858 116 HOH HOH . C 3 HOH A 159 859 142 HOH HOH . C 3 HOH A 160 860 70 HOH HOH . C 3 HOH A 161 861 124 HOH HOH . C 3 HOH A 162 862 172 HOH HOH . C 3 HOH A 163 863 174 HOH HOH . C 3 HOH A 164 864 58 HOH HOH . C 3 HOH A 165 865 102 HOH HOH . C 3 HOH A 166 866 169 HOH HOH . C 3 HOH A 167 867 97 HOH HOH . C 3 HOH A 168 868 67 HOH HOH . C 3 HOH A 169 869 62 HOH HOH . C 3 HOH A 170 870 170 HOH HOH . C 3 HOH A 171 871 32 HOH HOH . C 3 HOH A 172 872 49 HOH HOH . C 3 HOH A 173 873 66 HOH HOH . C 3 HOH A 174 874 81 HOH HOH . C 3 HOH A 175 875 133 HOH HOH . C 3 HOH A 176 876 95 HOH HOH . C 3 HOH A 177 877 96 HOH HOH . C 3 HOH A 178 878 74 HOH HOH . C 3 HOH A 179 879 144 HOH HOH . C 3 HOH A 180 880 137 HOH HOH . C 3 HOH A 181 881 98 HOH HOH . C 3 HOH A 182 882 93 HOH HOH . C 3 HOH A 183 883 191 HOH HOH . C 3 HOH A 184 884 171 HOH HOH . C 3 HOH A 185 885 114 HOH HOH . C 3 HOH A 186 886 127 HOH HOH . C 3 HOH A 187 887 193 HOH HOH . C 3 HOH A 188 888 85 HOH HOH . C 3 HOH A 189 889 173 HOH HOH . C 3 HOH A 190 890 87 HOH HOH . C 3 HOH A 191 891 168 HOH HOH . C 3 HOH A 192 892 154 HOH HOH . C 3 HOH A 193 893 175 HOH HOH . C 3 HOH A 194 894 158 HOH HOH . C 3 HOH A 195 895 126 HOH HOH . C 3 HOH A 196 896 91 HOH HOH . C 3 HOH A 197 897 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6N8 . . . B 2 21.009 -8.227 -13.086 1 51.17 ? C1 6N8 601 A 1 HETATM 2 C C21 6N8 . . . B 2 15.79 -10.332 -8.923 1 52.12 ? C21 6N8 601 A 1 HETATM 3 C C2 6N8 . . . B 2 19.673 -7.851 -13.206 1 51.09 ? C2 6N8 601 A 1 HETATM 4 C C6 6N8 . . . B 2 21.325 -9.566 -12.837 1 51.25 ? C6 6N8 601 A 1 HETATM 5 C C20 6N8 . . . B 2 15.085 -10.368 -10.124 1 51.73 ? C20 6N8 601 A 1 HETATM 6 C C22 6N8 . . . B 2 17.165 -10.56 -8.942 1 52.27 ? C22 6N8 601 A 1 HETATM 7 C C3 6N8 . . . B 2 18.663 -8.805 -13.076 1 51.14 ? C3 6N8 601 A 1 HETATM 8 C C5 6N8 . . . B 2 20.315 -10.519 -12.69 1 51.11 ? C5 6N8 601 A 1 HETATM 9 C C19 6N8 . . . B 2 15.748 -10.631 -11.322 1 51.57 ? C19 6N8 601 A 1 HETATM 10 C C23 6N8 . . . B 2 17.822 -10.812 -10.15 1 51.9 ? C23 6N8 601 A 1 HETATM 11 C C4 6N8 . . . B 2 18.975 -10.144 -12.816 1 51.09 ? C4 6N8 601 A 1 HETATM 12 C C18 6N8 . . . B 2 17.128 -10.866 -11.356 1 51.47 ? C18 6N8 601 A 1 HETATM 13 C C11 6N8 . . . B 2 16.461 -11.36 -17.165 1 49.75 ? C11 6N8 601 A 1 HETATM 14 C C15 6N8 . . . B 2 14.25 -13.493 -19.251 1 47.71 ? C15 6N8 601 A 1 HETATM 15 C C16 6N8 . . . B 2 14.196 -12.131 -19.951 1 47.76 ? C16 6N8 601 A 1 HETATM 16 C C14 6N8 . . . B 2 15.265 -13.351 -18.132 1 47.91 ? C14 6N8 601 A 1 HETATM 17 C C17 6N8 . . . B 2 15.266 -11.271 -19.302 1 47.99 ? C17 6N8 601 A 1 HETATM 18 C C8 6N8 . . . B 2 16.988 -11.312 -13.843 1 50.8 ? C8 6N8 601 A 1 HETATM 19 C C9 6N8 . . . B 2 17.763 -11.671 -15.089 1 50.65 ? C9 6N8 601 A 1 HETATM 20 C C7 6N8 . . . B 2 17.892 -11.158 -12.625 1 51.13 ? C7 6N8 601 A 1 HETATM 21 N N13 6N8 . . . B 2 15.554 -11.924 -18.037 1 48.38 ? N13 6N8 601 A 1 HETATM 22 N N10 6N8 . . . B 2 16.859 -12.128 -16.106 1 50.42 ? N10 6N8 601 A 1 HETATM 23 O O12 6N8 . . . B 2 16.89 -10.229 -17.31 1 50.62 ? O12 6N8 601 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 23 #